Example usage for com.mongodb BasicDBObject get

Introduction

In this page you can find the example usage for com.mongodb BasicDBObject get.

Prototype

public Object get(final String key)

Source Link

Document

Gets a value from this object

Usage

From source file:eu.cassandra.sim.Simulation.java

License:Apache License

private String addEntity(Entity e, boolean jump) {
    BasicDBObject obj = e.toDBObject();
    if (!jump)//from w  w w .j a  v a2s. com
        DBConn.getConn(dbname).getCollection(e.getCollection()).insert(obj);
    ObjectId objId = (ObjectId) obj.get("_id");
    return objId.toString();
}

From source file:eu.eubrazilcc.lvl.storage.dao.LeishmaniaDAO.java

License:EUPL

private BasicDBObject parseFilter(final String parameter, final String expression, final BasicDBObject query)
        throws InvalidFilterParseException {
    BasicDBObject query2 = query;
    if (isNotBlank(parameter) && isNotBlank(expression)) {
        String field = null;/*from  ww  w  .j  ava  2s .  c  o m*/
        // keyword matching search
        if ("source".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "dataSource";
        } else if ("definition".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "definition";
        } else if ("accession".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "accession";
        } else if ("length".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "length";
        } else if ("gene".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "gene";
        } else if ("organism".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "organism";
        } else if ("country".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "countryFeature";
        } else if ("locale".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "locale";
        }
        if (isNotBlank(field)) {
            if ("accession".equalsIgnoreCase(parameter)) {
                // convert the expression to upper case and compare for exact matching
                query2 = (query2 != null ? query2 : new BasicDBObject()).append(field,
                        expression.toUpperCase());
            } else if ("locale".equalsIgnoreCase(parameter)) {
                // regular expression to match the language part of the locale
                final Pattern regex = compile("(" + expression.toLowerCase() + ")([_]{1}[A-Z]{2}){0,1}");
                query2 = (query2 != null ? query2 : new BasicDBObject()).append(field, regex);
            } else if ("length".equalsIgnoreCase(parameter)) {
                // comparison operator
                query2 = mongoNumeriComparison(field, expression);
            } else {
                // regular expression to match all entries that contains the keyword
                final Pattern regex = compile(".*" + expression + ".*", CASE_INSENSITIVE);
                query2 = (query2 != null ? query2 : new BasicDBObject()).append(field, regex);
            }
        } else {
            // full-text search
            if ("text".equalsIgnoreCase(parameter)) {
                field = "$text";
            }
            if (isNotBlank(field)) {
                if (query2 != null) {
                    final BasicDBObject textSearch = (BasicDBObject) query2.get("$text");
                    final BasicDBObject search = new BasicDBObject("$search",
                            textSearch != null ? textSearch.getString("$search") + " " + expression
                                    : expression);
                    query2 = query2.append("$text", search.append("$language", "english"));
                } else {
                    final BasicDBObject search = new BasicDBObject("$search", expression);
                    query2 = new BasicDBObject().append("$text", search.append("$language", "english"));
                }
            } else {
                throw new InvalidFilterParseException(parameter);
            }
        }
    }
    return query2;
}

From source file:eu.eubrazilcc.lvl.storage.dao.LeishmaniaDAO.java

License:EUPL

private Leishmania parseObject(final Object obj) {
    final BasicDBObject obj2 = (BasicDBObject) obj;
    return map((BasicDBObject) obj2.get("obj")).getLeishmania();
}

From source file:eu.eubrazilcc.lvl.storage.dao.LvlInstanceDAO.java

License:EUPL

private LvlInstance parseObject(final Object obj) {
    final BasicDBObject obj2 = (BasicDBObject) obj;
    return map((BasicDBObject) obj2.get("obj")).getLvlInstance();
}

From source file:eu.eubrazilcc.lvl.storage.dao.ReferenceDAO.java

License:EUPL

@SuppressWarnings("unused")
private Reference parseObject(final Object obj) {
    final BasicDBObject obj2 = (BasicDBObject) obj;
    return map((BasicDBObject) obj2.get("obj")).getReference();
}

From source file:eu.eubrazilcc.lvl.storage.dao.SandflyDAO.java

License:EUPL

private BasicDBObject parseFilter(final String parameter, final String expression, final BasicDBObject query)
        throws InvalidFilterParseException {
    BasicDBObject query2 = query;
    if (isNotBlank(parameter) && isNotBlank(expression)) {
        String field = null;/* www  .j a va2  s .  c o  m*/
        // keyword matching search
        if ("source".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "dataSource";
        } else if ("definition".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "definition";
        } else if ("accession".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "accession";
        } else if ("length".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "length";
        } else if ("gene".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "gene";
        } else if ("organism".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "organism";
        } else if ("country".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "countryFeature";
        } else if ("locale".equalsIgnoreCase(parameter)) {
            field = DB_PREFIX + "locale";
        }
        if (isNotBlank(field)) {
            if ("accession".equalsIgnoreCase(parameter)) {
                // convert the expression to upper case and compare for exact matching
                query2 = (query2 != null ? query2 : new BasicDBObject()).append(field,
                        expression.toUpperCase()); // TODO
            } else if ("locale".equalsIgnoreCase(parameter)) {
                // regular expression to match the language part of the locale
                final Pattern regex = compile("(" + expression.toLowerCase() + ")([_]{1}[A-Z]{2}){0,1}");
                query2 = (query2 != null ? query2 : new BasicDBObject()).append(field, regex); // TODO
            } else if ("length".equalsIgnoreCase(parameter)) {
                // comparison operator
                query2 = mongoNumeriComparison(field, expression); // TODO
            } else {
                // regular expression to match all entries that contains the keyword
                final Pattern regex = compile(".*" + expression + ".*", CASE_INSENSITIVE);
                query2 = (query2 != null ? query2 : new BasicDBObject()).append(field, regex); // TODO
            }
        } else {
            // full-text search
            if ("text".equalsIgnoreCase(parameter)) {
                field = "$text";
            }
            if (isNotBlank(field)) {
                if (query2 != null) {
                    final BasicDBObject textSearch = (BasicDBObject) query2.get("$text");
                    final BasicDBObject search = new BasicDBObject("$search",
                            textSearch != null ? textSearch.getString("$search") + " " + expression
                                    : expression);
                    query2 = query2.append("$text", search.append("$language", "english"));
                } else {
                    final BasicDBObject search = new BasicDBObject("$search", expression);
                    query2 = new BasicDBObject().append("$text", search.append("$language", "english"));
                }
            } else {
                throw new InvalidFilterParseException(parameter);
            }
        }
    }
    return query2;
}

From source file:eu.eubrazilcc.lvl.storage.dao.SandflyDAO.java

License:EUPL

private Sandfly parseObject(final Object obj) {
    final BasicDBObject obj2 = (BasicDBObject) obj;
    return map((BasicDBObject) obj2.get("obj")).getSandfly();
}

From source file:eu.eubrazilcc.lvl.storage.dao.SavedSearchDAO.java

License:EUPL

@SuppressWarnings("unused")
private SavedSearch parseObject(final Object obj) {
    final BasicDBObject obj2 = (BasicDBObject) obj;
    return map((BasicDBObject) obj2.get("obj")).getSavedSearch();
}

From source file:eu.eubrazilcc.lvl.storage.dao.WorkflowRunDAO.java

License:EUPL

@SuppressWarnings("unused")
private WorkflowRun parseObject(final Object obj) {
    final BasicDBObject obj2 = (BasicDBObject) obj;
    return map((BasicDBObject) obj2.get("obj")).getWorkflowRun();
}

From source file:eu.eubrazilcc.lvl.storage.mongodb.MongoDBConnector.java

License:EUPL

/**
 * Updates a object previously stored in a collection.
 * @param obj - value used to update the object
 * @param query - statement that is used to find the object in the collection
 * @param collection - collection where the object is searched
 *//*from  ww w. j  a v  a  2s . co  m*/
public void update(final DBObject obj, final DBObject query, final String collection) {
    checkArgument(obj != null, "Uninitialized object");
    checkArgument(isNotBlank(collection), "Uninitialized or invalid collection");
    final DB db = client().getDB(CONFIG_MANAGER.getDbName());
    final DBCollection dbcol = db.getCollection(collection);
    final BasicDBObject current = (BasicDBObject) dbcol.findOne(query);
    checkState(current != null, "Object not found");
    dbcol.save(BasicDBObjectBuilder.start(obj.toMap()).append("_id", current.get("_id")).get());
}