Example usage for org.dom4j Element attribute

List of usage examples for org.dom4j Element attribute

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Introduction

In this page you can find the example usage for org.dom4j Element attribute.

Prototype

Attribute attribute(QName qName);

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Usage

From source file:com.founder.fix.fixflow.core.impl.util.XmlUtil.java

License:Apache License

public static String getElementAttributeValue(Element element, String value) {
    if (element != null)
        return getAttributeValue(element.attribute(value));
    else/* w w  w. j a v a 2  s . c  o m*/
        return "";
}

From source file:com.github.autoprimer3.AutoPrimer3Config.java

License:Open Source License

public LinkedHashSet<String> readTableFile(Document dasXml) throws DocumentException {
    LinkedHashSet<String> tables = new LinkedHashSet<>();
    Element root = dasXml.getRootElement();
    Element gff = root.element("GFF");
    Element segment = gff.element("SEGMENT");
    for (Iterator i = segment.elementIterator("TYPE"); i.hasNext();) {
        Element type = (Element) i.next();
        Attribute id = type.attribute("id");
        tables.add(id.getValue());//w w  w . ja v  a2  s.c o  m
    }
    return tables;
}

From source file:com.github.autoprimer3.AutoPrimer3Config.java

License:Open Source License

public LinkedHashSet<String> readTableFile(Document dasXml, String category) throws DocumentException {
    LinkedHashSet<String> tables = new LinkedHashSet<>();
    Element root = dasXml.getRootElement();
    Element gff = root.element("GFF");
    Element segment = gff.element("SEGMENT");
    for (Iterator i = segment.elementIterator("TYPE"); i.hasNext();) {
        Element type = (Element) i.next();
        Attribute id = type.attribute("id");
        Attribute cat = type.attribute("category");
        if (cat.getValue().equals(category)) {
            tables.add(id.getValue());/*  w w  w. ja v  a2  s  .  c o  m*/
        }
    }
    return tables;
}

From source file:com.github.autoprimer3.GetUcscBuildsAndTables.java

License:Open Source License

public void readDasGenomeXmlDocument() {
    if (dasGenomeXml == null) {
        return;/*w w w  .  j  a v a  2s.c o  m*/
    }
    Element root = dasGenomeXml.getRootElement();
    for (Iterator i = root.elementIterator("DSN"); i.hasNext();) {
        Element dsn = (Element) i.next();
        Element source = dsn.element("SOURCE");
        Attribute build = source.attribute("id");
        Element mapmaster = dsn.element("MAPMASTER");
        Element desc = dsn.element("DESCRIPTION");
        buildToMapMaster.put(build.getValue(), mapmaster.getText());
        buildToDescription.put(build.getValue(), desc.getText());
    }
}

From source file:com.github.autoprimer3.SequenceFromDasUcsc.java

License:Open Source License

SequenceFromDasUcsc() {//get build names and DAS urls
    try {//from   w w w.  j a va  2  s.  c  o m
        SAXReader reader = new SAXReader();
        URL url = new URL("http://genome.ucsc.edu/cgi-bin/das/dsn");//usa    
        //URL url = new URL("http://genome-euro.ucsc.edu/cgi-bin/das/dsn");    
        Document dasXml;
        dasXml = reader.read(url);
        Element root = dasXml.getRootElement();
        for (Iterator i = root.elementIterator("DSN"); i.hasNext();) {
            Element dsn = (Element) i.next();
            Element source = dsn.element("SOURCE");
            Attribute build = source.attribute("id");
            Element mapmaster = dsn.element("MAPMASTER");
            buildToMapMaster.put(build.getValue(), mapmaster.getText());
        }
    } catch (DocumentException | MalformedURLException ex) {
        //TO DO - handle (throw) this error properly
        ex.printStackTrace();
    }
}

From source file:com.glaf.activiti.extension.xml.ExtensionReader.java

License:Apache License

public List<ExtensionEntity> readTasks(java.io.InputStream inputStream) {
    List<ExtensionEntity> extensions = new java.util.ArrayList<ExtensionEntity>();
    SAXReader xmlReader = new SAXReader();
    try {//from  w w  w  . j a  v  a 2s  .  c  o  m
        Document doc = xmlReader.read(inputStream);
        Element root = doc.getRootElement();
        String x_type = root.attributeValue("type");
        List<?> rows = root.elements("taskmgr");
        Iterator<?> iterator = rows.iterator();
        while (iterator.hasNext()) {
            Element element = (Element) iterator.next();
            ExtensionEntity extension = new ExtensionEntity();
            extension.setProcessName(element.attributeValue("processName"));
            extension.setTaskName(element.attributeValue("taskName"));
            extension.setType(x_type);
            if (element.elementTextTrim("taskMgmtType") != null) {
                ExtensionFieldEntity extensionField = new ExtensionFieldEntity();
                extensionField.setName("taskMgmtType");
                extensionField.setValue(element.elementTextTrim("taskMgmtType"));
                extension.addField(extensionField);
            }
            Element propertiesE = element.element("properties");
            if (propertiesE != null) {
                List<?> properties = propertiesE.elements("property");
                Iterator<?> iter = properties.iterator();
                while (iter.hasNext()) {
                    Element elem = (Element) iter.next();
                    String propertyName = elem.attributeValue("key");
                    String propertyValue = null;
                    if (elem.attribute("value") != null) {
                        propertyValue = elem.attributeValue("value");
                    } else {
                        propertyValue = elem.getTextTrim();
                    }
                    if (StringUtils.isNotEmpty(propertyName) && StringUtils.isNotEmpty(propertyValue)) {
                        ExtensionFieldEntity extensionField = new ExtensionFieldEntity();
                        extensionField.setName(propertyName.trim());
                        extensionField.setValue(propertyValue.trim());
                        extension.addField(extensionField);
                    }
                }
            }
            if (element.elementText("handlers") != null) {
                ExtensionFieldEntity extensionField = new ExtensionFieldEntity();
                extensionField.setName("handlers");
                extensionField.setValue(element.elementTextTrim("handlers"));
                extension.addField(extensionField);
            }
            extensions.add(extension);
        }

    } catch (Exception ex) {
        throw new RuntimeException(ex);
    }
    return extensions;
}

From source file:com.glaf.activiti.extension.xml.ExtensionReader.java

License:Apache License

public List<ExtensionEntity> readActions(java.io.InputStream inputStream) {
    List<ExtensionEntity> extensions = new java.util.ArrayList<ExtensionEntity>();
    SAXReader xmlReader = new SAXReader();
    try {//from  www. ja v a2  s.  c  o m
        Document doc = xmlReader.read(inputStream);
        Element root = doc.getRootElement();
        String x_type = root.attributeValue("type");
        List<?> actions = root.elements("action");
        Iterator<?> iter = actions.iterator();
        while (iter.hasNext()) {
            Element element = (Element) iter.next();
            ExtensionEntity extension = new ExtensionEntity();
            extension.setProcessName(element.attributeValue("processName"));
            extension.setTaskName(element.attributeValue("taskName"));
            extension.setName(element.attributeValue("name"));
            extension.setType(x_type);
            extension.setDescription(element.elementTextTrim("description"));
            Iterator<?> it99 = element.elementIterator();
            while (it99.hasNext()) {
                Element elem = (Element) it99.next();
                String propertyName = elem.getName();
                String propertyValue = elem.getTextTrim();
                if (StringUtils.isNotEmpty(propertyValue)) {
                    ExtensionFieldEntity extensionField = new ExtensionFieldEntity();
                    extensionField.setName(propertyName.trim());
                    extensionField.setValue(propertyValue.trim());
                    extension.addField(extensionField);
                }
            }
            if (element.elementText("sql") != null) {
                ExtensionFieldEntity extensionField = new ExtensionFieldEntity();
                extensionField.setName("sql");
                extensionField.setValue(element.elementTextTrim("sql"));
                extension.addField(extensionField);

            }
            if (element.elementText("handlers") != null) {
                ExtensionFieldEntity extensionField = new ExtensionFieldEntity();
                extensionField.setName("handlers");
                extensionField.setValue(element.elementTextTrim("handlers"));
                extension.addField(extensionField);
            }

            Element parametersE = element.element("parameters");
            if (parametersE != null) {
                List<?> parameters = parametersE.elements("parameter");
                Iterator<?> it = parameters.iterator();
                while (it.hasNext()) {
                    Element elem = (Element) it.next();
                    String propertyName = elem.attributeValue("name");
                    String type = elem.attributeValue("type");
                    String propertyValue = null;
                    if (elem.attribute("value") != null) {
                        propertyValue = elem.attributeValue("value");
                    } else {
                        propertyValue = elem.getTextTrim();
                    }
                    if (StringUtils.isNotEmpty(propertyName) && StringUtils.isNotEmpty(propertyValue)) {
                        ExtensionParamEntity extensionParam = new ExtensionParamEntity();
                        extensionParam.setName(propertyName.trim());
                        extensionParam.setValue(propertyValue.trim());
                        extensionParam.setType(type);
                        extension.addParam(extensionParam);
                    }
                }
            }

            extensions.add(extension);
        }
    } catch (Exception ex) {
        throw new RuntimeException(ex);
    }
    return extensions;
}

From source file:com.glaf.activiti.extension.xml.ExtensionWriter.java

License:Apache License

public Document write(List<ExtensionEntity> extensions) {
    Document doc = DocumentHelper.createDocument();
    if (extensions != null && extensions.size() > 0) {
        Element root = doc.addElement("bpm-cfg");
        Iterator<ExtensionEntity> iterator = extensions.iterator();
        while (iterator.hasNext()) {
            ExtensionEntity extension = iterator.next();
            if (root.attribute("type") == null && extension.getType() != null) {
                root.addAttribute("type", extension.getType());
            }//from  w w w .  j  a  v a 2 s.  c  o  m
            if (StringUtils.isNotEmpty(extension.getTaskName())) {
                Element element = root.addElement("taskmgr");
                element.addAttribute("processName", extension.getProcessName());
                element.addAttribute("taskName", extension.getTaskName());
                if (extension.getFieldValue("taskMgmtType") != null) {
                    Element elem = element.addElement("taskMgmtType");
                    elem.setText(extension.getFieldValue("taskMgmtType"));
                }
                if (extension.getFieldValue("handlers") != null) {
                    Element elem = element.addElement("handlers");
                    elem.setText(extension.getFieldValue("handlers"));
                }
                if (extension.getFields() != null && extension.getFields().size() > 0) {
                    Element elem = element.addElement("properties");
                    Iterator<ExtensionFieldEntity> iter = extension.getFields().values().iterator();
                    while (iter.hasNext()) {
                        ExtensionFieldEntity field = iter.next();
                        Element e = elem.addElement("property");
                        e.addAttribute("key", field.getName());
                        e.addCDATA(field.getValue());
                    }
                }
            } else if (StringUtils.isNotEmpty(extension.getName())) {
                Element element = root.addElement("action");
                element.addAttribute("processName", extension.getProcessName());
                element.addAttribute("name", extension.getName());
                if (extension.getFieldValue("sql") != null) {
                    Element elem = element.addElement("sql");
                    elem.addCDATA(extension.getFieldValue("sql"));
                }
                if (extension.getFieldValue("handlers") != null) {
                    Element elem = element.addElement("handlers");
                    elem.setText(extension.getFieldValue("handlers"));
                }
                if (extension.getParams() != null && extension.getParams().size() > 0) {
                    Element em = element.addElement("parameters");
                    Iterator<ExtensionParamEntity> iter = extension.getParams().iterator();
                    while (iter.hasNext()) {
                        ExtensionParamEntity param = iter.next();
                        Element e = em.addElement("parameter");
                        e.addAttribute("name", param.getName());
                        e.addAttribute("type", param.getType());
                        e.addCDATA(param.getValue());
                    }
                }
            }
        }
    }
    return doc;
}

From source file:com.glaf.core.todo.util.TodoXmlReader.java

License:Apache License

public List<Todo> read(java.io.InputStream inputStream) {
    List<Todo> todos = new java.util.ArrayList<Todo>();
    SAXReader xmlReader = new SAXReader();
    int sortNo = 1;
    try {/*w ww  .ja v  a 2  s.c  o m*/
        Document doc = xmlReader.read(inputStream);
        Element root = doc.getRootElement();
        List<?> rows = root.elements();
        Iterator<?> iterator = rows.iterator();
        while (iterator.hasNext()) {
            Element element = (Element) iterator.next();
            String id = element.attributeValue("id");
            Map<String, Object> rowMap = new java.util.HashMap<String, Object>();
            rowMap.put("id", id);
            List<?> properties = element.elements("property");
            Iterator<?> iter = properties.iterator();
            while (iter.hasNext()) {
                Element elem = (Element) iter.next();
                String propertyName = elem.attributeValue("name");
                String propertyValue = null;
                if (elem.attribute("value") != null) {
                    propertyValue = elem.attributeValue("value");
                } else {
                    propertyValue = elem.getTextTrim();
                }
                if (StringUtils.isNotEmpty(propertyName) && StringUtils.isNotEmpty(propertyValue)) {
                    rowMap.put(propertyName, propertyValue);
                }
            }

            Todo model = new Todo();
            model.setSortNo(sortNo++);
            Tools.populate(model, rowMap);

            todos.add(model);
        }
    } catch (Exception ex) {
        ex.printStackTrace();
        throw new RuntimeException(ex.getMessage());
    }
    return todos;
}

From source file:com.glaf.core.xml.XmlBuilder.java

License:Apache License

@SuppressWarnings({ "rawtypes", "unchecked" })
protected void processNode(Element element, Map<String, DatasetModel> dataSetMap, String systemName,
        Map<String, Object> params) {
    //LOG.debug("---------------------processNode-----------------------");
    String dsId = element.attributeValue("DataSetId");

    if (StringUtils.isNotEmpty(dsId) && dataSetMap.get(dsId) != null) {
        //LOG.debug(element.getName() + " ds->" + dsId);
        element.remove(element.attribute("DataSetId"));
        Element parent = element.getParent();
        DatasetModel dsm = dataSetMap.get(dsId);
        String sql = dsm.getSql();
        String queryId = dsm.getQueryId();
        boolean single = dsm.isSingle();
        boolean foreachPerRow = dsm.isForeachPerRow();
        List<Map<String, Object>> rows = null;
        List<String> splits = dsm.getSplitList();
        if (foreachPerRow) {
            LOG.debug("sql:" + sql);
            LOG.debug("params:" + params);
            rows = queryHelper.getResultList(systemName, sql, params);
            // ITablePageService tablePageService =
            // ContextFactory.getBean("tablePageService");
            // rows = queryHelper.getResultList(systemName, sql, params);
            // Environment.setCurrentSystemName(systemName);
            // rows = tablePageService.getListData(sql, params);
            LOG.debug("#2 rows:" + rows.size());
        } else {//w ww  .  j ava  2  s. c  o m
            rows = ResultThreadLocal.getResultList(dsId);
            if (rows == null) {
                if (StringUtils.isNotEmpty(queryId)) {
                    Environment.setCurrentSystemName(systemName);
                    List<Object> list = entityService.getList(queryId, params);
                    if (list != null && !list.isEmpty()) {
                        rows = new ArrayList<Map<String, Object>>();
                        for (Object object : list) {
                            if (object instanceof Map) {
                                Map dataMap = (Map) object;
                                rows.add(dataMap);
                            } else {
                                try {
                                    Map dataMap = BeanUtils.describe(object);
                                    rows.add(dataMap);
                                } catch (Exception e) {
                                }
                            }
                        }
                    }
                } else if (StringUtils.isNotEmpty(sql)) {
                    LOG.debug("sql:" + sql);
                    LOG.debug("params:" + params);
                    rows = queryHelper.getResultList(systemName, sql, params);
                    // ITablePageService tablePageService =
                    // ContextFactory.getBean("tablePageService");
                    // rows = queryHelper.getResultList(systemName, sql,
                    // params);
                    // Environment.setCurrentSystemName(systemName);
                    // rows = tablePageService.getListData(sql, params);
                    LOG.debug("#3 rows:" + rows.size());
                }
                ResultThreadLocal.setResultList(dsId, rows);
            }
        }
        if (rows != null && !rows.isEmpty()) {
            if (single) {
                Map<String, Object> dataMap = rows.get(0);
                if (dsm.getControllers() != null && !dsm.getControllers().isEmpty()) {
                    List<FieldController> controllers = dsm.getControllers();
                    for (FieldController c : controllers) {
                        Class<?> x = ClassUtils.classForName(c.getProvider());
                        FieldConverter fp = (FieldConverter) ReflectUtils.newInstance(x);
                        fp.convert(c.getFromName(), c.getToName(), dataMap);
                    }
                }
                this.processTextNode(element, dataSetMap, dataMap, systemName, params);
            } else {
                int sortNo = 0;
                for (Map<String, Object> dataMap : rows) {
                    if (splits != null && !splits.isEmpty()) {
                        int splitCnt = 0;
                        Iterator<String> it = splits.iterator();
                        while (it.hasNext()) {
                            String str = it.next();
                            if (str != null && ObjectUtils.equals(dataMap.get(str), params.get(str))) {
                                splitCnt = splitCnt + 1;
                            } else if (str != null && ObjectUtils.equals(dataMap.get(str.toLowerCase()),
                                    params.get(str.toLowerCase()))) {
                                splitCnt = splitCnt + 1;
                            }
                        }
                        /**
                         * ???
                         */
                        if (splitCnt != splits.size()) {
                            // LOG.debug("dsId="+dsId);
                            // LOG.debug("params:"+params );
                            // LOG.debug(dataMap + " ???");
                            continue;
                        }
                    }
                    sortNo = sortNo + 1;
                    dataMap.put("sortNo", sortNo);
                    if (dsm.getControllers() != null && !dsm.getControllers().isEmpty()) {
                        List<FieldController> controllers = dsm.getControllers();
                        for (FieldController c : controllers) {
                            Class<?> x = ClassUtils.classForName(c.getProvider());
                            FieldConverter fp = (FieldConverter) ReflectUtils.newInstance(x);
                            fp.convert(c.getFromName(), c.getToName(), dataMap);
                        }
                    }

                    Element e = element.createCopy();
                    this.processTextNode(e, dataSetMap, dataMap, systemName, params);
                    parent.add(e);

                }
                parent.remove(element);
            }
        } else {
            parent.remove(element);
        }
    } else {
        this.processTextNode(element, dataSetMap, null, systemName, params);
    }
}