List of usage examples for org.joda.time DateTime getMinuteOfHour
public int getMinuteOfHour()
From source file:org.iexhub.connectors.PIXManager.java
License:Apache License
/** * @param fhirPatientResource//from w w w . jav a 2 s . c o m * @return * @throws IOException */ public MCCIIN000002UV01 registerPatient(Patient fhirPatientResource) throws IOException { String dateOfBirth = (fhirPatientResource.getBirthDate() != null) ? fhirPatientResource.getBirthDateElement().getValueAsString() : null; String gender = (fhirPatientResource.getGender() == null) ? "" : (fhirPatientResource.getGender() .compareToIgnoreCase(AdministrativeGenderEnum.MALE.getCode()) == 0) ? "M" : ((fhirPatientResource.getGender() .compareToIgnoreCase(AdministrativeGenderEnum.FEMALE.getCode()) == 0) ? "F" : ((fhirPatientResource.getGender().compareToIgnoreCase( AdministrativeGenderEnum.OTHER.getCode()) == 0) ? "UN" : "")); if ((fhirPatientResource.getName().get(0).getFamilyAsSingleString() == null) || (fhirPatientResource.getName().get(0).getFamilyAsSingleString().length() == 0)) { throw new FamilyNameParamMissingException("FamilyName parameter is required"); } PRPAIN201301UV02 pRPA_IN201301UV02 = new PRPAIN201301UV02(); // ITS version... pRPA_IN201301UV02.setITSVersion("XML_1.0"); // ID... II messageId = new II(); messageId.setRoot(iExHubDomainOid); messageId.setExtension(UUID.randomUUID().toString()); pRPA_IN201301UV02.setId(messageId); // Creation time... DateTime dt = new DateTime(DateTimeZone.UTC); TS creationTime = new TS(); StringBuilder creationTimeBuilder = new StringBuilder(); creationTimeBuilder.append(dt.getYear()); creationTimeBuilder.append((dt.getMonthOfYear() < 10) ? ("0" + dt.getMonthOfYear()) : dt.getMonthOfYear()); creationTimeBuilder.append((dt.getDayOfMonth() < 10) ? ("0" + dt.getDayOfMonth()) : dt.getDayOfMonth()); creationTimeBuilder.append((dt.getHourOfDay() < 10) ? ("0" + dt.getHourOfDay()) : dt.getHourOfDay()); creationTimeBuilder .append((dt.getMinuteOfHour() < 10) ? ("0" + dt.getMinuteOfHour()) : dt.getMinuteOfHour()); creationTimeBuilder .append((dt.getSecondOfMinute() < 10) ? ("0" + dt.getSecondOfMinute()) : dt.getSecondOfMinute()); creationTime.setValue(creationTimeBuilder.toString()); pRPA_IN201301UV02.setCreationTime(creationTime); // Interaction ID... II interactionId = new II(); interactionId.setRoot("2.16.840.1.113883.1.6"); interactionId.setExtension("PRPA_IN201301UV02"); pRPA_IN201301UV02.setInteractionId(interactionId); // Processing code... CS processingCode = new CS(); processingCode.setCode("P"); pRPA_IN201301UV02.setProcessingCode(processingCode); // Processing mode code... CS processingModeCode = new CS(); processingModeCode.setCode("T"); pRPA_IN201301UV02.setProcessingModeCode(processingModeCode); // Accept ack code... CS acceptAckCode = new CS(); acceptAckCode.setCode("AL"); pRPA_IN201301UV02.setAcceptAckCode(acceptAckCode); // Create receiver... MCCIMT000100UV01Receiver receiver = new MCCIMT000100UV01Receiver(); receiver.setTypeCode(CommunicationFunctionType.RCV); MCCIMT000100UV01Device receiverDevice = new MCCIMT000100UV01Device(); receiverDevice.setClassCode(EntityClassDevice.DEV); receiverDevice.setDeterminerCode("INSTANCE"); II receiverDeviceId = new II(); receiverDeviceId.setRoot(receiverApplicationName); receiverDevice.getId().add(receiverDeviceId); MCCIMT000100UV01Agent asAgent = new MCCIMT000100UV01Agent(); asAgent.getClassCode().add("AGNT"); MCCIMT000100UV01Organization representedOrganization = new MCCIMT000100UV01Organization(); representedOrganization.setDeterminerCode("INSTANCE"); representedOrganization.setClassCode("ORG"); II representedOrganizationId = new II(); representedOrganizationId.setRoot(PIXManager.receiverApplicationRepresentedOrganization); representedOrganization.getId().add(representedOrganizationId); asAgent.setRepresentedOrganization( objectFactory.createMCCIMT000100UV01AgentRepresentedOrganization(representedOrganization)); receiverDevice.setAsAgent(objectFactory.createMCCIMT000100UV01DeviceAsAgent(asAgent)); receiver.setDevice(receiverDevice); pRPA_IN201301UV02.getReceiver().add(receiver); // Create sender... MCCIMT000100UV01Sender sender = new MCCIMT000100UV01Sender(); sender.setTypeCode(CommunicationFunctionType.SND); MCCIMT000100UV01Device senderDevice = new MCCIMT000100UV01Device(); senderDevice.setClassCode(EntityClassDevice.DEV); senderDevice.setDeterminerCode("INSTANCE"); II senderDeviceId = new II(); senderDeviceId.setRoot(PIXManager.iExHubSenderDeviceId); senderDevice.getId().add(senderDeviceId); MCCIMT000100UV01Agent senderAsAgent = new MCCIMT000100UV01Agent(); senderAsAgent.getClassCode().add("AGNT"); MCCIMT000100UV01Organization senderRepresentedOrganization = new MCCIMT000100UV01Organization(); senderRepresentedOrganization.setDeterminerCode("INSTANCE"); senderRepresentedOrganization.setClassCode("ORG"); II senderRepresentedOrganizationId = new II(); senderRepresentedOrganizationId.setRoot(PIXManager.iExHubDomainOid); senderRepresentedOrganization.getId().add(senderRepresentedOrganizationId); senderAsAgent.setRepresentedOrganization( objectFactory.createMCCIMT000100UV01AgentRepresentedOrganization(senderRepresentedOrganization)); senderDevice.setAsAgent(objectFactory.createMCCIMT000100UV01DeviceAsAgent(senderAsAgent)); sender.setDevice(senderDevice); pRPA_IN201301UV02.setSender(sender); PRPAIN201301UV02MFMIMT700701UV01Subject1 subject = new PRPAIN201301UV02MFMIMT700701UV01Subject1(); // Create Registration Event... PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent registrationEvent = new PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent(); registrationEvent.getClassCode().add("REG"); registrationEvent.getMoodCode().add("EVN"); registrationEvent.getNullFlavor().add("NA"); CS statusCode = new CS(); statusCode.setCode("active"); registrationEvent.setStatusCode(statusCode); PRPAIN201301UV02MFMIMT700701UV01Subject2 subject1 = new PRPAIN201301UV02MFMIMT700701UV01Subject2(); subject1.setTypeCode(ParticipationTargetSubject.SBJ); // Create Patient... PRPAMT201301UV02Patient patient = new PRPAMT201301UV02Patient(); patient.getClassCode().add("PAT"); CS patientStatusCode = new CS(); patientStatusCode.setCode("active"); patient.setStatusCode(patientStatusCode); // Create PatientPerson... PRPAMT201301UV02Person patientPerson = new PRPAMT201301UV02Person(); // Other ID's specified... II constructedPatientId = null; if (fhirPatientResource.getIdentifier() != null) { for (IdentifierDt fhirId : fhirPatientResource.getIdentifier()) { if ((fhirId.getUse() != null) && (fhirId.getUse().equals(IdentifierUseEnum.OFFICIAL.getCode()))) { // This is the official identifier constructedPatientId = new II(); if ((fhirId.getSystem() == null) || (fhirId.getSystem().length() == 0)) { throw new PatientIdParamMissingException("Patient ID system missing"); } constructedPatientId.setRoot((fhirId.getSystem().toLowerCase().startsWith(uriPrefix)) ? fhirId.getSystem().replace(uriPrefix, "") : fhirId.getSystem()); constructedPatientId.setExtension(fhirId.getValue()); constructedPatientId.setAssigningAuthorityName(PIXManager.iExHubAssigningAuthority); patient.getId().add(constructedPatientId); } else { PRPAMT201301UV02OtherIDs asOtherId = new PRPAMT201301UV02OtherIDs(); asOtherId.getClassCode().add("SD"); II otherId = new II(); otherId.setRoot(fhirId.getSystemElement().getValueAsString()); otherId.setExtension(fhirId.getValue()); asOtherId.getId().add(otherId); COCTMT150002UV01Organization scopingOrg = new COCTMT150002UV01Organization(); scopingOrg.setClassCode("ORG"); scopingOrg.setDeterminerCode("INSTANCE"); II scopingOrgId = new II(); scopingOrgId.setRoot(fhirId.getSystemElement().getValueAsString()); scopingOrg.getId().add(scopingOrgId); asOtherId.setScopingOrganization(scopingOrg); patientPerson.getAsOtherIDs().add(asOtherId); } } } patientPerson.getName().add(populatePersonName(fhirPatientResource.getName().get(0))); if ((gender != null) && (gender.length() > 0)) { CE adminGenderCode = new CE(); adminGenderCode.setCode(gender); adminGenderCode.setCodeSystem("2.16.840.1.113883.5.1"); patientPerson.setAdministrativeGenderCode(adminGenderCode); } else { CE adminGenderCode = new CE(); adminGenderCode.getNullFlavor().add("UNK"); adminGenderCode.setCodeSystem("2.16.840.1.113883.5.1"); patientPerson.setAdministrativeGenderCode(adminGenderCode); } patientPerson.getClassCode().add("PSN"); patientPerson.setDeterminerCode("INSTANCE"); if ((fhirPatientResource.getTelecom() != null) && (!fhirPatientResource.getTelecom().isEmpty())) { for (ContactPointDt contactPoint : fhirPatientResource.getTelecom()) { // Add if telecom value is present only if (contactPoint.getValue() != null && !contactPoint.getValue().isEmpty()) { TEL contactPartyTelecom = new TEL(); contactPartyTelecom.setValue(contactPoint.getValue()); patientPerson.getTelecom().add(contactPartyTelecom); } } } if (dateOfBirth != null) { // Try several formats for date parsing... DateTimeFormatter formatter = null; DateTime birthDateTime = null; try { formatter = DateTimeFormat.forPattern("MM/dd/yyyy"); birthDateTime = formatter.parseDateTime(dateOfBirth); } catch (Exception e) { try { formatter = DateTimeFormat.forPattern("yyyy-MM-dd"); birthDateTime = formatter.parseDateTime(dateOfBirth); } catch (Exception e2) { throw e2; } } StringBuilder birthDateBuilder = new StringBuilder(); birthDateBuilder.append(birthDateTime.getYear()); birthDateBuilder.append((birthDateTime.getMonthOfYear() < 10) ? ("0" + birthDateTime.getMonthOfYear()) : birthDateTime.getMonthOfYear()); birthDateBuilder.append((birthDateTime.getDayOfMonth() < 10) ? ("0" + birthDateTime.getDayOfMonth()) : birthDateTime.getDayOfMonth()); TS birthTime = new TS(); birthTime.setValue(birthDateBuilder.toString()); patientPerson.setBirthTime(birthTime); } JAXBElement<PRPAMT201301UV02Person> patientPersonElement = objectFactory .createPRPAMT201301UV02PatientPatientPerson(patientPerson); patient.setPatientPerson(patientPersonElement); // Create ProviderOrganization - set IExHub as provider if no careProvider specified in FHIR patient resource parameter... COCTMT150003UV03Organization providerOrganization = new COCTMT150003UV03Organization(); providerOrganization.setDeterminerCode("INSTANCE"); providerOrganization.setClassCode("ORG"); if ((fhirPatientResource.getCareProvider() != null) && (!fhirPatientResource.getCareProvider().isEmpty())) { for (ResourceReferenceDt resourceRef : fhirPatientResource.getCareProvider()) { if (resourceRef.getResource().getClass() == Organization.class) { Organization careProvider = (Organization) resourceRef.getResource(); // Provider ID II providerId = new II(); providerId.setRoot((careProvider.getId().getValueAsString().startsWith("#")) ? careProvider.getId().getValueAsString().substring(1) : careProvider.getId().getValueAsString()); providerOrganization.getId().add(providerId); // Provider name if ((careProvider.getName() != null) && (careProvider.getName().length() > 0)) { ON providerName = new ON(); providerName.getContent().add(careProvider.getName()); providerOrganization.getName().add(providerName); } // Create Contact Party if FHIR organization contacts are present... for (Contact fhirOrganizationContact : careProvider.getContact()) { COCTMT150003UV03ContactParty contactParty = new COCTMT150003UV03ContactParty(); contactParty.setClassCode(RoleClassContact.CON); // Contact telecom(s) if ((fhirOrganizationContact.getTelecom() != null) && (!fhirOrganizationContact.getTelecom().isEmpty())) { for (ContactPointDt contactPoint : fhirOrganizationContact.getTelecom()) { TEL contactPartyTelecom = new TEL(); contactPartyTelecom.setValue(contactPoint.getValue()); contactParty.getTelecom().add(contactPartyTelecom); } } // Contact name if ((fhirOrganizationContact.getName() != null) && (!fhirOrganizationContact.getName().isEmpty())) { COCTMT150003UV03Person contactPerson = new COCTMT150003UV03Person(); contactPerson.getName().add(populatePersonName(fhirOrganizationContact.getName())); contactParty.setContactPerson( objectFactory.createCOCTMT150003UV03ContactPartyContactPerson(contactPerson)); } // Contact address(es) if ((careProvider.getAddress() != null) && (!careProvider.getAddress().isEmpty())) { for (AddressDt fhirAddr : careProvider.getAddress()) { contactParty.getAddr().add(populatePatientAddress(fhirAddr)); } } providerOrganization.getContactParty().add(contactParty); } } } } else { II providerId = new II(); providerId.setRoot(providerOrganizationOid); providerOrganization.getId().add(providerId); ON providerName = new ON(); providerName.getContent().add(providerOrganizationName); providerOrganization.getName().add(providerName); COCTMT150003UV03ContactParty contactParty = new COCTMT150003UV03ContactParty(); contactParty.setClassCode(RoleClassContact.CON); TEL contactPartyTelecom = new TEL(); contactPartyTelecom.setValue(providerOrganizationContactTelecom); contactParty.getTelecom().add(contactPartyTelecom); providerOrganization.getContactParty().add(contactParty); } patient.setProviderOrganization(providerOrganization); subject1.setPatient(patient); registrationEvent.setSubject1(subject1); // Create Custodian info... MFMIMT700701UV01Custodian custodian = new MFMIMT700701UV01Custodian(); custodian.getTypeCode().add("CST"); COCTMT090003UV01AssignedEntity assignedEntity = new COCTMT090003UV01AssignedEntity(); assignedEntity.setClassCode("ASSIGNED"); II assignedEntityId = new II(); assignedEntityId.setRoot(iExHubDomainOid); assignedEntity.getId().add(assignedEntityId); COCTMT090003UV01Organization assignedOrganization = new COCTMT090003UV01Organization(); assignedOrganization.setDeterminerCode("INSTANCE"); assignedOrganization.setClassCode("ORG"); EN organizationName = new EN(); organizationName.getContent().add("IHE Portal"); assignedOrganization.getName().add(organizationName); assignedEntity.setAssignedOrganization( objectFactory.createCOCTMT090003UV01AssignedEntityAssignedOrganization(assignedOrganization)); custodian.setAssignedEntity(assignedEntity); registrationEvent.setCustodian(custodian); // Set Subject info... subject.getTypeCode().add("SUBJ"); subject.setRegistrationEvent(registrationEvent); PRPAIN201301UV02MFMIMT700701UV01ControlActProcess controlAct = new PRPAIN201301UV02MFMIMT700701UV01ControlActProcess(); CD controlActProcessCode = new CD(); controlActProcessCode.setCode("PRPA_TE201301UV02"); controlActProcessCode.setCodeSystem("2.16.840.1.113883.1.6"); controlAct.setCode(controlActProcessCode); controlAct.setClassCode(ActClassControlAct.CACT); controlAct.setMoodCode(XActMoodIntentEvent.EVN); controlAct.getSubject().add(subject); pRPA_IN201301UV02.setControlActProcess(controlAct); logIti44AuditMsg(constructedPatientId.getExtension() + "^^^&" + constructedPatientId.getRoot() + "&" + PIXManager.iExHubAssigningAuthority); UUID logMsgId = null; if (logPixRequestMessages) { logMsgId = UUID.randomUUID(); OMElement requestElement = pixManagerStub.toOM(pRPA_IN201301UV02, pixManagerStub .optimizeContent(new javax.xml.namespace.QName("urn:hl7-org:v3", "PRPA_IN201301UV02")), new javax.xml.namespace.QName("urn:hl7-org:v3", "PRPA_IN201301UV02")); Files.write(Paths.get(logOutputPath + logMsgId.toString() + "_PIXRegisterPatientRequest.xml"), requestElement.toString().getBytes()); } MCCIIN000002UV01 response = pixManagerStub.pIXManager_PRPA_IN201301UV02(pRPA_IN201301UV02); if (logPixResponseMessages) { OMElement responseElement = pixManagerStub.toOM(response, pixManagerStub .optimizeContent(new javax.xml.namespace.QName("urn:hl7-org:v3", "MCCI_IN000002UV01")), new javax.xml.namespace.QName("urn:hl7-org:v3", "MCCI_IN000002UV01")); Files.write(Paths .get(logOutputPath + ((logMsgId == null) ? UUID.randomUUID().toString() : logMsgId.toString()) + "_PIXRegisterPatientResponse.xml"), responseElement.toString().getBytes()); } return response; }
From source file:org.iexhub.connectors.PIXManager.java
License:Apache License
/** * @param givenName/*w w w.j av a2 s. com*/ * @param familyName * @param middleName * @param dateOfBirth * @param gender * @param patientId * @return * @throws IOException */ public MCCIIN000002UV01 registerPatient(String givenName, String familyName, String middleName, String dateOfBirth, String gender, String patientId) throws IOException { if ((familyName == null) || (familyName.length() == 0)) { throw new FamilyNameParamMissingException("FamilyName parameter is required"); } PRPAIN201301UV02 pRPA_IN201301UV02 = new PRPAIN201301UV02(); // ITS version... pRPA_IN201301UV02.setITSVersion("XML_1.0"); // ID... II messageId = new II(); messageId.setRoot(iExHubDomainOid); messageId.setExtension(UUID.randomUUID().toString()); pRPA_IN201301UV02.setId(messageId); // Creation time... DateTime dt = new DateTime(DateTimeZone.UTC); TS creationTime = new TS(); StringBuilder creationTimeBuilder = new StringBuilder(); creationTimeBuilder.append(dt.getYear()); creationTimeBuilder.append((dt.getMonthOfYear() < 10) ? ("0" + dt.getMonthOfYear()) : dt.getMonthOfYear()); creationTimeBuilder.append((dt.getDayOfMonth() < 10) ? ("0" + dt.getDayOfMonth()) : dt.getDayOfMonth()); creationTimeBuilder.append((dt.getHourOfDay() < 10) ? ("0" + dt.getHourOfDay()) : dt.getHourOfDay()); creationTimeBuilder .append((dt.getMinuteOfHour() < 10) ? ("0" + dt.getMinuteOfHour()) : dt.getMinuteOfHour()); creationTimeBuilder .append((dt.getSecondOfMinute() < 10) ? ("0" + dt.getSecondOfMinute()) : dt.getSecondOfMinute()); creationTime.setValue(creationTimeBuilder.toString()); pRPA_IN201301UV02.setCreationTime(creationTime); // Interaction ID... II interactionId = new II(); interactionId.setRoot("2.16.840.1.113883.1.6"); interactionId.setExtension("PRPA_IN201301UV02"); pRPA_IN201301UV02.setInteractionId(interactionId); // Processing code... CS processingCode = new CS(); processingCode.setCode("P"); pRPA_IN201301UV02.setProcessingCode(processingCode); // Processing mode code... CS processingModeCode = new CS(); processingModeCode.setCode("T"); pRPA_IN201301UV02.setProcessingModeCode(processingModeCode); // Accept ack code... CS acceptAckCode = new CS(); acceptAckCode.setCode("AL"); pRPA_IN201301UV02.setAcceptAckCode(acceptAckCode); // Create receiver... MCCIMT000100UV01Receiver receiver = new MCCIMT000100UV01Receiver(); receiver.setTypeCode(CommunicationFunctionType.RCV); MCCIMT000100UV01Device receiverDevice = new MCCIMT000100UV01Device(); receiverDevice.setClassCode(EntityClassDevice.DEV); receiverDevice.setDeterminerCode("INSTANCE"); II receiverDeviceId = new II(); receiverDeviceId.setRoot(receiverApplicationName); receiverDevice.getId().add(receiverDeviceId); MCCIMT000100UV01Agent asAgent = new MCCIMT000100UV01Agent(); asAgent.getClassCode().add("AGNT"); MCCIMT000100UV01Organization representedOrganization = new MCCIMT000100UV01Organization(); representedOrganization.setDeterminerCode("INSTANCE"); representedOrganization.setClassCode("ORG"); II representedOrganizationId = new II(); representedOrganizationId.setRoot(PIXManager.receiverApplicationRepresentedOrganization); representedOrganization.getId().add(representedOrganizationId); asAgent.setRepresentedOrganization( objectFactory.createMCCIMT000100UV01AgentRepresentedOrganization(representedOrganization)); receiverDevice.setAsAgent(objectFactory.createMCCIMT000100UV01DeviceAsAgent(asAgent)); receiver.setDevice(receiverDevice); pRPA_IN201301UV02.getReceiver().add(receiver); // Create sender... MCCIMT000100UV01Sender sender = new MCCIMT000100UV01Sender(); sender.setTypeCode(CommunicationFunctionType.SND); MCCIMT000100UV01Device senderDevice = new MCCIMT000100UV01Device(); senderDevice.setClassCode(EntityClassDevice.DEV); senderDevice.setDeterminerCode("INSTANCE"); II senderDeviceId = new II(); senderDeviceId.setRoot(PIXManager.iExHubSenderDeviceId); senderDevice.getId().add(senderDeviceId); MCCIMT000100UV01Agent senderAsAgent = new MCCIMT000100UV01Agent(); senderAsAgent.getClassCode().add("AGNT"); MCCIMT000100UV01Organization senderRepresentedOrganization = new MCCIMT000100UV01Organization(); senderRepresentedOrganization.setDeterminerCode("INSTANCE"); senderRepresentedOrganization.setClassCode("ORG"); II senderRepresentedOrganizationId = new II(); senderRepresentedOrganizationId.setRoot(PIXManager.iExHubDomainOid); senderRepresentedOrganization.getId().add(senderRepresentedOrganizationId); senderAsAgent.setRepresentedOrganization( objectFactory.createMCCIMT000100UV01AgentRepresentedOrganization(senderRepresentedOrganization)); senderDevice.setAsAgent(objectFactory.createMCCIMT000100UV01DeviceAsAgent(senderAsAgent)); sender.setDevice(senderDevice); pRPA_IN201301UV02.setSender(sender); PRPAIN201301UV02MFMIMT700701UV01Subject1 subject = new PRPAIN201301UV02MFMIMT700701UV01Subject1(); // Create Registration Event... PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent registrationEvent = new PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent(); registrationEvent.getClassCode().add("REG"); registrationEvent.getMoodCode().add("EVN"); registrationEvent.getNullFlavor().add("NA"); CS statusCode = new CS(); statusCode.setCode("active"); registrationEvent.setStatusCode(statusCode); PRPAIN201301UV02MFMIMT700701UV01Subject2 subject1 = new PRPAIN201301UV02MFMIMT700701UV01Subject2(); subject1.setTypeCode(ParticipationTargetSubject.SBJ); // Create Patient... PRPAMT201301UV02Patient patient = new PRPAMT201301UV02Patient(); patient.getClassCode().add("PAT"); II constructedPatientId = new II(); constructedPatientId.setRoot(PIXManager.patientIdAssigningAuthority); constructedPatientId.setExtension(UUID.randomUUID().toString()); constructedPatientId.setAssigningAuthorityName(PIXManager.iExHubAssigningAuthority); patient.getId().add(constructedPatientId); CS patientStatusCode = new CS(); patientStatusCode.setCode("active"); patient.setStatusCode(patientStatusCode); // Create PatientPerson... PRPAMT201301UV02Person patientPerson = new PRPAMT201301UV02Person(); // // Other ID's specified... // if (fhirIdentifiers != null) // { // for (IdentifierDt fhirId : fhirIdentifiers) // { // PRPAMT201301UV02OtherIDs asOtherId = new PRPAMT201301UV02OtherIDs(); // asOtherId.getClassCode().add("SD"); // II otherId = new II(); // otherId.setRoot(fhirId.getSystemElement().getValueAsString()); // otherId.setExtension(fhirId.getValue()); // asOtherId.getId().add(otherId); // // COCTMT150002UV01Organization scopingOrg = new COCTMT150002UV01Organization(); // scopingOrg.setClassCode("ORG"); // scopingOrg.setDeterminerCode("INSTANCE"); // II scopingOrgId = new II(); // scopingOrgId.setRoot(fhirId.getSystemElement().getValueAsString()); // scopingOrg.getId().add(scopingOrgId); // asOtherId.setScopingOrganization(scopingOrg); // // patientPerson.getAsOtherIDs().add(asOtherId); // } // } EnFamily enFamily = null; if ((familyName != null) && (familyName.length() > 0)) { enFamily = new EnFamily(); enFamily.getContent().add(familyName); } EnGiven enGiven = null; if ((givenName != null) && (givenName.length() > 0)) { enGiven = new EnGiven(); if ((middleName != null) && (middleName.length() > 0)) { enGiven.getContent().add(givenName + " " + middleName); } else { enGiven.getContent().add(givenName); } } PN patientName = new PN(); patientName.getContent().add(objectFactory.createENFamily(enFamily)); if (enGiven != null) { patientName.getContent().add(objectFactory.createENGiven(enGiven)); } patientPerson.getName().add(patientName); if ((gender != null) && (gender.length() > 0)) { CE adminGenderCode = new CE(); adminGenderCode.setCode(gender); adminGenderCode.setCodeSystem("2.16.840.1.113883.5.1"); patientPerson.setAdministrativeGenderCode(adminGenderCode); } else { CE adminGenderCode = new CE(); adminGenderCode.getNullFlavor().add("UNK"); adminGenderCode.setCodeSystem("2.16.840.1.113883.5.1"); patientPerson.setAdministrativeGenderCode(adminGenderCode); } patientPerson.getClassCode().add("PSN"); patientPerson.setDeterminerCode("INSTANCE"); if (dateOfBirth != null) { // Try several formats for date parsing... DateTimeFormatter formatter = null; DateTime birthDateTime = null; try { formatter = DateTimeFormat.forPattern("MM/dd/yyyy"); birthDateTime = formatter.parseDateTime(dateOfBirth); } catch (Exception e) { try { formatter = DateTimeFormat.forPattern("yyyy-MM-dd"); birthDateTime = formatter.parseDateTime(dateOfBirth); } catch (Exception e2) { throw e2; } } StringBuilder birthDateBuilder = new StringBuilder(); birthDateBuilder.append(birthDateTime.getYear()); birthDateBuilder.append((birthDateTime.getMonthOfYear() < 10) ? ("0" + birthDateTime.getMonthOfYear()) : birthDateTime.getMonthOfYear()); birthDateBuilder.append((birthDateTime.getDayOfMonth() < 10) ? ("0" + birthDateTime.getDayOfMonth()) : birthDateTime.getDayOfMonth()); TS birthTime = new TS(); birthTime.setValue(birthDateBuilder.toString()); patientPerson.setBirthTime(birthTime); } JAXBElement<PRPAMT201301UV02Person> patientPersonElement = objectFactory .createPRPAMT201301UV02PatientPatientPerson(patientPerson); patient.setPatientPerson(patientPersonElement); // Create ProviderOrganization... COCTMT150003UV03Organization providerOrganization = new COCTMT150003UV03Organization(); providerOrganization.setDeterminerCode("INSTANCE"); providerOrganization.setClassCode("ORG"); II providerId = new II(); providerId.setRoot(providerOrganizationOid); providerOrganization.getId().add(providerId); ON providerName = new ON(); providerName.getContent().add(providerOrganizationName); providerOrganization.getName().add(providerName); COCTMT150003UV03ContactParty contactParty = new COCTMT150003UV03ContactParty(); contactParty.setClassCode(RoleClassContact.CON); TEL contactPartyTelecom = new TEL(); contactPartyTelecom.setValue(providerOrganizationContactTelecom); contactParty.getTelecom().add(contactPartyTelecom); providerOrganization.getContactParty().add(contactParty); patient.setProviderOrganization(providerOrganization); subject1.setPatient(patient); registrationEvent.setSubject1(subject1); // Create Custodian info... MFMIMT700701UV01Custodian custodian = new MFMIMT700701UV01Custodian(); custodian.getTypeCode().add("CST"); COCTMT090003UV01AssignedEntity assignedEntity = new COCTMT090003UV01AssignedEntity(); assignedEntity.setClassCode("ASSIGNED"); II assignedEntityId = new II(); assignedEntityId.setRoot(iExHubDomainOid); assignedEntity.getId().add(assignedEntityId); COCTMT090003UV01Organization assignedOrganization = new COCTMT090003UV01Organization(); assignedOrganization.setDeterminerCode("INSTANCE"); assignedOrganization.setClassCode("ORG"); EN organizationName = new EN(); organizationName.getContent().add("IHE Portal"); assignedOrganization.getName().add(organizationName); assignedEntity.setAssignedOrganization( objectFactory.createCOCTMT090003UV01AssignedEntityAssignedOrganization(assignedOrganization)); custodian.setAssignedEntity(assignedEntity); registrationEvent.setCustodian(custodian); // Set Subject info... subject.getTypeCode().add("SUBJ"); subject.setRegistrationEvent(registrationEvent); PRPAIN201301UV02MFMIMT700701UV01ControlActProcess controlAct = new PRPAIN201301UV02MFMIMT700701UV01ControlActProcess(); CD controlActProcessCode = new CD(); controlActProcessCode.setCode("PRPA_TE201301UV02"); controlActProcessCode.setCodeSystem("2.16.840.1.113883.1.6"); controlAct.setCode(controlActProcessCode); controlAct.setClassCode(ActClassControlAct.CACT); controlAct.setMoodCode(XActMoodIntentEvent.EVN); controlAct.getSubject().add(subject); pRPA_IN201301UV02.setControlActProcess(controlAct); logIti44AuditMsg( patientId + "^^^&" + PIXManager.iExHubDomainOid + "&" + PIXManager.iExHubAssigningAuthority); UUID logMsgId = null; if (logPixRequestMessages) { logMsgId = UUID.randomUUID(); OMElement requestElement = pixManagerStub.toOM(pRPA_IN201301UV02, pixManagerStub .optimizeContent(new javax.xml.namespace.QName("urn:hl7-org:v3", "PRPA_IN201301UV02")), new javax.xml.namespace.QName("urn:hl7-org:v3", "PRPA_IN201301UV02")); Files.write(Paths.get(logOutputPath + logMsgId.toString() + "_PIXRegisterPatientRequest.xml"), requestElement.toString().getBytes()); } MCCIIN000002UV01 response = pixManagerStub.pIXManager_PRPA_IN201301UV02(pRPA_IN201301UV02); if (logPixResponseMessages) { OMElement responseElement = pixManagerStub.toOM(response, pixManagerStub .optimizeContent(new javax.xml.namespace.QName("urn:hl7-org:v3", "MCCI_IN000002UV01")), new javax.xml.namespace.QName("urn:hl7-org:v3", "MCCI_IN000002UV01")); Files.write(Paths .get(logOutputPath + ((logMsgId == null) ? UUID.randomUUID().toString() : logMsgId.toString()) + "_PIXRegisterPatientResponse.xml"), responseElement.toString().getBytes()); } return response; }
From source file:org.iexhub.connectors.XdsBRepositoryManager.java
License:Apache License
/** * @param cdaDocument//from www .j a v a2 s.c o m * @param mimeType * @return * @throws Exception */ public RegistryResponseType provideAndRegisterDocumentSet(byte[] cdaDocument, String mimeType) throws Exception { // Support only for a single document per submission set... if (mimeType.compareToIgnoreCase("text/xml") != 0) { throw new DocumentTypeUnsupportedException( "Only XML documents currently supported for ProvideAndRegisterDocumentSet"); } try { ProvideAndRegisterDocumentSetRequestType documentSetRequest = new ProvideAndRegisterDocumentSetRequestType(); // Create SubmitObjectsRequest... SubmitObjectsRequest submitObjectsRequest = new SubmitObjectsRequest(); // Create RegistryObjectList... RegistryObjectListType registryObjectList = new RegistryObjectListType(); // Create ExtrinsicObject... DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance(); DocumentBuilder dBuilder = dbFactory.newDocumentBuilder(); InputStream is = new ByteArrayInputStream(cdaDocument); BufferedReader reader = new BufferedReader(new InputStreamReader(is)); Document doc = dBuilder.parse(new InputSource(reader)); String documentId = UUID.randomUUID().toString(); ExtrinsicObjectType extrinsicObject = new ExtrinsicObjectType(); extrinsicObject.setId(documentId); extrinsicObject.setMimeType(mimeType); extrinsicObject.setObjectType("urn:uuid:7edca82f-054d-47f2-a032-9b2a5b5186c1"); // Create creationTime rim:Slot... ValueListType valueList = null; SlotType1 slot = new SlotType1(); slot.setName("creationTime"); XPath xPath = getCustomXPath(); NodeList nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:effectiveTime", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("value")); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create languageCode rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:languageCode", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("languageCode"); valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("code")); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create serviceStartTime rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:documentationOf/hl7:serviceEvent/hl7:effectiveTime/hl7:low", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("serviceStartTime"); valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("value")); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create serviceStopTime rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:documentationOf/hl7:serviceEvent/hl7:effectiveTime/high", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("serviceStopTime"); valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("value")); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create sourcePatientId rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:id", doc.getDocumentElement(), XPathConstants.NODESET); String patientId = null; if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("sourcePatientId"); valueList = new ValueListType(); patientId = ((Element) nodes.item(0)).getAttribute("extension") + "^^^&" + ((Element) nodes.item(0)).getAttribute("root") + "&ISO"; valueList.getValue().add(patientId); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create sourcePatientInfo rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:name/hl7:family", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("sourcePatientInfo"); valueList = new ValueListType(); valueList.getValue().add("PID-3|" + patientId); StringBuilder name = new StringBuilder(); name.append("PID-5|" + ((Element) nodes.item(0)).getTextContent() + "^"); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:name/hl7:given", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { name.append(((Element) nodes.item(0)).getTextContent() + "^^"); } else { name.append("^^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:name/hl7:prefix", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { name.append(((Element) nodes.item(0)).getTextContent() + "^"); } else { name.append("^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:name/hl7:suffix", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { name.append(((Element) nodes.item(0)).getTextContent()); } valueList.getValue().add(name.toString()); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:birthTime", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { valueList.getValue().add("PID-7|" + ((Element) nodes.item(0)).getAttribute("value")); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:administrativeGenderCode", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { valueList.getValue().add("PID-8|" + ((Element) nodes.item(0)).getAttribute("code")); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { StringBuilder address = new StringBuilder(); address.append("PID-11|"); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:streetAddressLine", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent() + "^^"); } else { address.append("^^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:city", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent() + "^"); } else { address.append("^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:state", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent() + "^"); } else { address.append("^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:postalCode", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent() + "^"); } else { address.append("^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:country", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent()); } else { address.append("^"); } valueList.getValue().add(address.toString()); } slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create rim:Name if necessary... // xPath = XPathFactory.newInstance().newXPath(); // nodes = (NodeList)xPath.evaluate("/ClinicalDocument/title", // doc.getDocumentElement(), // XPathConstants.NODESET); // if (nodes.getLength() > 0) // { // InternationalStringType docName = new InternationalStringType(); // LocalizedStringType localizedName = new LocalizedStringType(); // localizedName.setValue(((Element)nodes.item(0)).getNodeValue()); // docName.getLocalizedString().add(localizedName); // extrinsicObject.setName(docName); // } // Create rim:Description if necessary... // xPath = XPathFactory.newInstance().newXPath(); // nodes = (NodeList)xPath.evaluate("/ClinicalDocument/comments", // doc.getDocumentElement(), // XPathConstants.NODESET); // if (nodes.getLength() > 0) // { // InternationalStringType docComments = new InternationalStringType(); // LocalizedStringType localizedComments = new LocalizedStringType(); // localizedComments.setValue(((Element)nodes.item(0)).getTextContent()); // docComments.getLocalizedString().add(localizedComments); // extrinsicObject.setDescription(docComments); // } // Create classifications - start with document author(s)... ArrayList<ClassificationType> documentAuthorClassifications = new ArrayList<ClassificationType>(); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:author", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { for (int i = 0; i < nodes.getLength(); ++i) { ClassificationType documentAuthorClassification = new ClassificationType(); documentAuthorClassification.setId(UUID.randomUUID().toString()); documentAuthorClassification.setClassificationScheme(documentAuthorClassificationScheme); documentAuthorClassification.setClassifiedObject(documentId); documentAuthorClassification.setNodeRepresentation(""); slot = new SlotType1(); slot.setName("authorPerson"); // authorPerson rim:Slot StringBuilder authorName = new StringBuilder(); xPath = getCustomXPath(); NodeList subNodes = (NodeList) xPath.evaluate("hl7:assignedAuthor/hl7:assignedPerson", nodes.item(i).getChildNodes(), XPathConstants.NODESET); if (subNodes.getLength() > 0) { xPath = getCustomXPath(); NodeList assignedPersonSubNodes = (NodeList) xPath.evaluate("hl7:name/hl7:prefix", subNodes.item(0).getChildNodes(), XPathConstants.NODESET); if (assignedPersonSubNodes.getLength() > 0) { authorName.append(((Element) assignedPersonSubNodes.item(0)).getTextContent() + " "); } xPath = getCustomXPath(); assignedPersonSubNodes = (NodeList) xPath.evaluate("hl7:name/hl7:given", subNodes.item(0).getChildNodes(), XPathConstants.NODESET); if (assignedPersonSubNodes.getLength() > 0) { authorName.append(((Element) assignedPersonSubNodes.item(0)).getTextContent() + " "); } xPath = getCustomXPath(); assignedPersonSubNodes = (NodeList) xPath.evaluate("hl7:name/hl7:family", subNodes.item(0).getChildNodes(), XPathConstants.NODESET); if (assignedPersonSubNodes.getLength() > 0) { authorName.append(((Element) assignedPersonSubNodes.item(0)).getTextContent()); } xPath = getCustomXPath(); assignedPersonSubNodes = (NodeList) xPath.evaluate("hl7:name/hl7:suffix", subNodes.item(0).getChildNodes(), XPathConstants.NODESET); if (assignedPersonSubNodes.getLength() > 0) { authorName.append(" " + ((Element) assignedPersonSubNodes.item(0)).getTextContent()); } } else { // If assignedAuthor is not present, then check for representedOrganization/name... subNodes = (NodeList) xPath.evaluate( "hl7:assignedAuthor/hl7:representedOrganization/hl7:name", nodes.item(i).getChildNodes(), XPathConstants.NODESET); xPath = XPathFactory.newInstance().newXPath(); if (subNodes.getLength() > 0) { authorName.append(((Element) subNodes.item(0)).getTextContent()); } } valueList = new ValueListType(); valueList.getValue().add(authorName.toString()); slot.setValueList(valueList); documentAuthorClassification.getSlot().add(slot); documentAuthorClassifications.add(documentAuthorClassification); extrinsicObject.getClassification().add(documentAuthorClassification); } } // ClassCodes classification... ClassificationType classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentClassCodesClassificationScheme); classification.setClassifiedObject(documentId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:code", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { // from properties file classification.setNodeRepresentation(documentClassCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); // dynamically from the document or from properties file valueList.getValue().add(documentClassCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { InternationalStringType text = new InternationalStringType(); LocalizedStringType localizedText = new LocalizedStringType(); // dynamically from the document or from properties file localizedText.setValue(documentClassCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); } extrinsicObject.getClassification().add(classification); } // ConfidentialityCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentConfidentialityCodesClassificationScheme); classification.setClassifiedObject(documentId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:confidentialityCode", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { if (((Element) nodes.item(0)).getAttribute("code") != null) { classification.setNodeRepresentation(((Element) nodes.item(0)).getAttribute("code")); } slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("codeSystem")); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { InternationalStringType text = new InternationalStringType(); LocalizedStringType localizedText = new LocalizedStringType(); localizedText.setValue(((Element) nodes.item(0)).getAttribute("displayName")); text.getLocalizedString().add(localizedText); classification.setName(text); } extrinsicObject.getClassification().add(classification); } // FormatCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentFormatCodesClassificationScheme); classification.setClassifiedObject(documentId); classification.setNodeRepresentation(documentFormatCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentFormatCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); InternationalStringType text = new InternationalStringType(); LocalizedStringType localizedText = new LocalizedStringType(); localizedText.setValue(documentFormatCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // HealthcareFacilityTypeCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentHealthcareFacilityTypeCodesClassificationScheme); classification.setClassifiedObject(documentId); classification.setNodeRepresentation(documentHealthcareFacilityTypeCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentHealthcareFacilityTypeCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentHealthcareFacilityTypeCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // PracticeSettingCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentPracticeSettingCodesClassificationScheme); classification.setClassifiedObject(documentId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:code", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { if (((Element) nodes.item(0)).getAttribute("code") != null) { classification.setNodeRepresentation(documentPracticeSettingCodesNodeRepresentation); } slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); valueList.getValue().add(documentPracticeSettingCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentPracticeSettingCodesDisplayName); text.getLocalizedString().add(localizedText); classification.setName(text); } extrinsicObject.getClassification().add(classification); } // Type code classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentContentTypeClassificationScheme); classification.setClassifiedObject(documentId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:code", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { if (((Element) nodes.item(0)).getAttribute("code") != null) { classification.setNodeRepresentation(((Element) nodes.item(0)).getAttribute("code")); } slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("codeSystem")); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(((Element) nodes.item(0)).getAttribute("displayName")); text.getLocalizedString().add(localizedText); classification.setName(text); } extrinsicObject.getClassification().add(classification); } // Create rim:ExternalIdentifier(s) - first the XDSDocumentEntry.patientId value(s)... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:id", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { // for (int i = 0; i < nodes.getLength(); ++i) // { // ExternalIdentifierType externalIdentifierPatientId = new ExternalIdentifierType(); // externalIdentifierPatientId.setId(UUID.randomUUID().toString()); // externalIdentifierPatientId.setRegistryObject(documentId); // externalIdentifierPatientId.setIdentificationScheme(ExtrinsicObjectExternalIdentifierPatientIdIdentificationScheme); // externalIdentifierPatientId.setValue(((Element)nodes.item(i)).getAttribute("extension") // + "^^^&" // + ((Element)nodes.item(i)).getAttribute("root") // + "&ISO"); // text = new InternationalStringType(); // localizedText = new LocalizedStringType(); // localizedText.setValue(ExtrinsicObjectExternalIdentifierPatientIdName); // text.getLocalizedString().add(localizedText); // externalIdentifierPatientId.setName(text); // extrinsicObject.getExternalIdentifier().add(externalIdentifierPatientId); // } ExternalIdentifierType externalIdentifierPatientId = new ExternalIdentifierType(); externalIdentifierPatientId.setId(UUID.randomUUID().toString()); externalIdentifierPatientId.setRegistryObject(documentId); externalIdentifierPatientId .setIdentificationScheme(extrinsicObjectExternalIdentifierPatientIdIdentificationScheme); externalIdentifierPatientId.setValue(((Element) nodes.item(0)).getAttribute("extension") + "^^^&" + ((Element) nodes.item(0)).getAttribute("root") + "&ISO"); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(extrinsicObjectExternalIdentifierPatientIdName); text.getLocalizedString().add(localizedText); externalIdentifierPatientId.setName(text); extrinsicObject.getExternalIdentifier().add(externalIdentifierPatientId); } // Now the XDSDocumentEntry.uniqueId value(s)... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:id", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { // for (int i = 0; i < nodes.getLength(); ++i) // { // ExternalIdentifierType externalIdentifierPatientId = new ExternalIdentifierType(); // externalIdentifierPatientId.setId(UUID.randomUUID().toString()); // externalIdentifierPatientId.setRegistryObject(documentId); // externalIdentifierPatientId.setIdentificationScheme(ExtrinsicObjectExternalIdentifierUniqueIdIdentificationScheme); // externalIdentifierPatientId.setValue(((Element)nodes.item(i)).getAttribute("root")); // text = new InternationalStringType(); // localizedText = new LocalizedStringType(); // localizedText.setValue(ExtrinsicObjectExternalIdentifierUniqueIdName); // text.getLocalizedString().add(localizedText); // externalIdentifierPatientId.setName(text); // extrinsicObject.getExternalIdentifier().add(externalIdentifierPatientId); // } ExternalIdentifierType externalIdentifierDocumentId = new ExternalIdentifierType(); externalIdentifierDocumentId.setId(UUID.randomUUID().toString()); externalIdentifierDocumentId.setRegistryObject(documentId); externalIdentifierDocumentId .setIdentificationScheme(extrinsicObjectExternalIdentifierUniqueIdIdentificationScheme); if (testMode) { DateTime testDocId = DateTime.now(DateTimeZone.UTC); externalIdentifierDocumentId .setValue(((Element) nodes.item(0)).getAttribute("root") + "^" + testDocId.getMillis()); } else { externalIdentifierDocumentId.setValue(((Element) nodes.item(0)).getAttribute("root") + "^" + ((Element) nodes.item(0)).getAttribute("extension")); } text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(extrinsicObjectExternalIdentifierUniqueIdName); text.getLocalizedString().add(localizedText); externalIdentifierDocumentId.setName(text); extrinsicObject.getExternalIdentifier().add(externalIdentifierDocumentId); } registryObjectList.getIdentifiable().add(objectFactory.createExtrinsicObject(extrinsicObject)); // Create rim:RegistryPackage... String submissionSetId = UUID.randomUUID().toString(); RegistryPackageType registryPackage = new RegistryPackageType(); registryPackage.setId(submissionSetId); // Create rim:RegistryPackage/submissionTime attribute... slot = new SlotType1(); slot.setName("submissionTime"); valueList = new ValueListType(); DateTime now = new DateTime(DateTimeZone.UTC); StringBuilder timeBuilder = new StringBuilder(); timeBuilder.append(now.getYear()); timeBuilder.append((now.getMonthOfYear() < 10) ? ("0" + now.getMonthOfYear()) : now.getMonthOfYear()); timeBuilder.append((now.getDayOfMonth() < 10) ? ("0" + now.getDayOfMonth()) : now.getDayOfMonth()); timeBuilder.append((now.getHourOfDay() < 10) ? ("0" + now.getHourOfDay()) : now.getHourOfDay()); timeBuilder .append((now.getMinuteOfHour() < 10) ? ("0" + now.getMinuteOfHour()) : now.getMinuteOfHour()); valueList.getValue().add(timeBuilder.toString()); slot.setValueList(valueList); registryPackage.getSlot().add(slot); // Recreate authorName classification(s) in rim:RegistryPackage... for (ClassificationType registryClassification : documentAuthorClassifications) { ClassificationType newClassification = new ClassificationType(); newClassification.setId(UUID.randomUUID().toString()); newClassification.setClassificationScheme(registryPackageAuthorClassificationScheme); newClassification.setClassifiedObject(submissionSetId); newClassification.setNodeRepresentation(""); if (!registryClassification.getSlot().isEmpty()) { slot = new SlotType1(); slot.setName(registryClassification.getSlot().get(0).getName()); slot.setValueList(registryClassification.getSlot().get(0).getValueList()); newClassification.getSlot().add(slot); } registryPackage.getClassification().add(newClassification); } // ContentTypeCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(registryPackageContentTypeCodesClassificationScheme); classification.setClassifiedObject(submissionSetId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:code", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { if (((Element) nodes.item(0)).getAttribute("code") != null) { classification.setNodeRepresentation(((Element) nodes.item(0)).getAttribute("code")); } slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("codeSystem")); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(((Element) nodes.item(0)).getAttribute("displayName")); text.getLocalizedString().add(localizedText); classification.setName(text); } registryPackage.getClassification().add(classification); } // ExternalIdentifiers - first XDSSubmissionSet.uniqueId... ExternalIdentifierType submissionSetUniqueId = new ExternalIdentifierType(); submissionSetUniqueId.setId(UUID.randomUUID().toString()); submissionSetUniqueId.setRegistryObject(submissionSetId); submissionSetUniqueId.setIdentificationScheme(registryPackageSubmissionSetUniqueIdIdentificationScheme); DateTime oidTimeValue = DateTime.now(DateTimeZone.UTC); submissionSetUniqueId.setValue(submissionSetOid + "." + oidTimeValue.getMillis()); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetUniqueIdName); text.getLocalizedString().add(localizedText); submissionSetUniqueId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetUniqueId); // Now XDSSubmissionSet.sourceId... ExternalIdentifierType submissionSetSourceId = new ExternalIdentifierType(); submissionSetSourceId.setId(UUID.randomUUID().toString()); submissionSetSourceId.setRegistryObject(submissionSetId); submissionSetSourceId.setIdentificationScheme(registryPackageSubmissionSetSourceIdIdentificationScheme); submissionSetSourceId.setValue(iExHubDomainOid); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetSourceIdName); text.getLocalizedString().add(localizedText); submissionSetSourceId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetSourceId); // Now XDSSubmissionSet.patientId... ExternalIdentifierType submissionSetPatientId = new ExternalIdentifierType(); submissionSetPatientId.setId(UUID.randomUUID().toString()); submissionSetPatientId.setRegistryObject(submissionSetId); submissionSetPatientId .setIdentificationScheme(registryPackageSubmissionSetPatientIdIdentificationScheme); submissionSetPatientId.setValue(patientId); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetPatientIdName); text.getLocalizedString().add(localizedText); submissionSetPatientId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetPatientId); registryObjectList.getIdentifiable().add(objectFactory.createRegistryPackage(registryPackage)); // Create SubmissionSet classification for RegistryObjectList... ClassificationType submissionSetClassification = new ClassificationType(); submissionSetClassification.setId(UUID.randomUUID().toString()); submissionSetClassification.setClassifiedObject(submissionSetId); submissionSetClassification.setClassificationNode(registryObjectListSubmissionSetClassificationNode); registryObjectList.getIdentifiable() .add(objectFactory.createClassification(submissionSetClassification)); // Create SubmissionSet Association for RegistryObjectList... AssociationType1 submissionSetAssociation = new AssociationType1(); submissionSetAssociation.setId(/*UUID.randomUUID().toString()*/ "as01"); submissionSetAssociation .setAssociationType("urn:oasis:names:tc:ebxml-regrep:AssociationType:HasMember"); submissionSetAssociation.setSourceObject(submissionSetId); submissionSetAssociation.setTargetObject(documentId); slot = new SlotType1(); slot.setName("SubmissionSetStatus"); valueList = new ValueListType(); valueList.getValue().add("Original"); slot.setValueList(valueList); submissionSetAssociation.getSlot().add(slot); registryObjectList.getIdentifiable().add(objectFactory.createAssociation(submissionSetAssociation)); submitObjectsRequest.setRegistryObjectList(registryObjectList); documentSetRequest.setSubmitObjectsRequest(submitObjectsRequest); // Add document to message... XdsBDocumentRepository.ihe.iti.xds_b._2007.ProvideAndRegisterDocumentSetRequestType.Document documentForMessage = new XdsBDocumentRepository.ihe.iti.xds_b._2007.ProvideAndRegisterDocumentSetRequestType.Document(); documentForMessage.setValue(cdaDocument); documentForMessage.setId(documentId); documentSetRequest.getDocument().add(documentForMessage); logIti41AuditMsg(submissionSetId, patientId); if (logXdsBRequestMessages) { OMElement requestElement = repositoryStub.toOM(documentSetRequest, repositoryStub.optimizeContent(new javax.xml.namespace.QName("urn:ihe:iti:xds-b:2007", "ProvideAndRegisterDocumentSetRequest")), new javax.xml.namespace.QName("urn:ihe:iti:xds-b:2007", "ProvideAndRegisterDocumentSetRequest")); Files.write(Paths.get(logOutputPath + documentId + "_ProvideAndRegisterDocumentSetRequest.xml"), requestElement.toString().getBytes()); } return repositoryStub.documentRepository_ProvideAndRegisterDocumentSetB(documentSetRequest); } catch (Exception e) { throw e; } }
From source file:org.iexhub.connectors.XdsBRepositoryManager.java
License:Apache License
/** * @param contract//from w w w. j a va 2s . co m * @param xmlContent * @param mimeType * @param updateDocument * @return * @throws Exception */ public RegistryResponseType provideAndRegisterDocumentSet(Contract contract, byte[] xmlContent, String mimeType, boolean updateDocument) throws Exception { try { UUID previousDocumentUuid = (updateDocument) ? UUID.fromString(contract.getId().getIdPart()) : null; UUID newDocumentUuid = UUID.randomUUID(); // long hi = entryUuid.getMostSignificantBits(); // long lo = entryUuid.getLeastSignificantBits(); // byte[] bytes = ByteBuffer.allocate(16).putLong(hi).putLong(lo).array(); // BigInteger big = new BigInteger(bytes); String documentIdToUse = /*"urn:oid:" +*/ contract.getIdentifier().getValue(); //"2.25." // + big.toString().replace('-', // '0'); ProvideAndRegisterDocumentSetRequestType documentSetRequest = new ProvideAndRegisterDocumentSetRequestType(); // Create SubmitObjectsRequest... SubmitObjectsRequest submitObjectsRequest = new SubmitObjectsRequest(); // Create RegistryObjectList... RegistryObjectListType registryObjectList = new RegistryObjectListType(); // Create ExtrinsicObject... ExtrinsicObjectType extrinsicObject = new ExtrinsicObjectType(); extrinsicObject.setId("urn:uuid:" + newDocumentUuid.toString()); extrinsicObject.setMimeType(mimeType); extrinsicObject.setObjectType("urn:uuid:7edca82f-054d-47f2-a032-9b2a5b5186c1"); // Create creationTime rim:Slot... ValueListType valueList = null; SlotType1 slot = new SlotType1(); slot.setName("creationTime"); valueList = new ValueListType(); Calendar dateVal = Calendar.getInstance(); dateVal.setTime(contract.getIssued()); valueList.getValue() .add(new StringBuilder().append(dateVal.get(Calendar.YEAR)) .append(String.format("%02d", (dateVal.get(Calendar.MONTH) + 1))) .append(String.format("%02d", dateVal.get(Calendar.DAY_OF_MONTH))) .append(String.format("%02d", dateVal.get(Calendar.HOUR))) .append(String.format("%02d", dateVal.get(Calendar.MINUTE))) .append(String.format("%02d", dateVal.get(Calendar.SECOND))).toString()); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create languageCode rim:Slot... slot = new SlotType1(); slot.setName("languageCode"); valueList = new ValueListType(); valueList.getValue().add("en-US"); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create serviceStartTime rim:Slot... slot = new SlotType1(); slot.setName("serviceStartTime"); valueList = new ValueListType(); dateVal.setTime(contract.getTermFirstRep().getApplies().getStart()); valueList.getValue() .add(new StringBuilder().append(dateVal.get(Calendar.YEAR)) .append(String.format("%02d", (dateVal.get(Calendar.MONTH) + 1))) .append(String.format("%02d", dateVal.get(Calendar.DAY_OF_MONTH))) .append(String.format("%02d", dateVal.get(Calendar.HOUR))) .append(String.format("%02d", dateVal.get(Calendar.MINUTE))) .append(String.format("%02d", dateVal.get(Calendar.SECOND))).toString()); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create serviceStopTime rim:Slot... slot = new SlotType1(); slot.setName("serviceStopTime"); valueList = new ValueListType(); dateVal.setTime(contract.getTermFirstRep().getApplies().getEnd()); valueList.getValue() .add(new StringBuilder().append(dateVal.get(Calendar.YEAR)) .append(String.format("%02d", (dateVal.get(Calendar.MONTH) + 1))) .append(String.format("%02d", dateVal.get(Calendar.DAY_OF_MONTH))) .append(String.format("%02d", dateVal.get(Calendar.HOUR))) .append(String.format("%02d", dateVal.get(Calendar.MINUTE))) .append(String.format("%02d", dateVal.get(Calendar.SECOND))).toString()); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create sourcePatientId rim:Slot... ResourceReferenceDt consentSubjectRef = contract.getSubject().get(0); IBaseResource referencedSubject = consentSubjectRef.getResource(); String referencedId = referencedSubject.getIdElement().getIdPart(); Patient patient = (getContainedResource(Patient.class, contract.getContained().getContainedResources(), referencedId) == null) ? null : (Patient) getContainedResource(Patient.class, contract.getContained().getContainedResources(), referencedId); slot = new SlotType1(); slot.setName("sourcePatientId"); valueList = new ValueListType(); String patientId = null; patientId = referencedId + "^^^&" + iExHubDomainOid + "&ISO"; valueList.getValue().add(patientId); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create sourcePatientInfo rim:Slot... if ((patient.getName() != null) && (!patient.getName().isEmpty())) { slot = new SlotType1(); slot.setName("sourcePatientInfo"); valueList = new ValueListType(); valueList.getValue().add("PID-3|" + referencedId + "^^^&" + iExHubDomainOid + "&ISO"); StringBuilder name = new StringBuilder(); name.append("PID-5|" + ((patient.getName().get(0).getFamilyAsSingleString() != null) ? patient.getName().get(0).getFamilyAsSingleString() : "") + "^"); name.append(((patient.getName().get(0).getGivenAsSingleString() != null) ? patient.getName().get(0).getGivenAsSingleString() : "") + "^^"); name.append(((patient.getName().get(0).getPrefixAsSingleString() != null) ? patient.getName().get(0).getPrefixAsSingleString() : "") + "^"); name.append(((patient.getName().get(0).getSuffixAsSingleString() != null) ? patient.getName().get(0).getSuffixAsSingleString() : "")); valueList.getValue().add(name.toString()); } // Birthdate dateVal.setTime(patient.getBirthDate()); valueList.getValue() .add(new StringBuilder().append("PID-7|").append(dateVal.get(Calendar.YEAR)) .append(String.format("%02d", (dateVal.get(Calendar.MONTH) + 1))) .append(String.format("%02d", dateVal.get(Calendar.DAY_OF_MONTH))).toString()); // Administrative gender code valueList.getValue() .add("PID-8|" + ((patient.getGender().compareToIgnoreCase("female") == 0) || (patient.getGender().compareToIgnoreCase("f") == 0) ? "F" : (((patient.getGender().compareToIgnoreCase("male") == 0) || (patient.getGender().compareToIgnoreCase("m") == 0) ? "M" : "U")))); // Address info if ((patient.getAddress() != null) && (!patient.getAddress().isEmpty())) { StringBuilder address = new StringBuilder(); address.append("PID-11|"); // Street address line StringBuilder addressLine = new StringBuilder(); for (StringDt lineItem : patient.getAddress().get(0).getLine()) { addressLine.append(lineItem.getValue()); } address.append(addressLine + "^^"); // City address.append( ((patient.getAddress().get(0).getCity() != null) ? patient.getAddress().get(0).getCity() : "") + "^"); // State address.append( ((patient.getAddress().get(0).getState() != null) ? patient.getAddress().get(0).getState() : "") + "^"); // Postal code address.append(((patient.getAddress().get(0).getPostalCode() != null) ? patient.getAddress().get(0).getPostalCode() : "") + "^"); // Country address.append(((patient.getAddress().get(0).getCountry() != null) ? patient.getAddress().get(0).getCountry() : "")); valueList.getValue().add(address.toString()); } slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create classifications - start with document author(s) represented in the Contract as the patient... ArrayList<ClassificationType> documentAuthorClassifications = new ArrayList<ClassificationType>(); StringBuilder authorName = new StringBuilder(); ClassificationType documentAuthorClassification = new ClassificationType(); documentAuthorClassification.setId(UUID.randomUUID().toString()); documentAuthorClassification.setClassificationScheme(documentAuthorClassificationScheme); documentAuthorClassification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); documentAuthorClassification.setNodeRepresentation(""); slot = new SlotType1(); slot.setName("authorPerson"); // authorPerson rim:Slot // Prefix authorName.append(((patient.getName().get(0).getPrefixAsSingleString() != null) ? (patient.getName().get(0).getPrefixAsSingleString() + " ") : "")); // Given name authorName.append(((patient.getName().get(0).getGivenAsSingleString() != null) ? (patient.getName().get(0).getGivenAsSingleString() + " ") : "")); // Family name authorName.append(((patient.getName().get(0).getFamilyAsSingleString() != null) ? (patient.getName().get(0).getFamilyAsSingleString()) : "")); // Suffix authorName.append(((patient.getName().get(0).getSuffixAsSingleString() != null) ? (" " + patient.getName().get(0).getSuffixAsSingleString()) : "")); valueList = new ValueListType(); valueList.getValue().add(authorName.toString()); slot.setValueList(valueList); documentAuthorClassification.getSlot().add(slot); documentAuthorClassifications.add(documentAuthorClassification); extrinsicObject.getClassification().add(documentAuthorClassification); // ClassCodes classification... ClassificationType classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentClassCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); classification.setNodeRepresentation(documentClassCodesNodeRepresentationContract); slot = new SlotType1(); slot.setName("codingScheme"); // Code system valueList = new ValueListType(); valueList.getValue().add("1.3.6.1.4.1.21367.100.1"); slot.setValueList(valueList); classification.getSlot().add(slot); // Display name InternationalStringType text = new InternationalStringType(); LocalizedStringType localizedText = new LocalizedStringType(); localizedText.setValue("Privacy Policy Acknowledgement Document"); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // ConfidentialityCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentConfidentialityCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); // Code classification.setNodeRepresentation("N"); slot = new SlotType1(); slot.setName("codingScheme"); // Code system valueList = new ValueListType(); valueList.getValue().add("2.16.840.1.113883.5.25"); slot.setValueList(valueList); classification.getSlot().add(slot); // Display name text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue("Confidentiality Code"); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // FormatCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentFormatCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); classification.setNodeRepresentation(documentFormatCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentFormatCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentFormatCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // HealthcareFacilityTypeCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentHealthcareFacilityTypeCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); classification.setNodeRepresentation(documentHealthcareFacilityTypeCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentHealthcareFacilityTypeCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentHealthcareFacilityTypeCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // PracticeSettingCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentPracticeSettingCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); classification.setNodeRepresentation(documentPracticeSettingCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentPracticeSettingCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentPracticeSettingCodesDisplayName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // Type code classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentContentTypeClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); // Code classification.setNodeRepresentation("57016-8"); slot = new SlotType1(); slot.setName("codingScheme"); // Code system valueList = new ValueListType(); valueList.getValue().add("2.16.840.1.113883.6.1"); slot.setValueList(valueList); classification.getSlot().add(slot); // Display name text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue("Privacy Policy Acknowledgement Document"); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // Create rim:ExternalIdentifier(s) - first the XDSDocumentEntry.patientId value(s)... ExternalIdentifierType externalIdentifierPatientId = new ExternalIdentifierType(); externalIdentifierPatientId.setId(UUID.randomUUID().toString()); externalIdentifierPatientId.setRegistryObject("urn:uuid:" + newDocumentUuid.toString()); externalIdentifierPatientId .setIdentificationScheme(extrinsicObjectExternalIdentifierPatientIdIdentificationScheme); externalIdentifierPatientId.setValue(referencedId + "^^^&" + iExHubDomainOid + "&ISO"); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(extrinsicObjectExternalIdentifierPatientIdName); text.getLocalizedString().add(localizedText); externalIdentifierPatientId.setName(text); extrinsicObject.getExternalIdentifier().add(externalIdentifierPatientId); // Now the XDSDocumentEntry.uniqueId value(s)... ExternalIdentifierType externalIdentifierUniqueId = new ExternalIdentifierType(); externalIdentifierUniqueId.setId(UUID.randomUUID().toString()); externalIdentifierUniqueId.setRegistryObject("urn:uuid:" + newDocumentUuid.toString()); externalIdentifierUniqueId .setIdentificationScheme(extrinsicObjectExternalIdentifierUniqueIdIdentificationScheme); // if (testMode) // { // DateTime testDocId = DateTime.now(DateTimeZone.UTC); // externalIdentifierDocumentId.setValue(contract.getIdentifier().getSystem() // + "^" // + testDocId.getMillis()); // } // else // { externalIdentifierUniqueId.setValue(//contract.getIdentifier().getSystem() // + "^" /*+*/ documentIdToUse); // } text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(extrinsicObjectExternalIdentifierUniqueIdName); text.getLocalizedString().add(localizedText); externalIdentifierUniqueId.setName(text); extrinsicObject.getExternalIdentifier().add(externalIdentifierUniqueId); registryObjectList.getIdentifiable().add(objectFactory.createExtrinsicObject(extrinsicObject)); // Create rim:RegistryPackage... String submissionSetId = UUID.randomUUID().toString(); RegistryPackageType registryPackage = new RegistryPackageType(); registryPackage.setId(submissionSetId); // Create rim:RegistryPackage/submissionTime attribute... slot = new SlotType1(); slot.setName("submissionTime"); valueList = new ValueListType(); DateTime now = new DateTime(DateTimeZone.UTC); StringBuilder timeBuilder = new StringBuilder(); timeBuilder.append(now.getYear()); timeBuilder.append((now.getMonthOfYear() < 10) ? ("0" + now.getMonthOfYear()) : now.getMonthOfYear()); timeBuilder.append((now.getDayOfMonth() < 10) ? ("0" + now.getDayOfMonth()) : now.getDayOfMonth()); timeBuilder.append((now.getHourOfDay() < 10) ? ("0" + now.getHourOfDay()) : now.getHourOfDay()); timeBuilder .append((now.getMinuteOfHour() < 10) ? ("0" + now.getMinuteOfHour()) : now.getMinuteOfHour()); valueList.getValue().add(timeBuilder.toString()); slot.setValueList(valueList); registryPackage.getSlot().add(slot); // Recreate authorName classification(s) in rim:RegistryPackage... for (ClassificationType registryClassification : documentAuthorClassifications) { ClassificationType newClassification = new ClassificationType(); newClassification.setId(UUID.randomUUID().toString()); newClassification.setClassificationScheme(registryPackageAuthorClassificationScheme); newClassification.setClassifiedObject(submissionSetId); newClassification.setNodeRepresentation(""); if (!registryClassification.getSlot().isEmpty()) { slot = new SlotType1(); slot.setName(registryClassification.getSlot().get(0).getName()); slot.setValueList(registryClassification.getSlot().get(0).getValueList()); newClassification.getSlot().add(slot); } registryPackage.getClassification().add(newClassification); } // ContentTypeCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(registryPackageContentTypeCodesClassificationScheme); classification.setClassifiedObject(submissionSetId); // Code classification.setNodeRepresentation("57016-8"); slot = new SlotType1(); slot.setName("codingScheme"); // Code system valueList = new ValueListType(); valueList.getValue().add("2.16.840.1.113883.6.1"); slot.setValueList(valueList); classification.getSlot().add(slot); // Display name text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue("Privacy Policy Acknowledgement Document"); text.getLocalizedString().add(localizedText); classification.setName(text); registryPackage.getClassification().add(classification); // ExternalIdentifiers - first XDSSubmissionSet.uniqueId... ExternalIdentifierType submissionSetUniqueId = new ExternalIdentifierType(); submissionSetUniqueId.setId(UUID.randomUUID().toString()); submissionSetUniqueId.setRegistryObject(submissionSetId); submissionSetUniqueId.setIdentificationScheme(registryPackageSubmissionSetUniqueIdIdentificationScheme); DateTime oidTimeValue = DateTime.now(DateTimeZone.UTC); submissionSetUniqueId.setValue(submissionSetOid + "." + oidTimeValue.getMillis()); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetUniqueIdName); text.getLocalizedString().add(localizedText); submissionSetUniqueId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetUniqueId); // Now XDSSubmissionSet.sourceId... ExternalIdentifierType submissionSetSourceId = new ExternalIdentifierType(); submissionSetSourceId.setId(UUID.randomUUID().toString()); submissionSetSourceId.setRegistryObject(submissionSetId); submissionSetSourceId.setIdentificationScheme(registryPackageSubmissionSetSourceIdIdentificationScheme); submissionSetSourceId.setValue(iExHubDomainOid); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetSourceIdName); text.getLocalizedString().add(localizedText); submissionSetSourceId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetSourceId); // Now XDSSubmissionSet.patientId... ExternalIdentifierType submissionSetPatientId = new ExternalIdentifierType(); submissionSetPatientId.setId(UUID.randomUUID().toString()); submissionSetPatientId.setRegistryObject(submissionSetId); submissionSetPatientId .setIdentificationScheme(registryPackageSubmissionSetPatientIdIdentificationScheme); submissionSetPatientId.setValue(patientId); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetPatientIdName); text.getLocalizedString().add(localizedText); submissionSetPatientId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetPatientId); registryObjectList.getIdentifiable().add(objectFactory.createRegistryPackage(registryPackage)); // Create SubmissionSet classification for RegistryObjectList... ClassificationType submissionSetClassification = new ClassificationType(); submissionSetClassification.setId(UUID.randomUUID().toString()); submissionSetClassification.setClassifiedObject(submissionSetId); submissionSetClassification.setClassificationNode(registryObjectListSubmissionSetClassificationNode); registryObjectList.getIdentifiable() .add(objectFactory.createClassification(submissionSetClassification)); // Create SubmissionSet Association for RegistryObjectList... AssociationType1 submissionSetAssociation = new AssociationType1(); submissionSetAssociation.setId(/*UUID.randomUUID().toString()*/ "as01"); submissionSetAssociation .setAssociationType("urn:oasis:names:tc:ebxml-regrep:AssociationType:HasMember"); submissionSetAssociation.setSourceObject(submissionSetId); submissionSetAssociation.setTargetObject("urn:uuid:" + newDocumentUuid.toString()); slot = new SlotType1(); slot.setName("SubmissionSetStatus"); valueList = new ValueListType(); valueList.getValue().add("Original"); slot.setValueList(valueList); submissionSetAssociation.getSlot().add(slot); registryObjectList.getIdentifiable().add(objectFactory.createAssociation(submissionSetAssociation)); // If updating a document, then we need to add another association which links the current document in the repository to this one... if (updateDocument) { AssociationType1 rplcAssociation = new AssociationType1(); rplcAssociation.setId("Assoc1"); rplcAssociation.setAssociationType("urn:ihe:iti:2007:AssociationType:RPLC"); rplcAssociation.setTargetObject("urn:uuid:" + previousDocumentUuid.toString()); rplcAssociation.setSourceObject("urn:uuid:" + newDocumentUuid.toString() ///*(contract.getIdentifier().getValue().startsWith("urn:uuid:")) ?*/ contract.getIdentifier().getValue() /*: "urn:uuid:" + contract.getIdentifier().getValue()*/); registryObjectList.getIdentifiable().add(objectFactory.createAssociation(rplcAssociation)); // Replace old contract identifier with new one... contract.getId().setValueAsString(newDocumentUuid.toString()); } else { contract.getId().setValueAsString(newDocumentUuid.toString()); } submitObjectsRequest.setRegistryObjectList(registryObjectList); documentSetRequest.setSubmitObjectsRequest(submitObjectsRequest); // Add document to message... XdsBDocumentRepository.ihe.iti.xds_b._2007.ProvideAndRegisterDocumentSetRequestType.Document documentForMessage = new XdsBDocumentRepository.ihe.iti.xds_b._2007.ProvideAndRegisterDocumentSetRequestType.Document(); documentForMessage.setValue(xmlContent); documentForMessage.setId("urn:uuid:" + newDocumentUuid.toString()); documentSetRequest.getDocument().add(documentForMessage); logIti41AuditMsg(submissionSetId, patientId); if (logXdsBRequestMessages) { OMElement requestElement = repositoryStub.toOM(documentSetRequest, repositoryStub.optimizeContent(new javax.xml.namespace.QName("urn:ihe:iti:xds-b:2007", "ProvideAndRegisterDocumentSetRequest")), new javax.xml.namespace.QName("urn:ihe:iti:xds-b:2007", "ProvideAndRegisterDocumentSetRequest")); Files.write( Paths.get(logOutputPath + newDocumentUuid.toString() + "_ProvideAndRegisterDocumentSetRequest.xml"), requestElement.toString().getBytes()); } return repositoryStub.documentRepository_ProvideAndRegisterDocumentSetB(documentSetRequest); } catch (Exception e) { throw e; } }
From source file:org.integratedmodelling.time.literals.DurationValue.java
License:Open Source License
/** * Localize a duration to an extent starting at the current moment * using the same resolution that was implied in the generating * text. For example, if the duration was one year, localize to the * current year (jan 1st to dec 31st). Return the start and end points * of the extent.// w w w.ja v a 2s .co m * * @return */ public Pair<TimeValue, TimeValue> localize() { DateTime date = new DateTime(); TimeValue start = null, end = null; long val = value; switch (precision) { case TemporalPrecision.MILLISECOND: start = new TimeValue(date); end = new TimeValue(date.plus(val)); break; case TemporalPrecision.SECOND: val = value / DateTimeConstants.MILLIS_PER_SECOND; start = new TimeValue(new DateTime(date.getYear(), date.getMonthOfYear(), date.getDayOfMonth(), date.getHourOfDay(), date.getMinuteOfHour(), date.getSecondOfMinute(), 0)); end = new TimeValue(start.getTimeData().plusSeconds((int) val)); break; case TemporalPrecision.MINUTE: val = value / DateTimeConstants.MILLIS_PER_MINUTE; start = new TimeValue(new DateTime(date.getYear(), date.getMonthOfYear(), date.getDayOfMonth(), date.getHourOfDay(), date.getMinuteOfHour(), 0, 0)); end = new TimeValue(start.getTimeData().plusMinutes((int) val)); break; case TemporalPrecision.HOUR: val = value / DateTimeConstants.MILLIS_PER_HOUR; start = new TimeValue(new DateTime(date.getYear(), date.getMonthOfYear(), date.getDayOfMonth(), date.getHourOfDay(), 0, 0, 0)); end = new TimeValue(start.getTimeData().plusHours((int) val)); break; case TemporalPrecision.DAY: val = value / DateTimeConstants.MILLIS_PER_DAY; start = new TimeValue( new DateTime(date.getYear(), date.getMonthOfYear(), date.getDayOfMonth(), 0, 0, 0, 0)); end = new TimeValue(start.getTimeData().plusDays((int) val)); break; case TemporalPrecision.MONTH: start = new TimeValue(new DateTime(date.getYear(), date.getMonthOfYear(), 1, 0, 0, 0, 0)); end = new TimeValue(start.getTimeData().plusMonths(origQuantity)); break; case TemporalPrecision.YEAR: start = new TimeValue(new DateTime(date.getYear(), 1, 1, 0, 0, 0, 0)); end = new TimeValue(start.getTimeData().plusYears(origQuantity)); break; } return new Pair<TimeValue, TimeValue>(start, end); }
From source file:org.isisaddons.app.kitchensink.fixture.date.DateObjectsFixture.java
License:Apache License
private DateObject create(final String name, final DateTime dt, final ExecutionContext ec) { final DateObject dateObject = dateObjects.createDateObject(name, dt.getYear(), dt.getMonthOfYear(), dt.getDayOfMonth(), dt.getHourOfDay(), dt.getMinuteOfHour()); objects.add(dateObject);//from w w w .java2 s .com return ec.addResult(this, dateObject); }
From source file:org.jasig.portal.portlets.statistics.BaseStatisticsReportController.java
License:Apache License
/** * Build the aggregation {@link DataTable} *//*from w w w . j a va2 s . com*/ protected final DataTable buildAggregationReport(F form) throws TypeMismatchException { //Pull data out of form for per-group fetching final AggregationInterval interval = form.getInterval(); final DateMidnight start = form.getStart(); final DateMidnight end = form.getEnd(); final DateTime startDateTime = start.toDateTime(); //Use a query end of the end date at 23:59:59 final DateTime endDateTime = end.plusDays(1).toDateTime().minusSeconds(1); //Get the list of DateTimes used on the X axis in the report final List<DateTime> reportTimes = this.intervalHelper.getIntervalStartDateTimesBetween(interval, startDateTime, endDateTime, maxIntervals); final Map<D, SortedSet<T>> groupedAggregations = createColumnDiscriminatorMap(form); //Determine the ValueType of the date/time column. Use the most specific column type possible final ValueType dateTimeColumnType; if (interval.isHasTimePart()) { //If start/end are the same day just display the time if (startDateTime.toDateMidnight().equals(endDateTime.toDateMidnight())) { dateTimeColumnType = ValueType.TIMEOFDAY; } //interval has time data and start/end are on different days, show full date time else { dateTimeColumnType = ValueType.DATETIME; } } //interval is date only else { dateTimeColumnType = ValueType.DATE; } //Setup the date/time column description final ColumnDescription dateTimeColumn; switch (dateTimeColumnType) { case TIMEOFDAY: { dateTimeColumn = new ColumnDescription("time", dateTimeColumnType, "Time"); break; } default: { dateTimeColumn = new ColumnDescription("date", dateTimeColumnType, "Date"); } } final DataTable table = new JsonDataTable(); table.addColumn(dateTimeColumn); //Setup columns in the DataTable final Set<D> columnGroups = groupedAggregations.keySet(); for (final D columnMapping : columnGroups) { final Collection<ColumnDescription> columnDescriptions = this.getColumnDescriptions(columnMapping, form); table.addColumns(columnDescriptions); } //Query for all aggregation data in the time range for all groups. Only the //interval and discriminator data is used from the keys. final Set<K> keys = createAggregationsQueryKeyset(columnGroups, form); final BaseAggregationDao<T, K> baseAggregationDao = this.getBaseAggregationDao(); final Collection<T> aggregations = baseAggregationDao.getAggregations(startDateTime, endDateTime, keys, extractGroupsArray(columnGroups)); //Organize the results by group and sort them chronologically by adding them to the sorted set for (final T aggregation : aggregations) { final D discriminator = aggregation.getAggregationDiscriminator(); final SortedSet<T> results = groupedAggregations.get(discriminator); results.add(aggregation); } //Build Map from discriminator column mapping to result iterator to allow putting results into //the correct column AND the correct time slot in the column Comparator<? super D> comparator = getDiscriminatorComparator(); final Map<D, PeekingIterator<T>> groupedAggregationIterators = new TreeMap<D, PeekingIterator<T>>( (comparator)); for (final Entry<D, SortedSet<T>> groupedAggregationEntry : groupedAggregations.entrySet()) { groupedAggregationIterators.put(groupedAggregationEntry.getKey(), Iterators.peekingIterator(groupedAggregationEntry.getValue().iterator())); } /* * populate the data, filling in blank spots. The full list of interval DateTimes is used to create every row in the * query range. Then the iterator */ for (final DateTime rowTime : reportTimes) { // create the row final TableRow row = new TableRow(); // add the date to the first cell final Value dateTimeValue; switch (dateTimeColumnType) { case DATE: { dateTimeValue = new DateValue(rowTime.getYear(), rowTime.getMonthOfYear() - 1, rowTime.getDayOfMonth()); break; } case TIMEOFDAY: { dateTimeValue = new TimeOfDayValue(rowTime.getHourOfDay(), rowTime.getMinuteOfHour(), 0); break; } default: { dateTimeValue = new DateTimeValue(rowTime.getYear(), rowTime.getMonthOfYear() - 1, rowTime.getDayOfMonth(), rowTime.getHourOfDay(), rowTime.getMinuteOfHour(), 0, 0); break; } } row.addCell(new TableCell(dateTimeValue)); for (final PeekingIterator<T> groupedAggregationIteratorEntry : groupedAggregationIterators.values()) { List<Value> values = null; if (groupedAggregationIteratorEntry.hasNext()) { final T aggr = groupedAggregationIteratorEntry.peek(); if (rowTime.equals(aggr.getDateTime())) { //Data is for the correct time slot, advance the iterator groupedAggregationIteratorEntry.next(); values = createRowValues(aggr, form); } } //Gap in the data, fill it in using a null aggregation if (values == null) { values = createRowValues(null, form); } //Add the values to the row for (final Value value : values) { row.addCell(value); } } table.addRow(row); } return table; }
From source file:org.jasig.portlet.blackboardvcportlet.service.SessionForm.java
License:Apache License
public void setStartTime(DateTime startTime) { startDate = startTime.toDateMidnight(); startHour = startTime.getHourOfDay(); startMinute = startTime.getMinuteOfHour(); startHourMinute = new LocalTime(startTime); }
From source file:org.jasig.portlet.blackboardvcportlet.service.SessionForm.java
License:Apache License
public void setEndTime(DateTime endTime) { endDate = endTime.toDateMidnight();/*from w ww .j a va 2 s.c o m*/ endHour = endTime.getHourOfDay(); endMinute = endTime.getMinuteOfHour(); endHourMinute = new LocalTime(endTime); }
From source file:org.jasig.portlet.calendar.adapter.ExchangeCalendarAdapter.java
License:Apache License
/** * Get an XMLGregorianCalendar for the specified date. * * @param date//www . ja v a2s . c o m * @return * @throws DatatypeConfigurationException */ protected XMLGregorianCalendar getXmlDate(DateTime date) throws DatatypeConfigurationException { // construct an XMLGregorianCalendar DatatypeFactory datatypeFactory = DatatypeFactory.newInstance(); XMLGregorianCalendar start = datatypeFactory.newXMLGregorianCalendar(); start.setYear(date.getYear()); start.setMonth(date.getMonthOfYear()); start.setTime(date.getHourOfDay(), date.getMinuteOfHour(), date.getSecondOfMinute(), date.getMillisOfSecond()); start.setDay(date.getDayOfMonth()); return start; }