Java tutorial
/******************************************************************************* * Copyright (c) 2015, 2016 Substance Abuse and Mental Health Services Administration (SAMHSA) * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. * * Contributors: * Eversolve, LLC - initial IExHub implementation for Health Information Exchange (HIE) integration * Anthony Sute, Ioana Singureanu *******************************************************************************/ package org.iexhub.connectors; import XdsBDocumentRepository.ihe.iti.xds_b._2007.ProvideAndRegisterDocumentSetRequestType; import XdsBDocumentRepository.oasis.names.tc.ebxml_regrep.xsd.lcm._3.SubmitObjectsRequest; import XdsBDocumentRepository.oasis.names.tc.ebxml_regrep.xsd.rim._3.*; import XdsBDocumentRepository.oasis.names.tc.ebxml_regrep.xsd.rs._3.RegistryResponseType; import XdsBDocumentRepository.org.iexhub.services.client.DocumentRepository_ServiceStub; import ca.uhn.fhir.model.api.IResource; import ca.uhn.fhir.model.dstu2.composite.ResourceReferenceDt; import ca.uhn.fhir.model.dstu2.resource.Contract; import ca.uhn.fhir.model.dstu2.resource.Patient; import ca.uhn.fhir.model.primitive.StringDt; import org.apache.axiom.om.OMAbstractFactory; import org.apache.axiom.om.OMElement; import org.apache.axiom.soap.SOAPFactory; import org.apache.axis2.AxisFault; import org.apache.axis2.Constants; import org.apache.commons.io.FileUtils; import org.apache.log4j.Logger; import org.hl7.fhir.instance.model.api.IBaseResource; import org.iexhub.exceptions.DocumentTypeUnsupportedException; import org.iexhub.exceptions.UnexpectedServerException; import org.joda.time.DateTime; import org.joda.time.DateTimeZone; import org.joda.time.format.DateTimeFormatter; import org.joda.time.format.ISODateTimeFormat; import org.productivity.java.syslog4j.Syslog; import org.productivity.java.syslog4j.impl.net.tcp.ssl.SSLTCPNetSyslogConfig; import org.w3c.dom.Document; import org.w3c.dom.Element; import org.w3c.dom.NodeList; import org.xml.sax.InputSource; import javax.xml.namespace.NamespaceContext; import javax.xml.parsers.DocumentBuilder; import javax.xml.parsers.DocumentBuilderFactory; import javax.xml.xpath.XPath; import javax.xml.xpath.XPathConstants; import javax.xml.xpath.XPathFactory; import java.io.*; import java.net.InetAddress; import java.nio.file.Files; import java.nio.file.Paths; import java.util.*; /** * XdsBRepositoryManager Connector * ITI-41 Provide and Register Document * @author A. Sute * */ public class XdsBRepositoryManager { /** Logger */ public static final Logger log = Logger.getLogger(XdsBRepositoryManager.class); private static final String propertiesFile = "/temp/IExHub.properties"; private static boolean testMode = false; private static boolean logXdsBRequestMessages = false; private static String logOutputPath = "/temp/"; private static boolean logSyslogAuditMsgsLocally = false; private static String keyStoreFile = "/temp/1264.jks"; private static String keyStorePwd = "IEXhub"; private static String cipherSuites = "TLS_RSA_WITH_AES_128_CBC_SHA"; private static String httpsProtocols = "TLSv1"; private static String iti41AuditMsgTemplate = null; private static SSLTCPNetSyslogConfig sysLogConfig = null; private static final SOAPFactory soapFactory = OMAbstractFactory.getSOAP12Factory(); private static final ObjectFactory objectFactory = new ObjectFactory(); private static DocumentRepository_ServiceStub repositoryStub = null; private static boolean debugSsl = false; private static String repositoryEndpointUri = null; private static String iExHubDomainOid = "1.3.6.1.4.1.21367.13.60.232"; private static String documentAuthorClassificationScheme = "urn:uuid:93606bcf-9494-43ec-9b4e-a7748d1a838d"; private static String documentClassCodesClassificationScheme = "urn:uuid:41a5887f-8865-4c09-adf7-e362475b143a"; private static String documentClassCodesNodeRepresentation = "*"; private static String documentClassCodesNodeRepresentationContract = "*"; private static String documentClassCodesCodingScheme = "1.3.6.1.4.1.21367.100.1"; private static String documentClassCodesName = "2.16.840.1.113883.6.1"; private static String documentConfidentialityCodesClassificationScheme = "urn:uuid:f4f85eac-e6cb-4883-b524-f2705394840f"; private static String documentContentTypeClassificationScheme = "urn:uuid:f0306f51-975f-434e-a61c-c59651d33983"; private static String documentFormatCodesClassificationScheme = "urn:uuid:a09d5840-386c-46f2-b5ad-9c3699a4309d"; private static String documentFormatCodesNodeRepresentation = "urn:ihe:iti:xds-sd:text:2008"; private static String documentFormatCodesCodingScheme = "1.3.6.1.4.1.19376.1.2.3"; private static String documentFormatCodesName = "Health encounter site"; private static String documentHealthcareFacilityTypeCodesClassificationScheme = "urn:uuid:f33fb8ac-18af-42cc-ae0e-ed0b0bdb91e1"; private static String documentHealthcareFacilityTypeCodesNodeRepresentation = "unobtainable"; private static String documentHealthcareFacilityTypeCodesCodingScheme = "Connect-a-thon healthcareFacilityTypeCodes"; private static String documentHealthcareFacilityTypeCodesName = "unobtainable"; private static String documentPracticeSettingCodesDisplayName = "unobtainable"; private static String documentPracticeSettingCodesClassificationScheme = "urn:uuid:cccf5598-8b07-4b77-a05e-ae952c785ead"; private static String documentPracticeSettingCodesNodeRepresentation = "unobtainable"; private static String documentPracticeSettingCodesCodingScheme = "Connect-a-thon practiceSettingCodes"; private static String extrinsicObjectExternalIdentifierPatientIdIdentificationScheme = "urn:uuid:58a6f841-87b3-4a3e-92fd-a8ffeff98427"; private static String extrinsicObjectExternalIdentifierPatientIdName = "XDSDocumentEntry.patientId"; private static String extrinsicObjectExternalIdentifierUniqueIdIdentificationScheme = "urn:uuid:2e82c1f6-a085-4c72-9da3-8640a32e42ab"; private static String extrinsicObjectExternalIdentifierUniqueIdName = "XDSDocumentEntry.uniqueId"; private static String extrinsicObjectExternalIdentifierEntryUuidIdentificationScheme = "urn:uuid:7edca82f-054d-47f2-a032-9b2a5b5186c1"; private static String extrinsicObjectExternalIdentifierEntryUuidName = "XDSDocumentEntry.entryUuid"; private static String submissionSetOid = "1.2.3.4.5"; private static String registryPackageAuthorClassificationScheme = "urn:uuid:a7058bb9-b4e4-4307-ba5b-e3f0ab85e12d"; private static String registryPackageContentTypeCodesClassificationScheme = "urn:uuid:aa543740-bdda-424e-8c96-df4873be8500"; private static String registryPackageSubmissionSetUniqueIdIdentificationScheme = "urn:uuid:96fdda7c-d067-4183-912e-bf5ee74998a8"; private static String registryPackageSubmissionSetSourceIdIdentificationScheme = "urn:uuid:554ac39e-e3fe-47fe-b233-965d2a147832"; private static String registryPackageSubmissionSetPatientIdIdentificationScheme = "urn:uuid:6b5aea1a-874d-4603-a4bc-96a0a7b38446"; private static String registryObjectListSubmissionSetClassificationNode = "urn:uuid:a54d6aa5-d40d-43f9-88c5-b4633d873bdd"; private static String externalIdentifierSubmissionSetUniqueIdName = "XDSSubmissionSet.uniqueId"; private static String externalIdentifierSubmissionSetSourceIdName = "XDSSubmissionSet.sourceId"; private static String externalIdentifierSubmissionSetPatientIdName = "XDSSubmissionSet.patientId"; public XdsBRepositoryManager() { } /** * @param repositoryEndpointURI */ public static void setRepositoryEndpointURI(String repositoryEndpointURI) { if (repositoryStub != null) { repositoryStub._getServiceClient().getOptions() .setTo(new org.apache.axis2.addressing.EndpointReference(repositoryEndpointURI)); XdsBRepositoryManager.repositoryEndpointUri = repositoryEndpointURI; } } /** * @param registryEndpointURI * @param repositoryEndpointURI * @throws AxisFault * @throws Exception */ public XdsBRepositoryManager(String registryEndpointURI, String repositoryEndpointURI) throws AxisFault, Exception { this(registryEndpointURI, repositoryEndpointURI, false); } /** * @param registryEndpointURI * @param repositoryEndpointURI * @param enableTLS * @throws AxisFault * @throws Exception */ public XdsBRepositoryManager(String registryEndpointURI, String repositoryEndpointURI, boolean enableTLS) throws AxisFault, Exception { Properties props = new Properties(); try { props.load(new FileInputStream(propertiesFile)); XdsBRepositoryManager.logSyslogAuditMsgsLocally = (props .getProperty("LogSyslogAuditMsgsLocally") == null) ? XdsBRepositoryManager.logSyslogAuditMsgsLocally : Boolean.parseBoolean(props.getProperty("LogSyslogAuditMsgsLocally")); XdsBRepositoryManager.logOutputPath = (props.getProperty("LogOutputPath") == null) ? XdsBRepositoryManager.logOutputPath : props.getProperty("LogOutputPath"); XdsBRepositoryManager.logXdsBRequestMessages = (props.getProperty("LogXdsBRequestMessages") == null) ? XdsBRepositoryManager.logXdsBRequestMessages : Boolean.parseBoolean(props.getProperty("LogXdsBRequestMessages")); XdsBRepositoryManager.debugSsl = (props.getProperty("DebugSSL") == null) ? XdsBRepositoryManager.debugSsl : Boolean.parseBoolean(props.getProperty("DebugSSL")); XdsBRepositoryManager.testMode = (props.getProperty("TestMode") == null) ? XdsBRepositoryManager.testMode : Boolean.parseBoolean(props.getProperty("TestMode")); XdsBRepositoryManager.iExHubDomainOid = (props.getProperty("IExHubDomainOID") == null) ? XdsBRepositoryManager.iExHubDomainOid : props.getProperty("IExHubDomainOID"); XdsBRepositoryManager.keyStoreFile = (props.getProperty("XdsBKeyStoreFile") == null) ? XdsBRepositoryManager.keyStoreFile : props.getProperty("XdsBKeyStoreFile"); XdsBRepositoryManager.keyStorePwd = (props.getProperty("XdsBKeyStorePwd") == null) ? XdsBRepositoryManager.keyStorePwd : props.getProperty("XdsBKeyStorePwd"); XdsBRepositoryManager.cipherSuites = (props.getProperty("XdsBCipherSuites") == null) ? XdsBRepositoryManager.cipherSuites : props.getProperty("XdsBCipherSuites"); XdsBRepositoryManager.httpsProtocols = (props.getProperty("XdsBHttpsProtocols") == null) ? XdsBRepositoryManager.httpsProtocols : props.getProperty("XdsBHttpsProtocols"); XdsBRepositoryManager.documentAuthorClassificationScheme = (props .getProperty("XdsBDocumentAuthorClassificationScheme") == null) ? XdsBRepositoryManager.documentAuthorClassificationScheme : props.getProperty("XdsBDocumentAuthorClassificationScheme"); // ClassCode XdsBRepositoryManager.documentClassCodesClassificationScheme = (props .getProperty("XdsBDocumentClassCodesClassificationScheme") == null) ? XdsBRepositoryManager.documentClassCodesClassificationScheme : props.getProperty("XdsBDocumentClassCodesClassificationScheme"); XdsBRepositoryManager.documentClassCodesNodeRepresentation = (props .getProperty("XdsBDocumentClassCodesNodeRepresentation") == null) ? XdsBRepositoryManager.documentClassCodesNodeRepresentation : props.getProperty("XdsBDocumentClassCodesNodeRepresentation"); XdsBRepositoryManager.documentClassCodesNodeRepresentationContract = (props .getProperty("XdsBDocumentClassCodesNodeRepresentationContract") == null) ? XdsBRepositoryManager.documentClassCodesNodeRepresentationContract : props.getProperty("XdsBDocumentClassCodesNodeRepresentationContract"); XdsBRepositoryManager.documentClassCodesCodingScheme = (props .getProperty("XdsBDocumentClassCodesCodingScheme") == null) ? XdsBRepositoryManager.documentClassCodesCodingScheme : props.getProperty("XdsBDocumentClassCodesCodingScheme"); XdsBRepositoryManager.documentClassCodesName = (props.getProperty("XdsBDocumentClassCodesName") == null) ? XdsBRepositoryManager.documentClassCodesName : props.getProperty("XdsBDocumentClassCodesName"); XdsBRepositoryManager.documentConfidentialityCodesClassificationScheme = (props .getProperty("XdsBDocumentConfidentialityCodesClassificationScheme") == null) ? XdsBRepositoryManager.documentConfidentialityCodesClassificationScheme : props.getProperty("XdsBDocumentConfidentialityCodesClassificationScheme"); XdsBRepositoryManager.documentContentTypeClassificationScheme = (props .getProperty("XdsBDocumentContentTypeClassificationScheme") == null) ? XdsBRepositoryManager.documentContentTypeClassificationScheme : props.getProperty("XdsBDocumentContentTypeClassificationScheme"); XdsBRepositoryManager.documentFormatCodesClassificationScheme = (props .getProperty("XdsBDocumentFormatCodesClassificationScheme") == null) ? XdsBRepositoryManager.documentFormatCodesClassificationScheme : props.getProperty("XdsBDocumentFormatCodesClassificationScheme"); XdsBRepositoryManager.documentFormatCodesNodeRepresentation = (props .getProperty("XdsBDocumentFormatCodesNodeRepresentation") == null) ? XdsBRepositoryManager.documentFormatCodesNodeRepresentation : props.getProperty("XdsBDocumentFormatCodesNodeRepresentation"); XdsBRepositoryManager.documentFormatCodesCodingScheme = (props .getProperty("XdsBDocumentFormatCodesCodingScheme") == null) ? XdsBRepositoryManager.documentFormatCodesCodingScheme : props.getProperty("XdsBDocumentFormatCodesCodingScheme"); XdsBRepositoryManager.documentFormatCodesName = (props .getProperty("XdsBDocumentFormatCodesName") == null) ? XdsBRepositoryManager.documentFormatCodesName : props.getProperty("XdsBDocumentFormatCodesName"); XdsBRepositoryManager.documentHealthcareFacilityTypeCodesClassificationScheme = (props .getProperty("XdsBDocumentHealthcareFacilityTypeCodesClassificationScheme") == null) ? XdsBRepositoryManager.documentHealthcareFacilityTypeCodesClassificationScheme : props.getProperty("XdsBDocumentHealthcareFacilityTypeCodesClassificationScheme"); XdsBRepositoryManager.documentHealthcareFacilityTypeCodesNodeRepresentation = (props .getProperty("XdsBDocumentHealthcareFacilityTypeCodesNodeRepresentation") == null) ? XdsBRepositoryManager.documentHealthcareFacilityTypeCodesNodeRepresentation : props.getProperty("XdsBDocumentHealthcareFacilityTypeCodesNodeRepresentation"); XdsBRepositoryManager.documentHealthcareFacilityTypeCodesCodingScheme = (props .getProperty("XdsBDocumentHealthcareFacilityTypeCodesCodingScheme") == null) ? XdsBRepositoryManager.documentHealthcareFacilityTypeCodesCodingScheme : props.getProperty("XdsBDocumentHealthcareFacilityTypeCodesCodingScheme"); XdsBRepositoryManager.documentHealthcareFacilityTypeCodesName = (props .getProperty("XdsBDocumentHealthcareFacilityTypeCodesName") == null) ? XdsBRepositoryManager.documentHealthcareFacilityTypeCodesName : props.getProperty("XdsBDocumentHealthcareFacilityTypeCodesName"); XdsBRepositoryManager.documentPracticeSettingCodesClassificationScheme = (props .getProperty("XdsBDocumentPracticeSettingCodesClassificationScheme") == null) ? XdsBRepositoryManager.documentPracticeSettingCodesClassificationScheme : props.getProperty("XdsBDocumentPracticeSettingCodesClassificationScheme"); XdsBRepositoryManager.documentPracticeSettingCodesNodeRepresentation = (props .getProperty("XdsBDocumentPracticeSettingCodesNodeRepresentation") == null) ? XdsBRepositoryManager.documentPracticeSettingCodesNodeRepresentation : props.getProperty("XdsBDocumentPracticeSettingCodesNodeRepresentation"); XdsBRepositoryManager.documentPracticeSettingCodesCodingScheme = (props .getProperty("XdsBDocumentPracticeSettingCodesCodingScheme") == null) ? XdsBRepositoryManager.documentPracticeSettingCodesCodingScheme : props.getProperty("XdsBDocumentPracticeSettingCodesCodingScheme"); XdsBRepositoryManager.documentHealthcareFacilityTypeCodesCodingScheme = (props .getProperty("XdsBDocumentHealthcareFacilityTypeCodesCodingScheme") == null) ? XdsBRepositoryManager.documentHealthcareFacilityTypeCodesCodingScheme : props.getProperty("XdsBDocumentHealthcareFacilityTypeCodesCodingScheme"); XdsBRepositoryManager.documentHealthcareFacilityTypeCodesName = (props .getProperty("XdsBDocumentHealthcareFacilityTypeCodesName") == null) ? XdsBRepositoryManager.documentHealthcareFacilityTypeCodesName : props.getProperty("XdsBDocumentHealthcareFacilityTypeCodesName"); XdsBRepositoryManager.documentPracticeSettingCodesDisplayName = (props .getProperty("XdsBDocumentPracticeSettingCodesDisplayName") == null) ? XdsBRepositoryManager.documentPracticeSettingCodesDisplayName : props.getProperty("XdsBDocumentPracticeSettingCodesDisplayName"); XdsBRepositoryManager.extrinsicObjectExternalIdentifierPatientIdIdentificationScheme = (props .getProperty("XdsBExtrinsicObjectExternalIdentifierPatientIdIdentificationScheme") == null) ? XdsBRepositoryManager.extrinsicObjectExternalIdentifierPatientIdIdentificationScheme : props.getProperty( "XdsBExtrinsicObjectExternalIdentifierPatientIdIdentificationScheme"); XdsBRepositoryManager.extrinsicObjectExternalIdentifierPatientIdName = (props .getProperty("XdsBExtrinsicObjectExternalIdentifierPatientIdName") == null) ? XdsBRepositoryManager.extrinsicObjectExternalIdentifierPatientIdName : props.getProperty("XdsBExtrinsicObjectExternalIdentifierPatientIdName"); XdsBRepositoryManager.extrinsicObjectExternalIdentifierUniqueIdIdentificationScheme = (props .getProperty("XdsBExtrinsicObjectExternalIdentifierUniqueIdIdentificationScheme") == null) ? XdsBRepositoryManager.extrinsicObjectExternalIdentifierUniqueIdIdentificationScheme : props.getProperty( "XdsBExtrinsicObjectExternalIdentifierUniqueIdIdentificationScheme"); XdsBRepositoryManager.extrinsicObjectExternalIdentifierUniqueIdName = (props .getProperty("XdsBExtrinsicObjectExternalIdentifierUniqueIdName") == null) ? XdsBRepositoryManager.extrinsicObjectExternalIdentifierUniqueIdName : props.getProperty("XdsBExtrinsicObjectExternalIdentifierUniqueIdName"); XdsBRepositoryManager.extrinsicObjectExternalIdentifierEntryUuidIdentificationScheme = (props .getProperty("XdsBExtrinsicObjectExternalIdentifierEntryUuidIdentificationScheme") == null) ? XdsBRepositoryManager.extrinsicObjectExternalIdentifierEntryUuidIdentificationScheme : props.getProperty( "XdsBExtrinsicObjectExternalIdentifierEntryUuidIdentificationScheme"); XdsBRepositoryManager.extrinsicObjectExternalIdentifierEntryUuidName = (props .getProperty("XdsBExtrinsicObjectExternalIdentifierEntryUuidName") == null) ? XdsBRepositoryManager.extrinsicObjectExternalIdentifierEntryUuidName : props.getProperty("XdsBExtrinsicObjectExternalIdentifierEntryUuidName"); XdsBRepositoryManager.registryPackageAuthorClassificationScheme = (props .getProperty("XdsBRegistryPackageAuthorClassificationScheme") == null) ? XdsBRepositoryManager.registryPackageAuthorClassificationScheme : props.getProperty("XdsBRegistryPackageAuthorClassificationScheme"); XdsBRepositoryManager.registryPackageContentTypeCodesClassificationScheme = (props .getProperty("XdsBRegistryPackageContentTypeCodesClassificationScheme") == null) ? XdsBRepositoryManager.registryPackageContentTypeCodesClassificationScheme : props.getProperty("XdsBRegistryPackageContentTypeCodesClassificationScheme"); XdsBRepositoryManager.registryPackageSubmissionSetUniqueIdIdentificationScheme = (props .getProperty("XdsBRegistryPackageSubmissionSetUniqueIdIdentificationScheme") == null) ? XdsBRepositoryManager.registryPackageSubmissionSetUniqueIdIdentificationScheme : props.getProperty("XdsBRegistryPackageSubmissionSetUniqueIdIdentificationScheme"); XdsBRepositoryManager.registryPackageSubmissionSetSourceIdIdentificationScheme = (props .getProperty("XdsBRegistryPackageSubmissionSetSourceIdIdentificationScheme") == null) ? XdsBRepositoryManager.registryPackageSubmissionSetSourceIdIdentificationScheme : props.getProperty("XdsBRegistryPackageSubmissionSetSourceIdIdentificationScheme"); XdsBRepositoryManager.registryPackageSubmissionSetPatientIdIdentificationScheme = (props .getProperty("XdsBRegistryPackageSubmissionSetPatientIdIdentificationScheme") == null) ? XdsBRepositoryManager.registryPackageSubmissionSetPatientIdIdentificationScheme : props.getProperty("XdsBRegistryPackageSubmissionSetPatientIdIdentificationScheme"); XdsBRepositoryManager.registryObjectListSubmissionSetClassificationNode = (props .getProperty("XdsBRegistryObjectListSubmissionSetClassificationNode") == null) ? XdsBRepositoryManager.registryObjectListSubmissionSetClassificationNode : props.getProperty("XdsBRegistryObjectListSubmissionSetClassificationNode"); XdsBRepositoryManager.externalIdentifierSubmissionSetUniqueIdName = (props .getProperty("XdsBExternalIdentifierSubmissionSetUniqueIdName") == null) ? XdsBRepositoryManager.externalIdentifierSubmissionSetUniqueIdName : props.getProperty("XdsBExternalIdentifierSubmissionSetUniqueIdName"); XdsBRepositoryManager.externalIdentifierSubmissionSetSourceIdName = (props .getProperty("XdsBExternalIdentifierSubmissionSetSourceIdName") == null) ? XdsBRepositoryManager.externalIdentifierSubmissionSetSourceIdName : props.getProperty("XdsBExternalIdentifierSubmissionSetSourceIdName"); XdsBRepositoryManager.externalIdentifierSubmissionSetPatientIdName = (props .getProperty("XdsBExternalIdentifierSubmissionSetPatientIdName") == null) ? XdsBRepositoryManager.externalIdentifierSubmissionSetPatientIdName : props.getProperty("XdsBExternalIdentifierSubmissionSetPatientIdName"); XdsBRepositoryManager.submissionSetOid = (props.getProperty("XdsBSubmissionSetOid") == null) ? XdsBRepositoryManager.submissionSetOid : props.getProperty("XdsBSubmissionSetOid"); // If endpoint URI's are null, then set to the values in the properties file... if (registryEndpointURI == null) { registryEndpointURI = props.getProperty("XdsBRegistryEndpointURI"); } if (repositoryEndpointURI == null) { repositoryEndpointURI = props.getProperty("XdsBRepositoryEndpointURI"); } XdsBRepositoryManager.repositoryEndpointUri = repositoryEndpointURI; // If Syslog server host is specified, then configure... iti41AuditMsgTemplate = props.getProperty("Iti41AuditMsgTemplate"); String syslogServerHost = props.getProperty("SyslogServerHost"); int syslogServerPort = (props.getProperty("SyslogServerPort") != null) ? Integer.parseInt(props.getProperty("SyslogServerPort")) : -1; if ((syslogServerHost != null) && (syslogServerHost.length() > 0) && (syslogServerPort > -1)) { if (iti41AuditMsgTemplate == null) { log.error("ITI-41 audit message template not specified in properties file, " + propertiesFile); throw new UnexpectedServerException( "ITI-41 audit message template not specified in properties file, " + propertiesFile); } // TCP over SSL (secure) syslog // System.setProperty("javax.net.ssl.keyStore", // keyStoreFile); // System.setProperty("javax.net.ssl.keyStorePassword", // keyStorePwd); // System.setProperty("javax.net.ssl.trustStore", // keyStoreFile); // System.setProperty("javax.net.ssl.trustStorePassword", // keyStorePwd); System.setProperty("https.cipherSuites", cipherSuites); System.setProperty("https.protocols", httpsProtocols); if (debugSsl) { System.setProperty("javax.net.debug", "ssl"); } sysLogConfig = new SSLTCPNetSyslogConfig(); sysLogConfig.setHost(syslogServerHost); sysLogConfig.setPort(syslogServerPort); sysLogConfig.setKeyStore(keyStoreFile); sysLogConfig.setKeyStorePassword(keyStorePwd); sysLogConfig.setTrustStore(keyStoreFile); sysLogConfig.setTrustStorePassword(keyStorePwd); sysLogConfig.setUseStructuredData(true); sysLogConfig.setMaxMessageLength(8192); Syslog.createInstance("sslTcp", sysLogConfig); } } catch (IOException e) { log.error("Error encountered loading properties file, " + propertiesFile + ", " + e.getMessage()); throw new UnexpectedServerException( "Error encountered loading properties file, " + propertiesFile + ", " + e.getMessage()); } try { // Note that XDS.b registry access is not currently implemented in this class. It is implemented in the XdsB class. if (repositoryEndpointURI != null) { // Instantiate DocumentRegistry client stub and enable WS-Addressing and MTOM... repositoryStub = new DocumentRepository_ServiceStub(repositoryEndpointURI); repositoryStub._getServiceClient().engageModule("addressing"); repositoryStub._getServiceClient().getOptions().setProperty(Constants.Configuration.ENABLE_MTOM, Constants.VALUE_TRUE); if (enableTLS) { System.setProperty("javax.net.ssl.keyStore", keyStoreFile); System.setProperty("javax.net.ssl.keyStorePassword", keyStorePwd); System.setProperty("javax.net.ssl.trustStore", keyStoreFile); System.setProperty("javax.net.ssl.trustStorePassword", keyStorePwd); System.setProperty("https.cipherSuites", cipherSuites); System.setProperty("https.protocols", httpsProtocols); if (debugSsl) { System.setProperty("javax.net.debug", "ssl"); } repositoryStub._getServiceClient().engageModule("rampart"); } } log.info("XdsB connector successfully initialized, registryEndpointURI=" + registryEndpointURI + ", repositoryEndpointURI=" + repositoryEndpointURI); } catch (Exception e) { throw e; } } /** * @param submissionSetId * @param patientId * @throws IOException */ private void logIti41AuditMsg(String submissionSetId, String patientId) throws IOException { String logMsg = FileUtils.readFileToString(new File(iti41AuditMsgTemplate)); // Substitutions... patientId = patientId.replace("'", ""); patientId = patientId.replace("&", "&"); DateTime now = new DateTime(DateTimeZone.UTC); DateTimeFormatter fmt = ISODateTimeFormat.dateTime(); logMsg = logMsg.replace("$DateTime$", fmt.print(now)); logMsg = logMsg.replace("$AltUserId$", "IExHub"); logMsg = logMsg.replace("$IexhubIpAddress$", InetAddress.getLocalHost().getHostAddress()); logMsg = logMsg.replace("$IexhubUserId$", "http://" + InetAddress.getLocalHost().getCanonicalHostName()); logMsg = logMsg.replace("$DestinationIpAddress$", XdsBRepositoryManager.repositoryEndpointUri); logMsg = logMsg.replace("$DestinationUserId$", "IExHub"); logMsg = logMsg.replace("$PatientId$", patientId); logMsg = logMsg.replace("$SubmissionSetId$", submissionSetId); if (logSyslogAuditMsgsLocally) { log.info(logMsg); } if ((sysLogConfig == null) || (iti41AuditMsgTemplate == null)) { return; } // Log the syslog message and close connection Syslog.getInstance("sslTcp").info(logMsg); Syslog.getInstance("sslTcp").flush(); } /** * @param cdaDocument * @param mimeType * @return * @throws Exception */ public RegistryResponseType provideAndRegisterDocumentSet(byte[] cdaDocument, String mimeType) throws Exception { // Support only for a single document per submission set... if (mimeType.compareToIgnoreCase("text/xml") != 0) { throw new DocumentTypeUnsupportedException( "Only XML documents currently supported for ProvideAndRegisterDocumentSet"); } try { ProvideAndRegisterDocumentSetRequestType documentSetRequest = new ProvideAndRegisterDocumentSetRequestType(); // Create SubmitObjectsRequest... SubmitObjectsRequest submitObjectsRequest = new SubmitObjectsRequest(); // Create RegistryObjectList... RegistryObjectListType registryObjectList = new RegistryObjectListType(); // Create ExtrinsicObject... DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance(); DocumentBuilder dBuilder = dbFactory.newDocumentBuilder(); InputStream is = new ByteArrayInputStream(cdaDocument); BufferedReader reader = new BufferedReader(new InputStreamReader(is)); Document doc = dBuilder.parse(new InputSource(reader)); String documentId = UUID.randomUUID().toString(); ExtrinsicObjectType extrinsicObject = new ExtrinsicObjectType(); extrinsicObject.setId(documentId); extrinsicObject.setMimeType(mimeType); extrinsicObject.setObjectType("urn:uuid:7edca82f-054d-47f2-a032-9b2a5b5186c1"); // Create creationTime rim:Slot... ValueListType valueList = null; SlotType1 slot = new SlotType1(); slot.setName("creationTime"); XPath xPath = getCustomXPath(); NodeList nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:effectiveTime", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("value")); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create languageCode rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:languageCode", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("languageCode"); valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("code")); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create serviceStartTime rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:documentationOf/hl7:serviceEvent/hl7:effectiveTime/hl7:low", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("serviceStartTime"); valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("value")); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create serviceStopTime rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:documentationOf/hl7:serviceEvent/hl7:effectiveTime/high", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("serviceStopTime"); valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("value")); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create sourcePatientId rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:id", doc.getDocumentElement(), XPathConstants.NODESET); String patientId = null; if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("sourcePatientId"); valueList = new ValueListType(); patientId = ((Element) nodes.item(0)).getAttribute("extension") + "^^^&" + ((Element) nodes.item(0)).getAttribute("root") + "&ISO"; valueList.getValue().add(patientId); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create sourcePatientInfo rim:Slot... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:name/hl7:family", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { slot = new SlotType1(); slot.setName("sourcePatientInfo"); valueList = new ValueListType(); valueList.getValue().add("PID-3|" + patientId); StringBuilder name = new StringBuilder(); name.append("PID-5|" + ((Element) nodes.item(0)).getTextContent() + "^"); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:name/hl7:given", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { name.append(((Element) nodes.item(0)).getTextContent() + "^^"); } else { name.append("^^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:name/hl7:prefix", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { name.append(((Element) nodes.item(0)).getTextContent() + "^"); } else { name.append("^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:name/hl7:suffix", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { name.append(((Element) nodes.item(0)).getTextContent()); } valueList.getValue().add(name.toString()); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:birthTime", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { valueList.getValue().add("PID-7|" + ((Element) nodes.item(0)).getAttribute("value")); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:patient/hl7:administrativeGenderCode", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { valueList.getValue().add("PID-8|" + ((Element) nodes.item(0)).getAttribute("code")); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { StringBuilder address = new StringBuilder(); address.append("PID-11|"); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:streetAddressLine", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent() + "^^"); } else { address.append("^^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:city", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent() + "^"); } else { address.append("^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:state", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent() + "^"); } else { address.append("^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:postalCode", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent() + "^"); } else { address.append("^"); } xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate( "/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:addr/hl7:country", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { address.append(((Element) nodes.item(0)).getTextContent()); } else { address.append("^"); } valueList.getValue().add(address.toString()); } slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); } // Create rim:Name if necessary... // xPath = XPathFactory.newInstance().newXPath(); // nodes = (NodeList)xPath.evaluate("/ClinicalDocument/title", // doc.getDocumentElement(), // XPathConstants.NODESET); // if (nodes.getLength() > 0) // { // InternationalStringType docName = new InternationalStringType(); // LocalizedStringType localizedName = new LocalizedStringType(); // localizedName.setValue(((Element)nodes.item(0)).getNodeValue()); // docName.getLocalizedString().add(localizedName); // extrinsicObject.setName(docName); // } // Create rim:Description if necessary... // xPath = XPathFactory.newInstance().newXPath(); // nodes = (NodeList)xPath.evaluate("/ClinicalDocument/comments", // doc.getDocumentElement(), // XPathConstants.NODESET); // if (nodes.getLength() > 0) // { // InternationalStringType docComments = new InternationalStringType(); // LocalizedStringType localizedComments = new LocalizedStringType(); // localizedComments.setValue(((Element)nodes.item(0)).getTextContent()); // docComments.getLocalizedString().add(localizedComments); // extrinsicObject.setDescription(docComments); // } // Create classifications - start with document author(s)... ArrayList<ClassificationType> documentAuthorClassifications = new ArrayList<ClassificationType>(); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:author", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { for (int i = 0; i < nodes.getLength(); ++i) { ClassificationType documentAuthorClassification = new ClassificationType(); documentAuthorClassification.setId(UUID.randomUUID().toString()); documentAuthorClassification.setClassificationScheme(documentAuthorClassificationScheme); documentAuthorClassification.setClassifiedObject(documentId); documentAuthorClassification.setNodeRepresentation(""); slot = new SlotType1(); slot.setName("authorPerson"); // authorPerson rim:Slot StringBuilder authorName = new StringBuilder(); xPath = getCustomXPath(); NodeList subNodes = (NodeList) xPath.evaluate("hl7:assignedAuthor/hl7:assignedPerson", nodes.item(i).getChildNodes(), XPathConstants.NODESET); if (subNodes.getLength() > 0) { xPath = getCustomXPath(); NodeList assignedPersonSubNodes = (NodeList) xPath.evaluate("hl7:name/hl7:prefix", subNodes.item(0).getChildNodes(), XPathConstants.NODESET); if (assignedPersonSubNodes.getLength() > 0) { authorName.append(((Element) assignedPersonSubNodes.item(0)).getTextContent() + " "); } xPath = getCustomXPath(); assignedPersonSubNodes = (NodeList) xPath.evaluate("hl7:name/hl7:given", subNodes.item(0).getChildNodes(), XPathConstants.NODESET); if (assignedPersonSubNodes.getLength() > 0) { authorName.append(((Element) assignedPersonSubNodes.item(0)).getTextContent() + " "); } xPath = getCustomXPath(); assignedPersonSubNodes = (NodeList) xPath.evaluate("hl7:name/hl7:family", subNodes.item(0).getChildNodes(), XPathConstants.NODESET); if (assignedPersonSubNodes.getLength() > 0) { authorName.append(((Element) assignedPersonSubNodes.item(0)).getTextContent()); } xPath = getCustomXPath(); assignedPersonSubNodes = (NodeList) xPath.evaluate("hl7:name/hl7:suffix", subNodes.item(0).getChildNodes(), XPathConstants.NODESET); if (assignedPersonSubNodes.getLength() > 0) { authorName.append(" " + ((Element) assignedPersonSubNodes.item(0)).getTextContent()); } } else { // If assignedAuthor is not present, then check for representedOrganization/name... subNodes = (NodeList) xPath.evaluate( "hl7:assignedAuthor/hl7:representedOrganization/hl7:name", nodes.item(i).getChildNodes(), XPathConstants.NODESET); xPath = XPathFactory.newInstance().newXPath(); if (subNodes.getLength() > 0) { authorName.append(((Element) subNodes.item(0)).getTextContent()); } } valueList = new ValueListType(); valueList.getValue().add(authorName.toString()); slot.setValueList(valueList); documentAuthorClassification.getSlot().add(slot); documentAuthorClassifications.add(documentAuthorClassification); extrinsicObject.getClassification().add(documentAuthorClassification); } } // ClassCodes classification... ClassificationType classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentClassCodesClassificationScheme); classification.setClassifiedObject(documentId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:code", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { // from properties file classification.setNodeRepresentation(documentClassCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); // dynamically from the document or from properties file valueList.getValue().add(documentClassCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { InternationalStringType text = new InternationalStringType(); LocalizedStringType localizedText = new LocalizedStringType(); // dynamically from the document or from properties file localizedText.setValue(documentClassCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); } extrinsicObject.getClassification().add(classification); } // ConfidentialityCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentConfidentialityCodesClassificationScheme); classification.setClassifiedObject(documentId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:confidentialityCode", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { if (((Element) nodes.item(0)).getAttribute("code") != null) { classification.setNodeRepresentation(((Element) nodes.item(0)).getAttribute("code")); } slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("codeSystem")); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { InternationalStringType text = new InternationalStringType(); LocalizedStringType localizedText = new LocalizedStringType(); localizedText.setValue(((Element) nodes.item(0)).getAttribute("displayName")); text.getLocalizedString().add(localizedText); classification.setName(text); } extrinsicObject.getClassification().add(classification); } // FormatCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentFormatCodesClassificationScheme); classification.setClassifiedObject(documentId); classification.setNodeRepresentation(documentFormatCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentFormatCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); InternationalStringType text = new InternationalStringType(); LocalizedStringType localizedText = new LocalizedStringType(); localizedText.setValue(documentFormatCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // HealthcareFacilityTypeCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentHealthcareFacilityTypeCodesClassificationScheme); classification.setClassifiedObject(documentId); classification.setNodeRepresentation(documentHealthcareFacilityTypeCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentHealthcareFacilityTypeCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentHealthcareFacilityTypeCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // PracticeSettingCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentPracticeSettingCodesClassificationScheme); classification.setClassifiedObject(documentId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:code", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { if (((Element) nodes.item(0)).getAttribute("code") != null) { classification.setNodeRepresentation(documentPracticeSettingCodesNodeRepresentation); } slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); valueList.getValue().add(documentPracticeSettingCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentPracticeSettingCodesDisplayName); text.getLocalizedString().add(localizedText); classification.setName(text); } extrinsicObject.getClassification().add(classification); } // Type code classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentContentTypeClassificationScheme); classification.setClassifiedObject(documentId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:code", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { if (((Element) nodes.item(0)).getAttribute("code") != null) { classification.setNodeRepresentation(((Element) nodes.item(0)).getAttribute("code")); } slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("codeSystem")); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(((Element) nodes.item(0)).getAttribute("displayName")); text.getLocalizedString().add(localizedText); classification.setName(text); } extrinsicObject.getClassification().add(classification); } // Create rim:ExternalIdentifier(s) - first the XDSDocumentEntry.patientId value(s)... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:recordTarget/hl7:patientRole/hl7:id", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { // for (int i = 0; i < nodes.getLength(); ++i) // { // ExternalIdentifierType externalIdentifierPatientId = new ExternalIdentifierType(); // externalIdentifierPatientId.setId(UUID.randomUUID().toString()); // externalIdentifierPatientId.setRegistryObject(documentId); // externalIdentifierPatientId.setIdentificationScheme(ExtrinsicObjectExternalIdentifierPatientIdIdentificationScheme); // externalIdentifierPatientId.setValue(((Element)nodes.item(i)).getAttribute("extension") // + "^^^&" // + ((Element)nodes.item(i)).getAttribute("root") // + "&ISO"); // text = new InternationalStringType(); // localizedText = new LocalizedStringType(); // localizedText.setValue(ExtrinsicObjectExternalIdentifierPatientIdName); // text.getLocalizedString().add(localizedText); // externalIdentifierPatientId.setName(text); // extrinsicObject.getExternalIdentifier().add(externalIdentifierPatientId); // } ExternalIdentifierType externalIdentifierPatientId = new ExternalIdentifierType(); externalIdentifierPatientId.setId(UUID.randomUUID().toString()); externalIdentifierPatientId.setRegistryObject(documentId); externalIdentifierPatientId .setIdentificationScheme(extrinsicObjectExternalIdentifierPatientIdIdentificationScheme); externalIdentifierPatientId.setValue(((Element) nodes.item(0)).getAttribute("extension") + "^^^&" + ((Element) nodes.item(0)).getAttribute("root") + "&ISO"); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(extrinsicObjectExternalIdentifierPatientIdName); text.getLocalizedString().add(localizedText); externalIdentifierPatientId.setName(text); extrinsicObject.getExternalIdentifier().add(externalIdentifierPatientId); } // Now the XDSDocumentEntry.uniqueId value(s)... xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:id", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { // for (int i = 0; i < nodes.getLength(); ++i) // { // ExternalIdentifierType externalIdentifierPatientId = new ExternalIdentifierType(); // externalIdentifierPatientId.setId(UUID.randomUUID().toString()); // externalIdentifierPatientId.setRegistryObject(documentId); // externalIdentifierPatientId.setIdentificationScheme(ExtrinsicObjectExternalIdentifierUniqueIdIdentificationScheme); // externalIdentifierPatientId.setValue(((Element)nodes.item(i)).getAttribute("root")); // text = new InternationalStringType(); // localizedText = new LocalizedStringType(); // localizedText.setValue(ExtrinsicObjectExternalIdentifierUniqueIdName); // text.getLocalizedString().add(localizedText); // externalIdentifierPatientId.setName(text); // extrinsicObject.getExternalIdentifier().add(externalIdentifierPatientId); // } ExternalIdentifierType externalIdentifierDocumentId = new ExternalIdentifierType(); externalIdentifierDocumentId.setId(UUID.randomUUID().toString()); externalIdentifierDocumentId.setRegistryObject(documentId); externalIdentifierDocumentId .setIdentificationScheme(extrinsicObjectExternalIdentifierUniqueIdIdentificationScheme); if (testMode) { DateTime testDocId = DateTime.now(DateTimeZone.UTC); externalIdentifierDocumentId .setValue(((Element) nodes.item(0)).getAttribute("root") + "^" + testDocId.getMillis()); } else { externalIdentifierDocumentId.setValue(((Element) nodes.item(0)).getAttribute("root") + "^" + ((Element) nodes.item(0)).getAttribute("extension")); } text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(extrinsicObjectExternalIdentifierUniqueIdName); text.getLocalizedString().add(localizedText); externalIdentifierDocumentId.setName(text); extrinsicObject.getExternalIdentifier().add(externalIdentifierDocumentId); } registryObjectList.getIdentifiable().add(objectFactory.createExtrinsicObject(extrinsicObject)); // Create rim:RegistryPackage... String submissionSetId = UUID.randomUUID().toString(); RegistryPackageType registryPackage = new RegistryPackageType(); registryPackage.setId(submissionSetId); // Create rim:RegistryPackage/submissionTime attribute... slot = new SlotType1(); slot.setName("submissionTime"); valueList = new ValueListType(); DateTime now = new DateTime(DateTimeZone.UTC); StringBuilder timeBuilder = new StringBuilder(); timeBuilder.append(now.getYear()); timeBuilder.append((now.getMonthOfYear() < 10) ? ("0" + now.getMonthOfYear()) : now.getMonthOfYear()); timeBuilder.append((now.getDayOfMonth() < 10) ? ("0" + now.getDayOfMonth()) : now.getDayOfMonth()); timeBuilder.append((now.getHourOfDay() < 10) ? ("0" + now.getHourOfDay()) : now.getHourOfDay()); timeBuilder .append((now.getMinuteOfHour() < 10) ? ("0" + now.getMinuteOfHour()) : now.getMinuteOfHour()); valueList.getValue().add(timeBuilder.toString()); slot.setValueList(valueList); registryPackage.getSlot().add(slot); // Recreate authorName classification(s) in rim:RegistryPackage... for (ClassificationType registryClassification : documentAuthorClassifications) { ClassificationType newClassification = new ClassificationType(); newClassification.setId(UUID.randomUUID().toString()); newClassification.setClassificationScheme(registryPackageAuthorClassificationScheme); newClassification.setClassifiedObject(submissionSetId); newClassification.setNodeRepresentation(""); if (!registryClassification.getSlot().isEmpty()) { slot = new SlotType1(); slot.setName(registryClassification.getSlot().get(0).getName()); slot.setValueList(registryClassification.getSlot().get(0).getValueList()); newClassification.getSlot().add(slot); } registryPackage.getClassification().add(newClassification); } // ContentTypeCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(registryPackageContentTypeCodesClassificationScheme); classification.setClassifiedObject(submissionSetId); xPath = getCustomXPath(); nodes = (NodeList) xPath.evaluate("/hl7:ClinicalDocument/hl7:code", doc.getDocumentElement(), XPathConstants.NODESET); if (nodes.getLength() > 0) { if (((Element) nodes.item(0)).getAttribute("code") != null) { classification.setNodeRepresentation(((Element) nodes.item(0)).getAttribute("code")); } slot = new SlotType1(); slot.setName("codingScheme"); if (((Element) nodes.item(0)).getAttribute("codeSystem") != null) { valueList = new ValueListType(); valueList.getValue().add(((Element) nodes.item(0)).getAttribute("codeSystem")); slot.setValueList(valueList); classification.getSlot().add(slot); } if (((Element) nodes.item(0)).getAttribute("displayName") != null) { text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(((Element) nodes.item(0)).getAttribute("displayName")); text.getLocalizedString().add(localizedText); classification.setName(text); } registryPackage.getClassification().add(classification); } // ExternalIdentifiers - first XDSSubmissionSet.uniqueId... ExternalIdentifierType submissionSetUniqueId = new ExternalIdentifierType(); submissionSetUniqueId.setId(UUID.randomUUID().toString()); submissionSetUniqueId.setRegistryObject(submissionSetId); submissionSetUniqueId.setIdentificationScheme(registryPackageSubmissionSetUniqueIdIdentificationScheme); DateTime oidTimeValue = DateTime.now(DateTimeZone.UTC); submissionSetUniqueId.setValue(submissionSetOid + "." + oidTimeValue.getMillis()); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetUniqueIdName); text.getLocalizedString().add(localizedText); submissionSetUniqueId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetUniqueId); // Now XDSSubmissionSet.sourceId... ExternalIdentifierType submissionSetSourceId = new ExternalIdentifierType(); submissionSetSourceId.setId(UUID.randomUUID().toString()); submissionSetSourceId.setRegistryObject(submissionSetId); submissionSetSourceId.setIdentificationScheme(registryPackageSubmissionSetSourceIdIdentificationScheme); submissionSetSourceId.setValue(iExHubDomainOid); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetSourceIdName); text.getLocalizedString().add(localizedText); submissionSetSourceId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetSourceId); // Now XDSSubmissionSet.patientId... ExternalIdentifierType submissionSetPatientId = new ExternalIdentifierType(); submissionSetPatientId.setId(UUID.randomUUID().toString()); submissionSetPatientId.setRegistryObject(submissionSetId); submissionSetPatientId .setIdentificationScheme(registryPackageSubmissionSetPatientIdIdentificationScheme); submissionSetPatientId.setValue(patientId); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetPatientIdName); text.getLocalizedString().add(localizedText); submissionSetPatientId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetPatientId); registryObjectList.getIdentifiable().add(objectFactory.createRegistryPackage(registryPackage)); // Create SubmissionSet classification for RegistryObjectList... ClassificationType submissionSetClassification = new ClassificationType(); submissionSetClassification.setId(UUID.randomUUID().toString()); submissionSetClassification.setClassifiedObject(submissionSetId); submissionSetClassification.setClassificationNode(registryObjectListSubmissionSetClassificationNode); registryObjectList.getIdentifiable() .add(objectFactory.createClassification(submissionSetClassification)); // Create SubmissionSet Association for RegistryObjectList... AssociationType1 submissionSetAssociation = new AssociationType1(); submissionSetAssociation.setId(/*UUID.randomUUID().toString()*/ "as01"); submissionSetAssociation .setAssociationType("urn:oasis:names:tc:ebxml-regrep:AssociationType:HasMember"); submissionSetAssociation.setSourceObject(submissionSetId); submissionSetAssociation.setTargetObject(documentId); slot = new SlotType1(); slot.setName("SubmissionSetStatus"); valueList = new ValueListType(); valueList.getValue().add("Original"); slot.setValueList(valueList); submissionSetAssociation.getSlot().add(slot); registryObjectList.getIdentifiable().add(objectFactory.createAssociation(submissionSetAssociation)); submitObjectsRequest.setRegistryObjectList(registryObjectList); documentSetRequest.setSubmitObjectsRequest(submitObjectsRequest); // Add document to message... XdsBDocumentRepository.ihe.iti.xds_b._2007.ProvideAndRegisterDocumentSetRequestType.Document documentForMessage = new XdsBDocumentRepository.ihe.iti.xds_b._2007.ProvideAndRegisterDocumentSetRequestType.Document(); documentForMessage.setValue(cdaDocument); documentForMessage.setId(documentId); documentSetRequest.getDocument().add(documentForMessage); logIti41AuditMsg(submissionSetId, patientId); if (logXdsBRequestMessages) { OMElement requestElement = repositoryStub.toOM(documentSetRequest, repositoryStub.optimizeContent(new javax.xml.namespace.QName("urn:ihe:iti:xds-b:2007", "ProvideAndRegisterDocumentSetRequest")), new javax.xml.namespace.QName("urn:ihe:iti:xds-b:2007", "ProvideAndRegisterDocumentSetRequest")); Files.write(Paths.get(logOutputPath + documentId + "_ProvideAndRegisterDocumentSetRequest.xml"), requestElement.toString().getBytes()); } return repositoryStub.documentRepository_ProvideAndRegisterDocumentSetB(documentSetRequest); } catch (Exception e) { throw e; } } /** * @param contract * @param xmlContent * @param mimeType * @return * @throws Exception */ public RegistryResponseType provideAndRegisterDocumentSet(Contract contract, byte[] xmlContent, String mimeType) throws Exception { return provideAndRegisterDocumentSet(contract, xmlContent, mimeType, false); } /** * @param contract * @param xmlContent * @param mimeType * @param updateDocument * @return * @throws Exception */ public RegistryResponseType provideAndRegisterDocumentSet(Contract contract, byte[] xmlContent, String mimeType, boolean updateDocument) throws Exception { try { UUID previousDocumentUuid = (updateDocument) ? UUID.fromString(contract.getId().getIdPart()) : null; UUID newDocumentUuid = UUID.randomUUID(); // long hi = entryUuid.getMostSignificantBits(); // long lo = entryUuid.getLeastSignificantBits(); // byte[] bytes = ByteBuffer.allocate(16).putLong(hi).putLong(lo).array(); // BigInteger big = new BigInteger(bytes); String documentIdToUse = /*"urn:oid:" +*/ contract.getIdentifier().getValue(); //"2.25." // + big.toString().replace('-', // '0'); ProvideAndRegisterDocumentSetRequestType documentSetRequest = new ProvideAndRegisterDocumentSetRequestType(); // Create SubmitObjectsRequest... SubmitObjectsRequest submitObjectsRequest = new SubmitObjectsRequest(); // Create RegistryObjectList... RegistryObjectListType registryObjectList = new RegistryObjectListType(); // Create ExtrinsicObject... ExtrinsicObjectType extrinsicObject = new ExtrinsicObjectType(); extrinsicObject.setId("urn:uuid:" + newDocumentUuid.toString()); extrinsicObject.setMimeType(mimeType); extrinsicObject.setObjectType("urn:uuid:7edca82f-054d-47f2-a032-9b2a5b5186c1"); // Create creationTime rim:Slot... ValueListType valueList = null; SlotType1 slot = new SlotType1(); slot.setName("creationTime"); valueList = new ValueListType(); Calendar dateVal = Calendar.getInstance(); dateVal.setTime(contract.getIssued()); valueList.getValue() .add(new StringBuilder().append(dateVal.get(Calendar.YEAR)) .append(String.format("%02d", (dateVal.get(Calendar.MONTH) + 1))) .append(String.format("%02d", dateVal.get(Calendar.DAY_OF_MONTH))) .append(String.format("%02d", dateVal.get(Calendar.HOUR))) .append(String.format("%02d", dateVal.get(Calendar.MINUTE))) .append(String.format("%02d", dateVal.get(Calendar.SECOND))).toString()); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create languageCode rim:Slot... slot = new SlotType1(); slot.setName("languageCode"); valueList = new ValueListType(); valueList.getValue().add("en-US"); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create serviceStartTime rim:Slot... slot = new SlotType1(); slot.setName("serviceStartTime"); valueList = new ValueListType(); dateVal.setTime(contract.getTermFirstRep().getApplies().getStart()); valueList.getValue() .add(new StringBuilder().append(dateVal.get(Calendar.YEAR)) .append(String.format("%02d", (dateVal.get(Calendar.MONTH) + 1))) .append(String.format("%02d", dateVal.get(Calendar.DAY_OF_MONTH))) .append(String.format("%02d", dateVal.get(Calendar.HOUR))) .append(String.format("%02d", dateVal.get(Calendar.MINUTE))) .append(String.format("%02d", dateVal.get(Calendar.SECOND))).toString()); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create serviceStopTime rim:Slot... slot = new SlotType1(); slot.setName("serviceStopTime"); valueList = new ValueListType(); dateVal.setTime(contract.getTermFirstRep().getApplies().getEnd()); valueList.getValue() .add(new StringBuilder().append(dateVal.get(Calendar.YEAR)) .append(String.format("%02d", (dateVal.get(Calendar.MONTH) + 1))) .append(String.format("%02d", dateVal.get(Calendar.DAY_OF_MONTH))) .append(String.format("%02d", dateVal.get(Calendar.HOUR))) .append(String.format("%02d", dateVal.get(Calendar.MINUTE))) .append(String.format("%02d", dateVal.get(Calendar.SECOND))).toString()); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create sourcePatientId rim:Slot... ResourceReferenceDt consentSubjectRef = contract.getSubject().get(0); IBaseResource referencedSubject = consentSubjectRef.getResource(); String referencedId = referencedSubject.getIdElement().getIdPart(); Patient patient = (getContainedResource(Patient.class, contract.getContained().getContainedResources(), referencedId) == null) ? null : (Patient) getContainedResource(Patient.class, contract.getContained().getContainedResources(), referencedId); slot = new SlotType1(); slot.setName("sourcePatientId"); valueList = new ValueListType(); String patientId = null; patientId = referencedId + "^^^&" + iExHubDomainOid + "&ISO"; valueList.getValue().add(patientId); slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create sourcePatientInfo rim:Slot... if ((patient.getName() != null) && (!patient.getName().isEmpty())) { slot = new SlotType1(); slot.setName("sourcePatientInfo"); valueList = new ValueListType(); valueList.getValue().add("PID-3|" + referencedId + "^^^&" + iExHubDomainOid + "&ISO"); StringBuilder name = new StringBuilder(); name.append("PID-5|" + ((patient.getName().get(0).getFamilyAsSingleString() != null) ? patient.getName().get(0).getFamilyAsSingleString() : "") + "^"); name.append(((patient.getName().get(0).getGivenAsSingleString() != null) ? patient.getName().get(0).getGivenAsSingleString() : "") + "^^"); name.append(((patient.getName().get(0).getPrefixAsSingleString() != null) ? patient.getName().get(0).getPrefixAsSingleString() : "") + "^"); name.append(((patient.getName().get(0).getSuffixAsSingleString() != null) ? patient.getName().get(0).getSuffixAsSingleString() : "")); valueList.getValue().add(name.toString()); } // Birthdate dateVal.setTime(patient.getBirthDate()); valueList.getValue() .add(new StringBuilder().append("PID-7|").append(dateVal.get(Calendar.YEAR)) .append(String.format("%02d", (dateVal.get(Calendar.MONTH) + 1))) .append(String.format("%02d", dateVal.get(Calendar.DAY_OF_MONTH))).toString()); // Administrative gender code valueList.getValue() .add("PID-8|" + ((patient.getGender().compareToIgnoreCase("female") == 0) || (patient.getGender().compareToIgnoreCase("f") == 0) ? "F" : (((patient.getGender().compareToIgnoreCase("male") == 0) || (patient.getGender().compareToIgnoreCase("m") == 0) ? "M" : "U")))); // Address info if ((patient.getAddress() != null) && (!patient.getAddress().isEmpty())) { StringBuilder address = new StringBuilder(); address.append("PID-11|"); // Street address line StringBuilder addressLine = new StringBuilder(); for (StringDt lineItem : patient.getAddress().get(0).getLine()) { addressLine.append(lineItem.getValue()); } address.append(addressLine + "^^"); // City address.append( ((patient.getAddress().get(0).getCity() != null) ? patient.getAddress().get(0).getCity() : "") + "^"); // State address.append( ((patient.getAddress().get(0).getState() != null) ? patient.getAddress().get(0).getState() : "") + "^"); // Postal code address.append(((patient.getAddress().get(0).getPostalCode() != null) ? patient.getAddress().get(0).getPostalCode() : "") + "^"); // Country address.append(((patient.getAddress().get(0).getCountry() != null) ? patient.getAddress().get(0).getCountry() : "")); valueList.getValue().add(address.toString()); } slot.setValueList(valueList); extrinsicObject.getSlot().add(slot); // Create classifications - start with document author(s) represented in the Contract as the patient... ArrayList<ClassificationType> documentAuthorClassifications = new ArrayList<ClassificationType>(); StringBuilder authorName = new StringBuilder(); ClassificationType documentAuthorClassification = new ClassificationType(); documentAuthorClassification.setId(UUID.randomUUID().toString()); documentAuthorClassification.setClassificationScheme(documentAuthorClassificationScheme); documentAuthorClassification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); documentAuthorClassification.setNodeRepresentation(""); slot = new SlotType1(); slot.setName("authorPerson"); // authorPerson rim:Slot // Prefix authorName.append(((patient.getName().get(0).getPrefixAsSingleString() != null) ? (patient.getName().get(0).getPrefixAsSingleString() + " ") : "")); // Given name authorName.append(((patient.getName().get(0).getGivenAsSingleString() != null) ? (patient.getName().get(0).getGivenAsSingleString() + " ") : "")); // Family name authorName.append(((patient.getName().get(0).getFamilyAsSingleString() != null) ? (patient.getName().get(0).getFamilyAsSingleString()) : "")); // Suffix authorName.append(((patient.getName().get(0).getSuffixAsSingleString() != null) ? (" " + patient.getName().get(0).getSuffixAsSingleString()) : "")); valueList = new ValueListType(); valueList.getValue().add(authorName.toString()); slot.setValueList(valueList); documentAuthorClassification.getSlot().add(slot); documentAuthorClassifications.add(documentAuthorClassification); extrinsicObject.getClassification().add(documentAuthorClassification); // ClassCodes classification... ClassificationType classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentClassCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); classification.setNodeRepresentation(documentClassCodesNodeRepresentationContract); slot = new SlotType1(); slot.setName("codingScheme"); // Code system valueList = new ValueListType(); valueList.getValue().add("1.3.6.1.4.1.21367.100.1"); slot.setValueList(valueList); classification.getSlot().add(slot); // Display name InternationalStringType text = new InternationalStringType(); LocalizedStringType localizedText = new LocalizedStringType(); localizedText.setValue("Privacy Policy Acknowledgement Document"); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // ConfidentialityCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentConfidentialityCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); // Code classification.setNodeRepresentation("N"); slot = new SlotType1(); slot.setName("codingScheme"); // Code system valueList = new ValueListType(); valueList.getValue().add("2.16.840.1.113883.5.25"); slot.setValueList(valueList); classification.getSlot().add(slot); // Display name text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue("Confidentiality Code"); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // FormatCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentFormatCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); classification.setNodeRepresentation(documentFormatCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentFormatCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentFormatCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // HealthcareFacilityTypeCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentHealthcareFacilityTypeCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); classification.setNodeRepresentation(documentHealthcareFacilityTypeCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentHealthcareFacilityTypeCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentHealthcareFacilityTypeCodesName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // PracticeSettingCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentPracticeSettingCodesClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); classification.setNodeRepresentation(documentPracticeSettingCodesNodeRepresentation); slot = new SlotType1(); slot.setName("codingScheme"); valueList = new ValueListType(); valueList.getValue().add(documentPracticeSettingCodesCodingScheme); slot.setValueList(valueList); classification.getSlot().add(slot); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(documentPracticeSettingCodesDisplayName); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // Type code classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(documentContentTypeClassificationScheme); classification.setClassifiedObject("urn:uuid:" + newDocumentUuid.toString()); // Code classification.setNodeRepresentation("57016-8"); slot = new SlotType1(); slot.setName("codingScheme"); // Code system valueList = new ValueListType(); valueList.getValue().add("2.16.840.1.113883.6.1"); slot.setValueList(valueList); classification.getSlot().add(slot); // Display name text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue("Privacy Policy Acknowledgement Document"); text.getLocalizedString().add(localizedText); classification.setName(text); extrinsicObject.getClassification().add(classification); // Create rim:ExternalIdentifier(s) - first the XDSDocumentEntry.patientId value(s)... ExternalIdentifierType externalIdentifierPatientId = new ExternalIdentifierType(); externalIdentifierPatientId.setId(UUID.randomUUID().toString()); externalIdentifierPatientId.setRegistryObject("urn:uuid:" + newDocumentUuid.toString()); externalIdentifierPatientId .setIdentificationScheme(extrinsicObjectExternalIdentifierPatientIdIdentificationScheme); externalIdentifierPatientId.setValue(referencedId + "^^^&" + iExHubDomainOid + "&ISO"); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(extrinsicObjectExternalIdentifierPatientIdName); text.getLocalizedString().add(localizedText); externalIdentifierPatientId.setName(text); extrinsicObject.getExternalIdentifier().add(externalIdentifierPatientId); // Now the XDSDocumentEntry.uniqueId value(s)... ExternalIdentifierType externalIdentifierUniqueId = new ExternalIdentifierType(); externalIdentifierUniqueId.setId(UUID.randomUUID().toString()); externalIdentifierUniqueId.setRegistryObject("urn:uuid:" + newDocumentUuid.toString()); externalIdentifierUniqueId .setIdentificationScheme(extrinsicObjectExternalIdentifierUniqueIdIdentificationScheme); // if (testMode) // { // DateTime testDocId = DateTime.now(DateTimeZone.UTC); // externalIdentifierDocumentId.setValue(contract.getIdentifier().getSystem() // + "^" // + testDocId.getMillis()); // } // else // { externalIdentifierUniqueId.setValue(//contract.getIdentifier().getSystem() // + "^" /*+*/ documentIdToUse); // } text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(extrinsicObjectExternalIdentifierUniqueIdName); text.getLocalizedString().add(localizedText); externalIdentifierUniqueId.setName(text); extrinsicObject.getExternalIdentifier().add(externalIdentifierUniqueId); registryObjectList.getIdentifiable().add(objectFactory.createExtrinsicObject(extrinsicObject)); // Create rim:RegistryPackage... String submissionSetId = UUID.randomUUID().toString(); RegistryPackageType registryPackage = new RegistryPackageType(); registryPackage.setId(submissionSetId); // Create rim:RegistryPackage/submissionTime attribute... slot = new SlotType1(); slot.setName("submissionTime"); valueList = new ValueListType(); DateTime now = new DateTime(DateTimeZone.UTC); StringBuilder timeBuilder = new StringBuilder(); timeBuilder.append(now.getYear()); timeBuilder.append((now.getMonthOfYear() < 10) ? ("0" + now.getMonthOfYear()) : now.getMonthOfYear()); timeBuilder.append((now.getDayOfMonth() < 10) ? ("0" + now.getDayOfMonth()) : now.getDayOfMonth()); timeBuilder.append((now.getHourOfDay() < 10) ? ("0" + now.getHourOfDay()) : now.getHourOfDay()); timeBuilder .append((now.getMinuteOfHour() < 10) ? ("0" + now.getMinuteOfHour()) : now.getMinuteOfHour()); valueList.getValue().add(timeBuilder.toString()); slot.setValueList(valueList); registryPackage.getSlot().add(slot); // Recreate authorName classification(s) in rim:RegistryPackage... for (ClassificationType registryClassification : documentAuthorClassifications) { ClassificationType newClassification = new ClassificationType(); newClassification.setId(UUID.randomUUID().toString()); newClassification.setClassificationScheme(registryPackageAuthorClassificationScheme); newClassification.setClassifiedObject(submissionSetId); newClassification.setNodeRepresentation(""); if (!registryClassification.getSlot().isEmpty()) { slot = new SlotType1(); slot.setName(registryClassification.getSlot().get(0).getName()); slot.setValueList(registryClassification.getSlot().get(0).getValueList()); newClassification.getSlot().add(slot); } registryPackage.getClassification().add(newClassification); } // ContentTypeCodes classification... classification = new ClassificationType(); classification.setId(UUID.randomUUID().toString()); classification.setClassificationScheme(registryPackageContentTypeCodesClassificationScheme); classification.setClassifiedObject(submissionSetId); // Code classification.setNodeRepresentation("57016-8"); slot = new SlotType1(); slot.setName("codingScheme"); // Code system valueList = new ValueListType(); valueList.getValue().add("2.16.840.1.113883.6.1"); slot.setValueList(valueList); classification.getSlot().add(slot); // Display name text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue("Privacy Policy Acknowledgement Document"); text.getLocalizedString().add(localizedText); classification.setName(text); registryPackage.getClassification().add(classification); // ExternalIdentifiers - first XDSSubmissionSet.uniqueId... ExternalIdentifierType submissionSetUniqueId = new ExternalIdentifierType(); submissionSetUniqueId.setId(UUID.randomUUID().toString()); submissionSetUniqueId.setRegistryObject(submissionSetId); submissionSetUniqueId.setIdentificationScheme(registryPackageSubmissionSetUniqueIdIdentificationScheme); DateTime oidTimeValue = DateTime.now(DateTimeZone.UTC); submissionSetUniqueId.setValue(submissionSetOid + "." + oidTimeValue.getMillis()); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetUniqueIdName); text.getLocalizedString().add(localizedText); submissionSetUniqueId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetUniqueId); // Now XDSSubmissionSet.sourceId... ExternalIdentifierType submissionSetSourceId = new ExternalIdentifierType(); submissionSetSourceId.setId(UUID.randomUUID().toString()); submissionSetSourceId.setRegistryObject(submissionSetId); submissionSetSourceId.setIdentificationScheme(registryPackageSubmissionSetSourceIdIdentificationScheme); submissionSetSourceId.setValue(iExHubDomainOid); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetSourceIdName); text.getLocalizedString().add(localizedText); submissionSetSourceId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetSourceId); // Now XDSSubmissionSet.patientId... ExternalIdentifierType submissionSetPatientId = new ExternalIdentifierType(); submissionSetPatientId.setId(UUID.randomUUID().toString()); submissionSetPatientId.setRegistryObject(submissionSetId); submissionSetPatientId .setIdentificationScheme(registryPackageSubmissionSetPatientIdIdentificationScheme); submissionSetPatientId.setValue(patientId); text = new InternationalStringType(); localizedText = new LocalizedStringType(); localizedText.setValue(externalIdentifierSubmissionSetPatientIdName); text.getLocalizedString().add(localizedText); submissionSetPatientId.setName(text); registryPackage.getExternalIdentifier().add(submissionSetPatientId); registryObjectList.getIdentifiable().add(objectFactory.createRegistryPackage(registryPackage)); // Create SubmissionSet classification for RegistryObjectList... ClassificationType submissionSetClassification = new ClassificationType(); submissionSetClassification.setId(UUID.randomUUID().toString()); submissionSetClassification.setClassifiedObject(submissionSetId); submissionSetClassification.setClassificationNode(registryObjectListSubmissionSetClassificationNode); registryObjectList.getIdentifiable() .add(objectFactory.createClassification(submissionSetClassification)); // Create SubmissionSet Association for RegistryObjectList... AssociationType1 submissionSetAssociation = new AssociationType1(); submissionSetAssociation.setId(/*UUID.randomUUID().toString()*/ "as01"); submissionSetAssociation .setAssociationType("urn:oasis:names:tc:ebxml-regrep:AssociationType:HasMember"); submissionSetAssociation.setSourceObject(submissionSetId); submissionSetAssociation.setTargetObject("urn:uuid:" + newDocumentUuid.toString()); slot = new SlotType1(); slot.setName("SubmissionSetStatus"); valueList = new ValueListType(); valueList.getValue().add("Original"); slot.setValueList(valueList); submissionSetAssociation.getSlot().add(slot); registryObjectList.getIdentifiable().add(objectFactory.createAssociation(submissionSetAssociation)); // If updating a document, then we need to add another association which links the current document in the repository to this one... if (updateDocument) { AssociationType1 rplcAssociation = new AssociationType1(); rplcAssociation.setId("Assoc1"); rplcAssociation.setAssociationType("urn:ihe:iti:2007:AssociationType:RPLC"); rplcAssociation.setTargetObject("urn:uuid:" + previousDocumentUuid.toString()); rplcAssociation.setSourceObject("urn:uuid:" + newDocumentUuid.toString() ///*(contract.getIdentifier().getValue().startsWith("urn:uuid:")) ?*/ contract.getIdentifier().getValue() /*: "urn:uuid:" + contract.getIdentifier().getValue()*/); registryObjectList.getIdentifiable().add(objectFactory.createAssociation(rplcAssociation)); // Replace old contract identifier with new one... contract.getId().setValueAsString(newDocumentUuid.toString()); } else { contract.getId().setValueAsString(newDocumentUuid.toString()); } submitObjectsRequest.setRegistryObjectList(registryObjectList); documentSetRequest.setSubmitObjectsRequest(submitObjectsRequest); // Add document to message... XdsBDocumentRepository.ihe.iti.xds_b._2007.ProvideAndRegisterDocumentSetRequestType.Document documentForMessage = new XdsBDocumentRepository.ihe.iti.xds_b._2007.ProvideAndRegisterDocumentSetRequestType.Document(); documentForMessage.setValue(xmlContent); documentForMessage.setId("urn:uuid:" + newDocumentUuid.toString()); documentSetRequest.getDocument().add(documentForMessage); logIti41AuditMsg(submissionSetId, patientId); if (logXdsBRequestMessages) { OMElement requestElement = repositoryStub.toOM(documentSetRequest, repositoryStub.optimizeContent(new javax.xml.namespace.QName("urn:ihe:iti:xds-b:2007", "ProvideAndRegisterDocumentSetRequest")), new javax.xml.namespace.QName("urn:ihe:iti:xds-b:2007", "ProvideAndRegisterDocumentSetRequest")); Files.write( Paths.get(logOutputPath + newDocumentUuid.toString() + "_ProvideAndRegisterDocumentSetRequest.xml"), requestElement.toString().getBytes()); } return repositoryStub.documentRepository_ProvideAndRegisterDocumentSetB(documentSetRequest); } catch (Exception e) { throw e; } } private Object getContainedResource(Class<?> resourceClass, List<IResource> containedResources, String idValue) { Object retVal = null; for (IResource resource : containedResources) { if ((resource.getClass().equals(resourceClass)) && (resource.getIdElement().getIdPart().equalsIgnoreCase(idValue))) { retVal = resource; break; } } return retVal; } private XPath getCustomXPath() { XPath xPath = XPathFactory.newInstance().newXPath(); //set namespace to xpath xPath.setNamespaceContext(new NamespaceContext() { private final String uri = "urn:hl7-org:v3"; private final String prefix = "hl7"; @Override public String getNamespaceURI(String prefix) { return this.prefix.equals(prefix) ? uri : null; } @Override public String getPrefix(String namespaceURI) { return this.uri.equals(namespaceURI) ? this.prefix : null; } @Override public Iterator getPrefixes(String namespaceURI) { return null; } }); return xPath; } }