List of usage examples for org.dom4j Node selectSingleNode
Node selectSingleNode(String xpathExpression);
selectSingleNode evaluates an XPath expression and returns the result as a single Node instance.
From source file:edu.scripps.fl.pubchem.PubChemXMLParserFactory.java
License:Apache License
protected void handleTargetXRefs(PCAssay assay, PCAssayPanel panel, List<Node> nodes) { for (Node n : nodes) { String name = n.selectSingleNode("PC-AssayTargetInfo_name").getText(); String id = n.selectSingleNode("PC-AssayTargetInfo_mol-id").getText(); String type = n.selectSingleNode("PC-AssayTargetInfo_molecule-type").valueOf("@value"); String database = targetType.containsKey(type) ? targetType.get(type) : type; Node taxonNode = n.selectSingleNode("PC-AssayTargetInfo_organism/BioSource/BioSource_org/Org-ref"); String taxonName = "", taxonCommon = "", taxon = ""; if (taxonNode != null) { taxonName = taxonNode.selectSingleNode("Org-ref_taxname").getText(); taxonCommon = nullSafeGet(taxonNode, "Org-ref_common", "text()"); String db = nullSafeGet(taxonNode, "Org-ref_db/Dbtag/Dbtag_db", "text()"); if (!"taxon".equals(db)) throw new RuntimeException("Non taxon BioSource Org-ref_db (was " + db + ")"); taxonNode = taxonNode.selectSingleNode("Org-ref_db/Dbtag/Dbtag_tag/Object-id/Object-id_id"); taxon = taxonNode.getText(); }//w w w. j a v a2 s.c o m XRef xref = new XRef(); xref.setXRefId(id); xref.setDatabase(database); xref.setType(type); xref.setName(name); PCAssayXRef aXref = new PCAssayXRef(); aXref.setTarget(true); aXref.setPanel(panel); aXref.setAssay(assay); aXref.setXRef(xref); if (!taxon.equals("")) { aXref.setTaxon(Long.parseLong(taxon)); aXref.setTaxonName(taxonName); aXref.setTaxonCommon(taxonCommon); } assay.getAssayXRefs().add(aXref); } }
From source file:edu.scripps.fl.pubchem.web.pug.PUGRequest.java
License:Apache License
public static void setResponseIds(Document document, Type type, Collection<Object> ids) throws Exception { String idTypePath = "//PCT-QueryAssayData_"; idTypePath += Type.AID.equals(type) ? "aids" : "scids"; Node localRoot = document.selectSingleNode(idTypePath); Node node = localRoot.selectSingleNode(".//PCT-ID-List_db"); node.setText(type.getDatabase());/*from w w w . ja va2 s.c o m*/ node = localRoot.selectSingleNode(".//PCT-ID-List_uids"); // if (node == null) // throw new Exception("Cannot find PCT-ID-List_uids node"); for (Node child : (List<Node>) node.selectNodes("*")) child.detach(); for (Object id : ids) { Element aidElem = DocumentHelper.createElement("PCT-ID-List_uids_E"); aidElem.setText(id.toString()); ((Element) node).add(aidElem); } }
From source file:edu.scripps.fl.pubchem.xml.extract.AssayExtractor.java
License:Apache License
public Assay getAssayValuesFromXML(Document doc) throws ParseException, IllegalAccessException, InvocationTargetException { Assay assay = new Assay(); PubChemXMLUtils utils = new PubChemXMLUtils(); utils.getElementText(assay, "//PC-DBTracking_source-id/Object-id/Object-id_str", doc, "externalRegId"); utils.getElementText(assay, "//PC-AssayDescription_name", doc, "name"); utils.getListofElementsText(assay, "//PC-AssayDescription_description_E", doc, "description"); utils.getListofElementsText(assay, "//PC-AssayDescription_protocol_E", doc, "protocol"); utils.getListofElementsText(assay, "//PC-AssayDescription_comment_E", doc, "comment"); utils.getElementText(assay, "//PC-ID_id", doc, "aid"); utils.getElementText(assay, "//PC-AssayDescription_grant-number_E", doc, "grantNumber"); utils.getElementText(assay, "//PC-DBTracking_name", doc, "source"); String attribute = utils.getElementAttribute("//PC-AssayDescription_activity-outcome-method", doc); if (!attribute.equals("")) assay.setActivityOutcomeMethod(attribute); attribute = utils.getElementAttribute("//PC-AssayDescription_project-category", doc); if (!attribute.equals("")) assay.setProjectCategory(attribute); Node node = doc.selectSingleNode("//PC-DBTracking_date/Date/Date_std/Date-std"); if (node != null) assay.setHoldUntilDate(/* www . j ava 2 s . c om*/ new SimpleDateFormat("MM/dd/yyyy").parse(node.selectSingleNode("Date-std_month").getText() + "/" + node.selectSingleNode("Date-std_day").getText() + "/" + node.selectSingleNode("Date-std_year").getText())); return assay; }
From source file:edu.scripps.fl.pubchem.xml.extract.CategorizedCommentExtractor.java
License:Apache License
public List<CategorizedComment> getCategorizedCommentsFromXML(Document doc) throws Exception { List<CategorizedComment> comments = new ArrayList<CategorizedComment>(); List<Node> nodes = doc.selectNodes("//PC-AssayDescription_categorized-comment/PC-CategorizedComment"); PubChemXMLUtils utils = new PubChemXMLUtils(); for (Node nn : nodes) { CategorizedComment comment = new CategorizedComment(); comment.setCommentTag(nn.selectSingleNode("PC-CategorizedComment_title").getText()); List<Node> valueNodes = nn.selectNodes("PC-CategorizedComment_comment/PC-CategorizedComment_comment_E"); String text = ""; for (Node valeuNode : valueNodes) { if (null != valeuNode.getText()) text = text + valeuNode.getText() + "\n"; }/* w ww. j a va 2 s.co m*/ comment.setCommentValue(text); comments.add(comment); } return comments; }
From source file:edu.scripps.fl.pubchem.xml.extract.PanelExtractor.java
License:Apache License
public List<Panel> getPanelValuesFromXML(Document doc) throws Exception { List<Panel> panelValues = new ArrayList<Panel>(); List<Node> nodes = doc.selectNodes( "//PC-AssayDescription_panel-info/PC-AssayPanel/PC-AssayPanel_member/PC-AssayPanelMember"); for (Node nn : nodes) { Panel panelValue = new Panel(); panelValue.setPanelName(nn.selectSingleNode("PC-AssayPanelMember_name").getText()); List<Node> targetNodes = nn.selectNodes("PC-AssayPanelMember_target/PC-AssayTargetInfo"); if (targetNodes != null && targetNodes.size() > 0) { List<PanelTarget> targets = new ArrayList<PanelTarget>(); for (Node targetNode : targetNodes) { PanelTarget target = new PanelTarget(); target.setPanelTargetName(targetNode.selectSingleNode("PC-AssayTargetInfo_name").getText()); BeanUtils.setProperty(target, "panelTargetGi", targetNode.selectSingleNode("PC-AssayTargetInfo_mol-id").getText()); target.setPanelTargetType( targetNode.selectSingleNode("PC-AssayTargetInfo_molecule-type").valueOf("@value")); targets.add(target);/*from ww w . ja v a2s . com*/ } panelValue.setPanelTarget(targets); } Node p = nn.selectSingleNode("PC-AssayPanelMember_xref"); if (p != null) { List<Integer> taxonomies = getXrefValues( "PC-AnnotatedXRef/PC-AnnotatedXRef_xref/PC-XRefData/PC-XRefData_taxonomy", p); panelValue.setPanelTaxonomy(taxonomies); List<Integer> genes = getXrefValues( "PC-AnnotatedXRef/PC-AnnotatedXRef_xref/PC-XRefData/PC-XRefData_gene", p); panelValue.setPanelGene(genes); } panelValues.add(panelValue); } return panelValues; }
From source file:edu.scripps.fl.pubchem.xml.extract.ResultTidExtractor.java
License:Apache License
public List<ResultTid> getTidValuesFromXML(Document doc) throws IllegalAccessException, InvocationTargetException { List<ResultTid> tidValues = new ArrayList<ResultTid>(); List<Node> nodes = doc.selectNodes("//PC-AssayDescription_results/PC-ResultType"); for (Node nn : nodes) { ResultTid tidValue = new ResultTid(); tidValue.setTidName(nn.selectSingleNode("PC-ResultType_name").getText()); tidValue.setTidType(nn.selectSingleNode("PC-ResultType_type").valueOf("@value")); Node node = nn.selectSingleNode("PC-ResultType_unit"); if (node != null) tidValue.setTidUnit(node.valueOf("@value")); node = nn.selectSingleNode("PC-ResultType_description/PC-ResultType_description_E"); if (node != null) tidValue.setTidDescription(node.getText()); node = nn.selectSingleNode("PC-ResultType_ac"); if (node != null) tidValue.setIsActiveConcentration(true); node = nn.selectSingleNode("PC-ResultType_tc"); if (node != null) { Node node2 = node.selectSingleNode("PC-ConcentrationAttr/PC-ConcentrationAttr_dr-id"); if (node2 != null) { BeanUtils.setProperty(tidValue, "tidPlot", node2.getText()); }/*from w ww .ja v a 2s. com*/ BeanUtils.setProperty(tidValue, "tidConcentration", node.selectSingleNode("PC-ConcentrationAttr/PC-ConcentrationAttr_concentration").getText()); } node = nn.selectSingleNode("PC-ResultType_panel-info/PC-AssayPanelTestResult"); if (node != null) { BeanUtils.setProperty(tidValue, "tidPanelNum", node.selectSingleNode("PC-AssayPanelTestResult_mid").getText()); tidValue.setTidPanelReadout( node.selectSingleNode("PC-AssayPanelTestResult_readout-annot").valueOf("@value")); } tidValues.add(tidValue); } return tidValues; }
From source file:edu.scripps.fl.pubchem.xml.extract.XrefExtractor.java
License:Apache License
public List<Xref> getXrefValuesFromXML(Document doc, List<Panel> panel) throws Exception { List<Xref> xrefs = new ArrayList<Xref>(); List<Node> nodes = doc.selectNodes("//PC-AssayDescription_xref/PC-AnnotatedXRef"); for (Node nn : nodes) { Xref xref = new Xref(); Node node = nn.selectSingleNode("PC-AnnotatedXRef_xref/PC-XRefData"); selectXref(xref, node, "PC-XRefData_aid", "AID"); selectXref(xref, node, "PC-XRefData_protein-gi", "Protein"); selectXref(xref, node, "PC-XRefData_gene", "Gene"); selectXref(xref, node, "PC-XRefData_taxonomy", "Taxonomy"); selectXref(xref, node, "PC-XRefData_mim", "OMIM"); selectXref(xref, node, "PC-XRefData_dburl", "Source Database Homepage"); selectXref(xref, node, "PC-XRefData_mesh", "MESH"); selectXref(xref, node, "PC-XRefData_sburl", "Substance Homepage"); selectXref(xref, node, "PC-XRefData_asurl", "Assay Homepage"); selectXref(xref, node, "PC-XRefData_rn", "Substance Registry #"); selectXref(xref, node, "PC-XRefData_pmid", "PMID"); selectXref(xref, node, "PC-XRefData_sid", "SID"); selectXref(xref, node, "PC-XRefData_cid", "CID"); selectXref(xref, node, "PC-XRefData_nucleotide-gi", "Nucleotide"); selectXref(xref, node, "PC-XRefData_gi", "GenBank"); selectXref(xref, node, "PC-XRefData_mmdb", "MMDB"); selectXref(xref, node, "PC-XRefData_biosystem", "Biosystems Id"); if (nn.selectSingleNode("PC-AnnotatedXRef_comment") != null) xref.setXrefComment(nn.selectSingleNode("PC-AnnotatedXRef_comment").getText()); Node citationNode = nn.selectSingleNode("PC-AnnotatedXRef_type"); if (citationNode != null) { if (citationNode.getText().equals("1")) xref.setIsPrimaryCitation(true); }/*from w w w. j a v a2s .co m*/ xrefs.add(xref); } nodes = doc.selectNodes("//PC-AssayDescription_target/PC-AssayTargetInfo"); for (Node nn : nodes) { Xref xref = new Xref(); BeanUtils.setProperty(xref, "xrefValue", nn.selectSingleNode("PC-AssayTargetInfo_mol-id").getText()); BeanUtils.setProperty(xref, "xrefTargetValue", nn.selectSingleNode("PC-AssayTargetInfo_molecule-type").getText()); BeanUtils.setProperty(xref, "isTarget", true); xrefs.add(xref); } if (panel != null) checkXrefAgainstPanel(xrefs, panel); return xrefs; }
From source file:edu.scripps.fl.pubchem.xml.extract.XrefExtractor.java
License:Apache License
public void selectXref(Xref xref, Node nn, String xrefNode, String xrefType) throws IllegalAccessException, InvocationTargetException { if (nn.selectSingleNode(xrefNode) != null) { BeanUtils.setProperty(xref, "xrefValue", nn.selectSingleNode(xrefNode).getText()); xref.setXrefType(xrefType);//from ww w .j av a 2 s.c o m } }
From source file:edu.ucsd.library.xdre.imports.RDFDAMS4ImportHandler.java
/** * Procedure to populate the RDF metadata and ingest the files *///from w ww . j av a 2s . c om public boolean execute() throws Exception { if (filesPaths != null) { File file = null; // List the source files for (int i = 0; i < filesPaths.length; i++) { file = new File(filesPaths[i]); if (file.exists()) { listFile(filesMap, file); } } } String message = ""; Document doc = null; DamsURI damsURI = null; String oid = null; int fLen = rdfFiles.length; String currFile = null; SAXReader saxReader = new SAXReader(); for (int i = 0; i < fLen && !interrupted; i++) { currFile = rdfFiles[i].getName(); setStatus( "Processing external import for file " + currFile + " (" + (i + 1) + " of " + fLen + ") ... "); try { doc = saxReader.read(rdfFiles[i]); List<Node> nodes = doc.selectNodes("//@rdf:about"); for (int j = 0; j < nodes.size(); j++) { Node nUri = nodes.get(j); String iUri = nUri.getStringValue(); Node parentNode = nUri.getParent(); String nName = parentNode.getName(); if (iUri.endsWith("/COL") || !(iUri.startsWith("http") && iUri.indexOf("/ark:/") > 0)) { // Assign ARK if (nName.endsWith("Object") || nName.endsWith("Component") || nName.endsWith("File") || (((Element) parentNode).isRootElement() || (parentNode.getParent().isRootElement() && parentNode.getParent().getName().equals("RDF")))) { String objId = iUri; if (nName.endsWith("Component") || nName.endsWith("File")) { damsURI = DamsURI.toParts(iUri, null); objId = damsURI.getObject(); } String srcObjKey = objId + "::" + rdfFiles[i].getAbsolutePath(); oid = idsMap.get(srcObjKey); // Assign new ARK if (oid == null) { oid = getNewId(); idsMap.put(srcObjKey, oid); } if (nName.endsWith("Object")) { objId = oid; objRecords.put(objId, currFile); } else if (nName.endsWith("Component") || nName.endsWith("File")) { damsURI.setObject(oid); // XXX // Assign cid and fid for Component and FIle if required objId = damsURI.toString(); } else objId = oid; nUri.setText(objId); updateReference(doc, iUri, objId); } else { String field = null; Node tNode = null; String xPath = null; Map<String, String> props = new TreeMap<String, String>(); String elemXPath = parentNode.getPath(); if (nName.endsWith("Collection") || nName.endsWith("CollectionPart")) { // Retrieve the Collection record field = "title_tesim"; xPath = "dams:title/mads:Title/mads:authoritativeLabel"; tNode = parentNode.selectSingleNode(xPath); if (tNode == null) { // Loop through to locate the rdfs:label if not selected by xPath. Node n = parentNode.selectSingleNode("dams:title"); for (Iterator<Element> it = ((Element) n).elementIterator(); it.hasNext();) { Element elem = it.next(); if (elem.getNamespacePrefix().equals("mads") && elem.getName().equals("Title")) tNode = elem.selectSingleNode("mads:authoritativeLabel"); } } } /* else if (nName.endsWith("Language") || nName.endsWith("Authority") || nName.endsWith("Subject") || nName.endsWith("Name") || nName.endsWith("Topic") || nName.endsWith("GenreForm") || nName.endsWith("Temporal") || nName.endsWith("Geographic")){ // Subject, Authority records use mads:authoritativeLabel field = "name_tesim"; xPath = "mads:authoritativeLabel"; tNode = parentNode.selectSingleNode(xPath); } */else if (nName.endsWith(COPYRIGHT)) { // Copyright records use dams:copyrightStatus, plus other properties in the next step. field = "status_tesim"; xPath = "dams:copyrightStatus"; tNode = parentNode.selectSingleNode(xPath); props = copyrightProperties(parentNode); } else if (nName.endsWith(LICENSE)) { // License records use dams:LicenseNote, plus other properties in the next step. field = "note_tesim"; xPath = "dams:licenseNote"; tNode = parentNode.selectSingleNode(xPath); props = licenseProperties(parentNode); } else if (nName.endsWith(OTHERRIGHTS)) { // Copyright records use dams:copyrightStatus, plus other properties in the next step. field = "otherRightsBasis_tesim"; xPath = "dams:otherRightsBasis"; tNode = parentNode.selectSingleNode(xPath); props = licenseProperties(parentNode); } else if (nName.endsWith(RELATEDRESOURCE)) { // RelatedResource records use dams:description, plus other properties in the next step. field = "description_tesim"; xPath = "dams:description"; tNode = parentNode.selectSingleNode(xPath); props = relatedResourceProperties(parentNode); } else if (nName.endsWith(SOURCECAPTURE)) { // SourceCapture records use dams:sourceType, plus other properties in the next step. field = "sourceType_tesim"; xPath = "dams:sourceType"; tNode = parentNode.selectSingleNode(xPath); props = sourceCaptureProperties(parentNode); } else if (elemXPath.indexOf("mads", elemXPath.lastIndexOf('/') + 1) >= 0) { // MADSScheme and Language if (nName.endsWith(MADSSCHEME) || nName.equals(LANGUAGE)) { field = "code_tesim"; xPath = "mads:code"; tNode = parentNode.selectSingleNode(xPath); if (tNode == null) { field = "name_tesim"; xPath = "rdfs:label"; tNode = parentNode.selectSingleNode(xPath); if (tNode == null) { // Loop through to locate the rdfs:label if not selected by xPath. for (Iterator<Element> it = ((Element) parentNode).elementIterator(); it .hasNext();) { Element elem = it.next(); if (elem.getNamespacePrefix().equals("rdfs") && elem.getName().equals("label")) tNode = elem; } } } } else { // Subject, Authority records use mads:authoritativeLabel field = "name_tesim"; xPath = "mads:authoritativeLabel"; tNode = parentNode.selectSingleNode(xPath); if (tNode == null) { // Try to use the mads:code for mapping when mads:authoritativeLabel is not available field = "code_tesim"; xPath = "mads:code"; tNode = parentNode.selectSingleNode(xPath); } // Mapping for mads:isMemberOfMADSScheme String madsScheme = null; Node madsSchemeNode = parentNode.selectSingleNode("mads:isMemberOfMADSScheme"); if (madsSchemeNode != null) { Node msValueNode = madsSchemeNode.selectSingleNode("@rdf:resource"); if (msValueNode != null) { madsScheme = madsSchemeNode.getStringValue(); props.put("scheme_tesim", madsScheme); } else if ((madsSchemeNode = madsSchemeNode .selectSingleNode("mads:MADSScheme")) != null && madsSchemeNode.hasContent()) { if ((msValueNode = madsSchemeNode .selectSingleNode("mads:code")) != null) { madsScheme = msValueNode.getText(); props.put("scheme_code_tesim", madsScheme); } else if ((msValueNode = madsSchemeNode .selectSingleNode("rdfs:label")) != null) { madsScheme = msValueNode.getText(); props.put("scheme_name_tesim", madsScheme); } } else { props.put("scheme_tesim", ""); } } else { props.put("scheme_tesim", null); } } } else { // XXX Other Rights records like Statute, License, Other Rights etc. field = "value_tesim"; xPath = "rdf:value"; tNode = parentNode.selectSingleNode(xPath); field = "code_tesim"; if (tNode == null) { xPath = "dams:code"; tNode = parentNode.selectSingleNode(xPath); } } if (tNode == null) { throw new Exception("Element " + xPath + " is missing from the " + nName + " record " + iUri + " in file " + currFile + "."); } updateDocument(doc, parentNode, field, tNode.getText(), props); } } else if (nName.endsWith("Object")) { objRecords.put(iUri, currFile); } } String dams4Rdf = doc.asXML(); logData("dams4_" + rdfFiles[i].getName(), dams4Rdf); // Ingest the records String subjectId = null; DamsURI objURI = null; List<DamsURI> objURIs = null; RDFStore graph = null; rdfStore = new RDFStore(); Model rdf = rdfStore.loadRDFXML(dams4Rdf); initHandler(); Model iRdf = null; int jLen = items.size(); for (int j = 0; j < jLen && !interrupted; j++) { graph = new RDFStore(); recordsCount++; // Add subject subjectId = items.get(j); try { setStatus("Processing metadata for record " + subjectId + " (" + (j + 1) + " of " + jLen + ") in file " + currFile + " ... "); boolean succeeded = false; objURIs = objects.get(subjectId); for (int k = 0; k < objURIs.size(); k++) { objURI = objURIs.get(k); iRdf = rdfStore.querySubject(objURI.toString()); graph.merge(iRdf); } // Update object //log.info(j + " ingesting record " + subjectId + ":\n" + graph.export(RDFStore.RDFXML_ABBREV_FORMAT) + "\n\n"); succeeded = damsClient.updateObject(subjectId, graph.export(RDFStore.RDFXML_ABBREV_FORMAT), Constants.IMPORT_MODE_ADD); if (!succeeded) { if (metadataFailed.indexOf(currFile) < 0) failedCount++; metadataFailed.append(subjectId + " (" + currFile + "), \n"); message = "Metadata import for record " + subjectId + " failed (" + (j + 1) + " of " + jLen + ") in file " + currFile + "."; setStatus(message); logError(message + "\n Error RDF: \n" + graph.export(RDFStore.RDFXML_ABBREV_FORMAT)); } else { recordsIngested.add(subjectId); message = "Metadata import for record " + subjectId + " succeeded (" + (j + 1) + " of " + jLen + ") in file " + currFile + ". "; setStatus(message); logMessage(message); log.info(message); // Update SOLR fre records ingested. updateSOLR(subjectId); } } catch (Exception e) { e.printStackTrace(); if (metadataFailed.indexOf(currFile) < 0) failedCount++; metadataFailed.append(subjectId + " (" + currFile + "), \n"); message = "Metadata import failed: " + e.getMessage(); setStatus(message + " (" + (j + 1) + " of " + jLen + ") in file " + currFile + "."); logError(message); } try { Thread.sleep(10); } catch (InterruptedException e) { e.printStackTrace(); interrupted = true; failedCount++; metadataFailed.append(subjectId + " (" + currFile + ") \n"); message = "Metadata import interrupted for subject " + subjectId + ". \n Error: " + e.getMessage() + "\n"; setStatus("Canceled"); clearSession(); logError(message); } } // Ingest the source file if (importOption.equalsIgnoreCase("metadataAndFiles")) { uploadFiles(rdf, currFile); } } catch (Exception e) { e.printStackTrace(); failedCount++; message = "Import failed for " + currFile + ": " + e.getMessage(); setStatus(message + " (" + (i + 1) + " of " + fLen + ")."); logError(message); } finally { // Update SOLR for files uploaded int iLen = objWithFiles.size(); for (int j = 0; j < iLen && !interrupted; j++) { updateSOLR(objWithFiles.get(j)); } } setProgressPercentage(((i + 1) * 100) / fLen); try { Thread.sleep(10); } catch (InterruptedException e) { e.printStackTrace(); interrupted = true; failedCount++; message = "Import interrupted for oject in " + currFile + ". \n Error: " + e.getMessage() + "\n"; setStatus("Canceled"); clearSession(); logError(message); } } return exeResult; }
From source file:edu.ucsd.library.xdre.imports.RDFDAMS4ImportHandler.java
/** * Update the document for DAMS ARK ID/*from w w w . ja va2s. co m*/ * @param doc * @param record * @param title * @throws Exception */ private void updateDocument(Document doc, Node record, String field, String title, Map<String, String> props) throws Exception { // Skip if the record detached if (record.getDocument() == null) return; // Subject, Authority records use mads:authoritativeLabel Node aboutAttr = record.selectSingleNode("@rdf:about"); String srcUri = aboutAttr.getStringValue(); //String nName = record.getName(); String xPath = record.getPath(); String elemName = xPath.substring(xPath.lastIndexOf("/") + 1); // MADSScheme model: MadsScheme if (elemName.endsWith("MADSScheme")) elemName = elemName.replace("MADSScheme", "Scheme"); String modelName = (elemName.substring(0, 1).toUpperCase() + elemName.substring(1)).replace(":", ""); String nKey = INFO_MODEL_PREFIX + modelName + "::" + title; if (props != null) { for (Iterator<String> it = props.keySet().iterator(); it.hasNext();) { String iKey = it.next(); nKey += "_" + iKey + "::" + props.get(iKey); } } String oid = idsMap.get(nKey); // Retrieve the record if (oid == null) { /*Map<String, String> props = null; if(nName.endsWith(COPYRIGHT)){ props = copyrightProperties(record); }*/ oid = lookupRecord(damsClient, field, title, modelName, props); if (oid == null) { // Create the record oid = getNewId(); aboutAttr.setText(oid); idsMap.put(nKey, oid); log.info("Found new redord " + srcUri + " (" + oid + ": " + field + " -- " + title); } else { // Record found. Add linking, remove it. toResourceLinking(oid, record); } } else { // Record added. Add linking, remove it. toResourceLinking(oid, record); } updateReference(doc, srcUri, oid); }