Example usage for org.dom4j Node detach

Introduction

In this page you can find the example usage for org.dom4j Node detach.

Prototype

Node detach();

Source Link

Document

Removes this node from its parent if there is one.

Usage

From source file:cz.fi.muni.xkremser.editor.server.newObject.PeriodicalBuilder.java

License:Open Source License

private void updateDcDoc(Document dcDoc, String pid, String signature, String sysno, DigitalObjectModel model) {
    Element dcRootEl = dcDoc.getRootElement();
    Attribute schemaLoc = dcRootEl.attribute("schemaLocation");
    dcRootEl.remove(schemaLoc);//w  ww. j a v a 2s  .com
    Namespace xsi = DocumentHelper.createNamespace("xsi2", FedoraNamespaces.SCHEMA_NAMESPACE_URI);
    dcRootEl.add(xsi);
    dcRootEl.addAttribute(new QName("schemaLocation", xsi),
            "http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd");

    XPath typeXpath = Dom4jUtils.createXPath("/oai_dc:dc/dc:identifier");
    List<? extends Node> nodes = typeXpath.selectNodes(dcDoc);
    for (Node node : nodes) {
        node.detach();
    }
    Element idUuid = dcRootEl.addElement("dc:identifier");
    idUuid.addText(pid);

    for (Node node : nodes) {
        if (node.getText() != null && !"".equals(node.getText().trim())
                && !node.getText().contains(Constants.FEDORA_UUID_PREFIX)) {
            Element temp = dcRootEl.addElement("dc:identifier");
            temp.addText(node.getText());
        }
    }

    if (signature != null) {
        Element idSignature = dcRootEl.addElement("dc:identifier");
        idSignature.addText("signature:" + signature);
    }
    if (sysno != null) {
        Element idSysno = dcRootEl.addElement("dc:identifier");
        idSysno.addText("sysno:" + sysno);
    }
    removeDcTypeElements(dcDoc);
    Element typeEl = dcRootEl.addElement("dc:type");
    typeEl.addText("model:" + model.getValue());
    Element rightsEl = dcRootEl.addElement("dc:rights");
    rightsEl.addText("policy:" + Policy.PUBLIC.toString().toLowerCase());
    updateDcLanguages(dcDoc);
}

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From source file:cz.mzk.editor.server.newObject.MonographBuilder.java

License:Open Source License

@SuppressWarnings("unchecked")
private void updateDcDoc(Document dcDoc, String pid, String signature, String sysno, DigitalObjectModel model) {
    Element dcRootEl = dcDoc.getRootElement();
    Attribute schemaLoc = dcRootEl.attribute("schemaLocation");
    dcRootEl.remove(schemaLoc);/*  www  . j a  va  2 s . c o m*/
    Namespace xsi = DocumentHelper.createNamespace("xsi2", FedoraNamespaces.SCHEMA_NAMESPACE_URI);
    dcRootEl.add(xsi);
    dcRootEl.addAttribute(new QName("schemaLocation", xsi),
            "http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd");

    XPath typeXpath = Dom4jUtils.createXPath("/oai_dc:dc/dc:identifier");
    List<? extends Node> nodes = typeXpath.selectNodes(dcDoc);
    for (Node node : nodes) {
        node.detach();
    }
    Element idUuid = dcRootEl.addElement("dc:identifier");
    idUuid.addText(pid);

    for (Node node : nodes) {
        if (node.getText() != null && !"".equals(node.getText().trim())
                && !node.getText().contains(Constants.FEDORA_UUID_PREFIX)) {
            Element temp = dcRootEl.addElement("dc:identifier");
            temp.addText(node.getText());
        }
    }

    if (signature != null) {
        Element idSignature = dcRootEl.addElement("dc:identifier");
        idSignature.addText("signature:" + signature);
    }
    if (sysno != null) {
        Element idSysno = dcRootEl.addElement("dc:identifier");
        idSysno.addText("sysno:" + sysno);
    }
    removeDcTypeElements(dcDoc);
    Element typeEl = dcRootEl.addElement("dc:type");
    typeEl.addText("model:" + model.getValue());
    Element rightsEl = dcRootEl.addElement("dc:rights");
    rightsEl.addText("policy:" + getPolicy().toString().toLowerCase());
    updateDcLanguages(dcDoc);
}

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From source file:cz.mzk.editor.server.newObject.MonographBuilder.java

License:Open Source License

@SuppressWarnings("unchecked")
private void removeDcTypeElements(Document doc) {
    XPath typeXpath = Dom4jUtils.createXPath("/oai_dc:dc/dc:type");
    List<? extends Node> nodes = typeXpath.selectNodes(doc);
    for (Node node : nodes) {
        node.detach();
    }/*from  w  w  w  . j  a va2  s  .  co m*/
}

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From source file:dk.netarkivet.harvester.datamodel.H1HeritrixTemplate.java

License:Open Source License

@Override
public void removeDeduplicatorIfPresent() {
    Node xpathNode = template.selectSingleNode(DEDUPLICATOR_XPATH);
    if (xpathNode != null) {
        xpathNode.detach();
    }//w  w w.  j  av  a 2  s .c o m
}

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From source file:dk.netarkivet.harvester.scheduler.jobgen.AbstractJobGenerator.java

License:Open Source License

/**
 * Once the job has been filled with {@link DomainConfiguration}s, performs the
 * following operations://from ww  w  . jav a2  s  . co m
 * <ol>
 * <li>Edit the harvest template to add/remove deduplicator configuration.</li>
 * <li></li>
 * </ol>
 * @param job the job
 */
protected void editJobOrderXml(Job job) {
    Document doc = job.getOrderXMLdoc();
    if (DEDUPLICATION_ENABLED) {
        // Check that the Deduplicator element is present in the
        //OrderXMl and enabled. If missing or disabled log a warning
        if (!HeritrixTemplate.isDeduplicationEnabledInTemplate(doc)) {
            if (log.isWarnEnabled()) {
                log.warn("Unable to perform deduplication for this job"
                        + " as the required DeDuplicator element is " + "disabled or missing from template");
            }
        }
    } else {
        // Remove deduplicator Element from OrderXML if present
        Node xpathNode = doc.selectSingleNode(HeritrixTemplate.DEDUPLICATOR_XPATH);
        if (xpathNode != null) {
            xpathNode.detach();
            job.setOrderXMLDoc(doc);
            if (log.isInfoEnabled()) {
                log.info("Removed DeDuplicator element because " + "Deduplication is disabled");
            }
        }
    }
}

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From source file:edu.scripps.fl.pubchem.web.pug.PUGRequest.java

License:Apache License

private static void setResponseIds2(Document document, Type type, Collection<Object> ids) throws Exception {
    Node node = document.selectSingleNode("//PCT-ID-List_db");
    node.setText(type.getDatabase());/* ww  w  . ja va2 s . c o  m*/
    node = document.selectSingleNode(".//PCT-ID-List_uids");
    for (Node child : (List<Node>) node.selectNodes("*"))
        child.detach();
    for (Object id : ids) {
        Element aidElem = DocumentHelper.createElement("PCT-ID-List_uids_E");
        aidElem.setText(id.toString());
        ((Element) node).add(aidElem);
    }
}

---

From source file:edu.scripps.fl.pubchem.web.pug.PUGRequest.java

License:Apache License

public static void setResponseIds(Document document, Type type, Collection<Object> ids) throws Exception {
    String idTypePath = "//PCT-QueryAssayData_";
    idTypePath += Type.AID.equals(type) ? "aids" : "scids";
    Node localRoot = document.selectSingleNode(idTypePath);
    Node node = localRoot.selectSingleNode(".//PCT-ID-List_db");
    node.setText(type.getDatabase());//from ww w  .j  ava 2  s .co  m
    node = localRoot.selectSingleNode(".//PCT-ID-List_uids");
    //      if (node == null)
    //         throw new Exception("Cannot find PCT-ID-List_uids node");
    for (Node child : (List<Node>) node.selectNodes("*"))
        child.detach();
    for (Object id : ids) {
        Element aidElem = DocumentHelper.createElement("PCT-ID-List_uids_E");
        aidElem.setText(id.toString());
        ((Element) node).add(aidElem);
    }
}

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From source file:edu.scripps.fl.pubchem.xml.CategorizedCommentXML.java

License:Apache License

public void buildCategorizedCommentDocument(Document document, List<CategorizedComment> cComments) {
    PubChemXMLUtils utils = new PubChemXMLUtils();
    if (cComments.size() > 0) {
        Element rootElement = (Element) document.selectSingleNode(rootString);
        Element cCommentElement = (Element) rootElement
                .selectSingleNode("PC-AssayDescription_categorized-comment");

        if (cCommentElement != null) {
            List<Node> nodes = cCommentElement.selectNodes("PC-CategorizedComment");
            for (Node nn : nodes)
                nn.detach();
        } else//  www.j  a va 2s.  c o  m
            cCommentElement = rootElement.addElement("PC-AssayDescription_categorized-comment");

        for (CategorizedComment cc : cComments) {
            Element element = cCommentElement.addElement("PC-CategorizedComment");
            element.addElement("PC-CategorizedComment_title").addText(cc.getCommentTag());
            utils.add_E("PC-CategorizedComment_comment", cc.getCommentValue(), element);
        }
    }
}

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From source file:edu.scripps.fl.pubchem.xml.PanelXML.java

License:Apache License

public void buildPanelDocument(Document document, List<Panel> panelValues) throws Exception {
    Integer panel = decidePanel(panelValues);
    if (panel > 0) {
        Element root = (Element) document.selectSingleNode(rootString);
        Node node = root.selectSingleNode(panelInfo);
        if (node != null) {
            node.detach();
            root.selectSingleNode(isPanel).detach();
        }/*from w  w  w.j  a  va 2  s  .  c om*/
        root.addElement(isPanel).addAttribute("value", "true");
        Element pI = root.addElement(panelInfo);
        Element assayPanel = pI.addElement("PC-AssayPanel");
        assayPanel.addElement("PC-AssayPanel_name").addText("Assays");
        assayPanel.addElement("PC-AssayPanel_descr").addText("");
        Element assayPanelMember = assayPanel.addElement("PC-AssayPanel_member");

        for (int rr = 0; rr < panelValues.size(); rr++) {
            Panel panelValue = panelValues.get(rr);
            Element member = assayPanelMember.addElement("PC-AssayPanelMember");
            member.addElement("PC-AssayPanelMember_mid").addText(rr + 1 + "");
            member.addElement("PC-AssayPanelMember_name").addText(panelValue.getPanelName());

            List<PanelTarget> panelTargets = panelValue.getPanelTarget();
            if (null != panelTargets && panelTargets.size() > 0) {
                Element target = member.addElement("PC-AssayPanelMember_target");
                for (PanelTarget panelTarget : panelTargets) {
                    Element targetInfo = target.addElement("PC-AssayTargetInfo");
                    String name = panelTarget.getPanelTargetName();
                    String type = panelTarget.getPanelTargetType();
                    if (name != null)
                        targetInfo.addElement("PC-AssayTargetInfo_name").addText(name);
                    targetInfo.addElement("PC-AssayTargetInfo_mol-id")
                            .addText("" + panelTarget.getPanelTargetGi());
                    targetInfo.addElement("PC-AssayTargetInfo_molecule-type").addAttribute("value", type)
                            .addText("" + panelTarget.getPanelTargetTypeValue());
                }
            }
            List<Integer> taxonomies = panelValue.getPanelTaxonomy();
            List<Integer> genes = panelValue.getPanelGene();
            if (null != taxonomies | null != genes) {
                Element xref = member.addElement("PC-AssayPanelMember_xref");
                if (null != taxonomies && taxonomies.size() > 0) {
                    for (Integer taxonomy : taxonomies) {
                        Element annotatedXref = xref.addElement("PC-AnnotatedXRef");
                        Element annotatedXref_xref = annotatedXref.addElement("PC-AnnotatedXRef_xref");
                        Element XrefData = annotatedXref_xref.addElement("PC-XRefData");
                        XrefData.addElement("PC-XRefData_taxonomy").addText("" + taxonomy);
                    }
                }
                if (null != genes && genes.size() > 0) {
                    for (Integer gene : genes) {
                        Element annotatedXref = xref.addElement("PC-AnnotatedXRef");
                        Element annotatedXref_xref = annotatedXref.addElement("PC-AnnotatedXRef_xref");
                        Element XrefData = annotatedXref_xref.addElement("PC-XRefData");
                        XrefData.addElement("PC-XRefData_gene").addText("" + gene);
                    }
                }
            }
        }
    }
}

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From source file:edu.scripps.fl.pubchem.xml.PubChemXMLDoc.java

License:Apache License

public void organizeXMLDoc(Document doc) {
    Element parent = (Element) doc.selectSingleNode(rootString);
    String[] nodesOrder = { name, description, protocol, comment, xref, results, revision, target,
            activityOutcome, dr, grantNumber, projectCategory, isPanel, panelInfo, categorizedComment };
    for (String nodeString : nodesOrder) {
        Node node = parent.selectSingleNode(nodeString);
        if (node != null) {
            Node clone = (Node) node.clone();
            node.detach();
            parent.add(clone);//  www. ja  v a 2 s.c om
        }
    }
    parent = (Element) doc.selectSingleNode(dbTracking);
    String[] secondNodesOrder = { "PC-DBTracking_name", "PC-DBTracking_source-id", "PC-DBTracking_date" };
    for (String nodeString : secondNodesOrder) {
        Node node = parent.selectSingleNode(nodeString);
        if (node != null) {
            Node clone = (Node) node.clone();
            node.detach();
            parent.add(clone);
        }
    }

}

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