Example usage for java.util Vector get

List of usage examples for java.util Vector get

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Introduction

In this page you can find the example usage for java.util Vector get.

Prototype

public synchronized E get(int index)

Source Link

Document

Returns the element at the specified position in this Vector.

Usage

From source file:fr.sanofi.fcl4transmart.controllers.listeners.snpData.SetPlatformListener.java

@Override
public void handleEvent(Event event) {
    Vector<String> values = this.ui.getValues();
    Vector<String> samples = this.ui.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File mappingFile = ((SnpData) this.dataType).getMappingFile();
    if (mappingFile == null) {
        this.ui.displayMessage("Error: no subject to sample mapping file");
    }//from   w w  w  . j  ava  2 s . com
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);

        try {
            BufferedReader br = new BufferedReader(new FileReader(mappingFile));
            String line;
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String platform;
                if (samples.contains(sample)) {
                    platform = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + platform
                        + "\t" + fields[5] + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.ui.displayMessage("Error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (mappingFile != null) {
                String fileName = mappingFile.getName();
                mappingFile.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((SnpData) this.dataType).setMappingFile(fileDest);
        } catch (IOException ioe) {
            this.ui.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.ui.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.ui.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:edu.ku.brc.specify.datamodel.CollectingEventAttribute.java

@Override
@Transient/*from   ww  w. j  a v a 2s  .co  m*/
public Integer getParentId() {
    Vector<Object> ids = BasicSQLUtils
            .querySingleCol("SELECT CollectingEventID FROM collectingevent WHERE CollectingEventAttributeID = "
                    + collectingEventAttributeId);
    if (ids.size() == 1) {
        return (Integer) ids.get(0);
    }
    return null;
}

From source file:edu.ku.brc.specify.ui.db.ResultSetTableModel.java

/**
 * Gets the value of the row col.//from   www . j av  a  2  s  . c o  m
 * @param rowArg the row of the cell to be gotten
 * @param colArg the column of the cell to be gotten
 */
public Object getValueAt(final int row, final int column) {
    if (row > -1 && row < cache.size()) {
        Vector<Object> rowArray = cache.get(row);
        if (column > -1 && column < rowArray.size()) {
            Object obj = rowArray.get(column);

            Class<?> dataClassObj = getColumnClass2(column); //see comment for getColumnClass().
            if (obj == null && (dataClassObj == null || dataClassObj == String.class)) {
                return "";
            }

            if (obj instanceof Calendar) {
                return scrDateFormat.format((Calendar) obj);

            } else if (obj instanceof Timestamp) {
                return scrDateFormat.format((Date) obj);
            } else if (obj instanceof java.sql.Date || obj instanceof Date) {
                return scrDateFormat.format((Date) obj);

            } else if (obj instanceof Boolean) {
                if (getColumnClass2(column) == Boolean.class) {
                    return obj;
                }
                return UIRegistry.getResourceString(obj.toString());
            }

            //System.out.println(row+" "+column+" ["+obj+"] "+getColumnClass(column).getSimpleName() + " " + useColOffset);

            UIFieldFormatterIFace formatter = captionInfo != null
                    ? captionInfo.get(column).getUiFieldFormatter()
                    : null;
            if (formatter != null && formatter.isInBoundFormatter()) {
                return formatter.formatToUI(obj);
            }

            return obj;
        }
    }

    return "No Data";
}

From source file:com.mysql.stresstool.RunnableQueryInsert.java

public void run() {

    BufferedReader d = null;/*from  ww  w . ja va  2 s . c  om*/
    Connection conn = null;

    try {
        if (jdbcUrlMap.get("dbType") != null && !((String) jdbcUrlMap.get("dbType")).equals("MySQL")) {
            conn = DriverManager.getConnection((String) jdbcUrlMap.get("dbType"), "test", "test");
        } else
            conn = DriverManager.getConnection((String) jdbcUrlMap.get("jdbcUrl"));
    } catch (SQLException ex) {
        ex.printStackTrace();
    }

    if (conn != null) {

        try {

            Statement stmt = null;
            //                ResultSet rs = null;
            //                ResultSet rs2 = null;

            conn.setAutoCommit(false);
            stmt = conn.createStatement();
            stmt.execute("SET AUTOCOMMIT=0");
            long execTime = 0;
            int pkStart = 0;
            int pkEnds = 0;
            int intDeleteInterval = 0;
            int intBlobInterval = 0;
            int intBlobIntervalLimit = StressTool.getNumberFromRandom(4).intValue();
            ThreadInfo thInfo;

            long threadTimeStart = System.currentTimeMillis();
            active = true;

            thInfo = new ThreadInfo();
            thInfo.setId(this.ID);
            thInfo.setType("insert");
            thInfo.setStatusActive(this.isActive());

            StressTool.setInfo(this.ID, thInfo);
            boolean lazy = false;
            int lazyInterval = 0;

            for (int repeat = 0; repeat <= repeatNumber; repeat++) {
                String query = null;
                ArrayList insert1 = null;
                ArrayList insert2 = null;
                int pk = 0;

                if (repeat > 0 && lazyInterval < 500) {
                    lazy = true;
                    ++lazyInterval;
                } else {
                    lazy = false;
                    lazyInterval = 0;
                }

                intBlobInterval++;
                //IMPLEMENTING lazy
                Vector v = this.getTablesValues(lazy);

                insert1 = (ArrayList<String>) v.get(0);
                insert2 = (ArrayList<String>) v.get(1);

                //                    System.out.println(insert1);
                //                    System.out.println(insert2);

                //                    pk = ((Integer) v.get(2)).intValue();

                int[] iLine = { 0, 0 };

                //                    pkStart = StressTool.getNumberFromRandom(2147483647).intValue();
                //                    pkEnds = StressTool.getNumberFromRandom(2147483647).intValue();

                try {

                    long timeStart = System.currentTimeMillis();

                    if (this.ignoreBinlog)
                        stmt.execute("SET sql_log_bin=0");
                    stmt.execute("SET GLOBAL max_allowed_packet=1073741824");

                    if (dbType.equals("MySQL") && !engine.toUpperCase().equals("BRIGHTHOUSE"))
                        stmt.execute("BEGIN");
                    else
                        stmt.execute("COMMIT");
                    //                                stmt.execute("SET TRANSACTION NAME 'TEST'");
                    {
                        Iterator<String> it = insert1.iterator();
                        while (it.hasNext()) {
                            stmt.addBatch(it.next());
                        }
                    }

                    if (!this.doSimplePk) {
                        if (intBlobInterval > intBlobIntervalLimit) {
                            Iterator<String> it = insert2.iterator();
                            while (it.hasNext()) {
                                stmt.addBatch(it.next());
                            }
                            intBlobInterval = 0;

                        }
                    }

                    iLine = stmt.executeBatch();
                    stmt.clearBatch();
                    //                            System.out.println("Query1 = " + insert1);
                    //                            System.out.println("Query2 = " + insert2);
                    //                            stmt.execute("START TRANSACTION");
                    //                            stmt.execute(insert1);
                    //                            iLine = stmt.executeBatch();
                    //                            conn.commit();
                    long timeEnds = System.currentTimeMillis();
                    execTime = (timeEnds - timeStart);

                } catch (Exception sqle) {
                    conn.rollback();
                    System.out.println("FAILED QUERY1==" + insert1);
                    System.out.println("FAILED QUERY2==" + insert2);
                    sqle.printStackTrace();
                    System.exit(1);
                    //conn.close();
                    //this.setJdbcUrl(jdbcUrl);
                    //System.out.println("Query Insert TH RE-INIZIALIZING");

                } finally {
                    //                           conn.commit();
                    stmt.execute("COMMIT");
                    //                            intDeleteInterval++;
                    if (doLog) {

                        System.out.println("Query Insert TH = " + this.getID() + " Loop N = " + repeat + " "
                                + iLine[0] + "|" + ((iLine.length > 1) ? iLine[1] : 0) + " Exec Time(ms) ="
                                + execTime + " Running = " + repeat + " of " + repeatNumber + " to go ="
                                + (repeatNumber - repeat) + " Using Lazy=" + lazy);
                    }
                }
                thInfo.setExecutedLoops(repeat);
                if (sleepFor > 0 || this.getSleepWrite() > 0) {
                    if (this.getSleepWrite() > 0) {
                        Thread.sleep(getSleepWrite());
                    } else
                        Thread.sleep(sleepFor);
                }

            }

            long threadTimeEnd = System.currentTimeMillis();
            this.executionTime = (threadTimeEnd - threadTimeStart);
            //                this.setExecutionTime(executionTime);
            active = false;
            //                System.out.println("Query Insert TH = " + this.getID() + " COMPLETED!  TOTAL TIME = " + execTime + "(ms) Sec =" + (execTime/1000));

            thInfo.setExecutionTime(executionTime);
            thInfo.setStatusActive(false);
            StressTool.setInfo(this.ID, thInfo);
            return;

        } catch (Exception ex) {
            ex.printStackTrace();
            try {
                conn.close();
            } catch (SQLException e) {
                // TODO Auto-generated catch block
                e.printStackTrace();
            }
        }

    }

}

From source file:bboss.org.apache.velocity.runtime.resource.loader.JarResourceLoader.java

/**
 * Called by Velocity to initialize the loader
 * @param configuration/*  w  ww .  j av a2s.  c  o  m*/
 */
public void init(ExtendedProperties configuration) {
    log.trace("JarResourceLoader : initialization starting.");

    // rest of Velocity engine still use legacy Vector
    // and Hashtable classes. Classes are implicitly
    // synchronized even if we don't need it.
    Vector paths = configuration.getVector("path");
    StringUtils.trimStrings(paths);

    /*
     *  support the old version but deprecate with a log message
     */

    if (paths == null || paths.size() == 0) {
        paths = configuration.getVector("resource.path");
        StringUtils.trimStrings(paths);

        if (paths != null && paths.size() > 0) {
            log.debug("JarResourceLoader : you are using a deprecated configuration"
                    + " property for the JarResourceLoader -> '<name>.resource.loader.resource.path'."
                    + " Please change to the conventional '<name>.resource.loader.path'.");
        }
    }

    if (paths != null) {
        log.debug("JarResourceLoader # of paths : " + paths.size());

        for (int i = 0; i < paths.size(); i++) {
            loadJar((String) paths.get(i));
        }
    }

    log.trace("JarResourceLoader : initialization complete.");
}

From source file:de.fhg.fokus.odp.middleware.ckan.CKANGatewayUtil.java

/**
 * The function receives a vector with details for a set of revisions and
 * returns the details for the packages affected by these revisions.
 * //  ww w . j av  a2s . c  o  m
 * @param revisionsDetails
 *            a vector of strings containing the JSON details for the
 *            revisions.
 * @return a vector of maps with the details for each affected package.
 */
@SuppressWarnings({ "rawtypes", "unchecked" })
public static Vector getUpdatedDataSetsDetails(Vector<String> revisionsDetails) {

    // check the input packages
    if (revisionsDetails == null) {
        return null;
    }

    // the vector to store return results
    Vector toreturn = new Vector();

    // a variable to hold the already visited packages
    Vector<String> visitedPackages = new Vector<String>();

    // iterate over each single package
    for (int i = 0; i < revisionsDetails.size(); i++) {

        // parse the JSON string and obtain an array of JSON objects
        Object obj = JSONValue.parse(revisionsDetails.get(i));
        Map array = (Map) obj;

        // get the packages
        JSONArray arr = (JSONArray) (array.get("packages"));

        // iterate over all the packages
        for (int j = 0; j < arr.size(); j++) {

            // get the name of the next package
            String pkg = (String) arr.get(j);

            // check whether the package was already visited
            if (visitedPackages.contains(pkg)) {
                continue;
            }

            // add the package to the list of visited packages
            visitedPackages.add(pkg);

            // get the package details
            Object pkgObject = CKANGatewayCore.getDataSetDetails(pkg);

            // add the package details to the toreturn object
            if (pkgObject != null) {
                toreturn.add(pkgObject);
            }
        }
    }

    return toreturn;
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.snpData.SetTissueListener.java

@Override
public void handleEvent(Event event) {
    Vector<String> values = this.ui.getValues();
    Vector<String> samples = this.ui.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File mappingFile = ((SnpData) this.dataType).getMappingFile();
    if (mappingFile == null) {
        this.ui.displayMessage("Error: no subject to sample mapping file");
    }/*from w ww.jav  a2 s. co  m*/
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);

        try {
            BufferedReader br = new BufferedReader(new FileReader(mappingFile));
            String line;
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String tissueType;
                if (samples.contains(sample)) {
                    tissueType = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + fields[4]
                        + "\t" + tissueType + "\t" + fields[6] + "\t" + fields[7] + "\t" + "PLATFORM+TISSUETYPE"
                        + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.ui.displayMessage("File error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (mappingFile != null) {
                String fileName = mappingFile.getName();
                mappingFile.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((SnpData) this.dataType).setMappingFile(fileDest);
        } catch (IOException ioe) {
            this.ui.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.ui.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.ui.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:com.innate.cresterp.explorer.services.LocationService.java

public List<Company> queryLocalCompanies(final String latitude, final String longitude, final String user,
        final String radius) {

    NetworkManager networkManager = NetworkManager.getInstance();
    networkManager.start();/*from w  w  w .jav a  2s . c  om*/
    networkManager.addErrorListener(new ActionListener() {

        public void actionPerformed(ActionEvent evt) {
            NetworkEvent n = (NetworkEvent) evt;
            n.getError().printStackTrace();
            System.out.println(n.getError());
        }
    });

    ConnectionRequest request;
    request = new ConnectionRequest() {

        int chr;
        StringBuffer sb = new StringBuffer();
        String response = "";

        @Override
        protected void readResponse(InputStream input) throws IOException {

            Vector vector = new Vector();
            JSONParser parser = new JSONParser();
            Hashtable hm = parser.parse(new InputStreamReader(input));

            vector = (Vector) hm.get("companies");
            if (vector == null) {
                Company company = new Company();

                company.setDescription("Searching within 1KM radius...");
                company.setName("Nothing found yet");
                company.setAddress("...");
                company.setCategory("...");
                company.setEmail("...");
                company.setWebsite("...");
                company.setMobile("....");

                if (!companies.contains(company)) {
                    companies.add(company);
                }
            } else {
                for (int i = 0; i < vector.size(); i++) {

                    Hashtable h = (Hashtable) vector.get(i);
                    Company company = new Company();

                    company.setAddress(h.get("address").toString());
                    company.setCategory(h.get("category").toString());
                    company.setDescription(h.get("description").toString());
                    company.setEmail(h.get("email").toString());
                    company.setId(h.get("id").toString());
                    company.setLatitude(h.get("latitude").toString());
                    company.setLongitude(h.get("longitude").toString());
                    company.setMobile(h.get("mobile").toString());
                    company.setName(h.get("name").toString());
                    company.setWebsite(h.get("website").toString());

                    if (!companies.contains(company)) {
                        companies.add(company);

                    }
                }
            }

        }

        @Override
        protected void handleException(Exception err) {

            /* Display.getInstance().callSerially(new Runnable() {
                    
            public void run() {
                Dialog.show("Oops", "Please make sure you still have data", "Ok", "Cancel");
            }
             });*/

        }

    };

    String url = new UrlManager().getGetLocalCompanies() + "action=2&userlat=" + latitude + "&userlong="
            + longitude + "&distance=" + radius;
    url = new Utility(null, null).replaceAll(url, " ", "%20");
    request.setUrl(url);
    request.setPost(false);

    networkManager.addToQueueAndWait(request);

    return companies;
}

From source file:info.puzz.trackprofiler.gui.TrackProfilerFrame.java

protected void drawChart() throws TrackProfilerException {
    if (this.track == null) {
        throw new TrackProfilerException("track_not_loaded"); //$NON-NLS-1$
    }/*from   ww w  .j  a va2 s . c  o m*/

    this.computeTrackInfo();

    String name = trackFile != null ? trackFile.getName() : "TrackProfiler"; //$NON-NLS-1$

    JFreeChart chart;

    if (TrackProfilerAppContext.getInstance().isFilledGraph()) {
        chart = ChartFactory.createXYAreaChart(name, new Message(Messages.LENGTH).toString(),
                new Message(Messages.ELEVATION).toString(), this.toDataset(), PlotOrientation.VERTICAL, true,
                true, false);
    } else {
        chart = ChartFactory.createXYLineChart(name, new Message(Messages.LENGTH).toString(),
                new Message(Messages.ELEVATION).toString(), this.toDataset(), PlotOrientation.VERTICAL, true,
                true, false);
    }

    chart.setBackgroundPaint(Color.white);

    XYPlot xyplot = (XYPlot) chart.getPlot();
    XYAreaRenderer xyarearenderer = new XYAreaRenderer();
    xyarearenderer.setSeriesPaint(0, new Color(186, 197, 231, 200));

    xyplot.setRenderer(0, xyarearenderer);
    drawSelectedPoints(xyplot);

    if (this.track.getWaypoints().size() > 0) {

        Waypoints markerPoints = new Waypoints();
        markerPoints.addAll(this.track.getWaypoints());

        for (int i = 0; i < this.track.getWaypoints().size(); i++) {
            Waypoint waypoint = (Waypoint) this.track.getWaypoints().get(i);
            prepareWaypontOnChart(xyplot, waypoint);
        }

        xyplot.setAxisOffset(new RectangleInsets(5, 5, 5, 5));
        xyplot.getRangeAxis().setUpperMargin(0.15);
    }

    if (showExtreemes) {
        Vector/* <TrackExtreeme> */ extreemes = this.track.findExtremes();
        for (int i = 0; i < extreemes.size(); i++) {
            Waypoint ex = (Waypoint) extreemes.get(i);
            prepareWaypontOnChart(xyplot, ex);
        }
    }

    getChartPanel().setChart(chart);
    getJPanel1().repaint();
}

From source file:edu.ucla.stat.SOCR.analyses.gui.Clustering.java

/**This method defines the specific statistical Analysis to be carried our on the user specified data. ANOVA is done in this case. */
public void doAnalysis() {

    if (dataTable.isEditing())
        dataTable.getCellEditor().stopCellEditing();

    if (!hasExample) {
        JOptionPane.showMessageDialog(this, DATA_MISSING_MESSAGE);
        return;/* w  ww .ja  va  2  s.  co  m*/
    }

    Data data = new Data();

    String dendroData[][] = new String[dataTable.getRowCount()][dataTable.getColumnCount()];

    for (int k = 0; k < dataTable.getRowCount(); k++)
        for (int j = 0; j < dataTable.getColumnCount(); j++) {

            if (dataTable.getValueAt(k, j) != null && !dataTable.getValueAt(k, j).equals("")) {
                dendroData[k][j] = (String) dataTable.getValueAt(k, j);
            }
        }

    ClusteringData = new LinkedList<String[]>(); // added (for lstdades)

    Vector<String> vectorDataRow = new Vector();

    for (int k = 0; k < dataTable.getRowCount(); k++) {
        for (int j = 0; j < dataTable.getColumnCount(); j++) {
            if (dendroData[k][j] != null && !dendroData[k][j].equals(""))
                vectorDataRow.add(dendroData[k][j]);
        }
        String stringDataRow[] = new String[vectorDataRow.size()];

        for (int i = 0; i < vectorDataRow.size(); i++) {
            stringDataRow[i] = vectorDataRow.get(i);
        }

        if (vectorDataRow.size() != 0) {
            ClusteringData.add(k, stringDataRow); // now exactly same as lstdades
            vectorDataRow.clear();
        }
    }

    f.getPwBtn().doLoad("Calculate");

    resultPanelTextArea.append("Click on DENDROGRAM panel to view the graph"
            + "\nSee SOCR Hierarchical Clustering Activity:\n"
            + "http://wiki.stat.ucla.edu/socr/index.php/SOCR_EduMaterials_AnalysisActivities_HierarchicalClustering");

    /* every one has to have its own, otherwise one Exception spills the whole. */

    /* doGraph is underconstruction thus commented out. annie che 20060314 */
    //if (useGraph)
}