Example usage for java.util Vector get

List of usage examples for java.util Vector get

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Introduction

In this page you can find the example usage for java.util Vector get.

Prototype

public synchronized E get(int index)

Source Link

Document

Returns the element at the specified position in this Vector.

Usage

From source file:cl.utfsm.cdbChecker.CDBChecker.java

/**
 * This method validates the XML files./*from  w  w  w.j  av  a  2  s .c  om*/
 * 
 * @param filenames name with absolute path of the XML file to validate.
 */
protected void XMLValidate(Vector<String> filenames) {

    System.out.println("*** Will verify XML files in directory: " + this.XMLPath);

    for (int i = 0; i < filenames.size(); i++) {

        File file = new File(filenames.get(i));
        if (file.length() != 0) {
            if (verbose) {
                System.out.print("    " + filenames.get(i));
                /*for(int j=0;j<(90-(int)((String)filename.get(i)).length())/8;j++)
                                  System.out.print("\t");
                 */}
            String targetNamespace = ((xsd_targetns.toString()).replace(',', ' ')).replace('=', ' ')
                    .replace('{', ' ').replace('}', ' ');
            errorFlag = false;
            try {
                validateFileEncoding(filenames.get(i));

                SP.reset();
                SP.setFeature("http://xml.org/sax/features/validation", true);
                SP.setFeature("http://apache.org/xml/features/validation/schema", true);
                SP.setFeature("http://xml.org/sax/features/namespace-prefixes", false);
                SP.setFeature("http://xml.org/sax/features/namespaces", true);
                SP.setErrorHandler(new CDBErrorHandler(this));
                SP.setProperty("http://apache.org/xml/properties/schema/external-schemaLocation",
                        targetNamespace);

                FileInputStream fis = new FileInputStream(file);
                InputSource inputSource = new InputSource(fis);
                inputSource.setSystemId("file:///" + file.getAbsolutePath());
                SP.parse(inputSource);
                fis.close();
                if (verbose && !errorFlag)
                    System.out.println("[OK]");
            } catch (SAXException e) {
                System.out.println("[SAXException] " + e.getMessage());
            } catch (IOException e) {
                System.out.println("[IOException] Probably " + filenames.get(i) + " doesn't exist.");
            }
        } else {
            System.out.print(filenames.get(i) + ": [Warning] file is empty.\n");
        }

    }
}

From source file:gsn.http.A3DWebServiceImpl.java

public String[] getMeteoDataMeasurement(String sensor, String measurement, long from, long to) {

    String str_from = Long.toString(from);
    String str_to = Long.toString(to);

    StringBuilder query = new StringBuilder("select timed, " + measurement + " from " + sensor
            + " where timed >= " + str_from + " and timed <= " + str_to + " order by timed ASC");
    logger.warn("query => " + query);
    DataEnumerator result;/*www .ja  v  a2  s  . co  m*/
    try {
        result = Main.getStorage(sensor).executeQuery(query, false);
    } catch (SQLException e) {
        logger.error("ERROR IN EXECUTING, query: " + query);
        logger.error(e.getMessage(), e);
        return new String[] { "ERROR IN EXECUTING, query: " + query };
    }

    Vector<String> meteoData = new Vector<String>();

    while (result.hasMoreElements()) {
        StreamElement se = result.nextElement();
        StringBuilder sb = new StringBuilder();

        sb.append(new StringBuilder("TIMED=" + se.getTimeStamp()).toString() + ";");

        for (int i = 0; i < se.getFieldNames().length; i++) {
            //sb.append(se.getFieldNames()[i]).append(":");
            if (se.getData()[i] != null)
                if (se.getFieldTypes()[i] == DataTypes.BINARY)
                    sb.append(measurement + "=" + se.getData()[i].toString());
                else
                    sb.append(measurement + "=" + StringEscapeUtils.escapeXml(se.getData()[i].toString()));
        }
        meteoData.add(sb.toString());
    }
    //result.close();

    String v_meteoData[] = new String[meteoData.size()];
    for (int i = 0; i < meteoData.size(); i++)
        v_meteoData[i] = meteoData.get(i);

    return v_meteoData;
}

From source file:gsn.http.A3DWebServiceImpl.java

public String[] getLatestMeteoData(String sensor) {

    String vsFields = "*";

    StringBuilder query = new StringBuilder(
            "select " + vsFields + " from " + sensor + " order by timed DESC limit 1 offset 0");
    DataEnumerator result;/*from   www. j  av a2  s  . c  o m*/
    try {
        result = Main.getStorage(sensor).executeQuery(query, true);
    } catch (SQLException e) {
        logger.error("ERROR IN EXECUTING, query: " + query);
        logger.error(e.getMessage(), e);
        return new String[] { "ERROR IN EXECUTING, query: " + query };
    }

    Vector<String> latestMeteoData = new Vector<String>();

    while (result.hasMoreElements()) {
        StreamElement se = result.nextElement();

        latestMeteoData.add(new StringBuilder("TIMED=" + se.getTimeStamp()).toString());

        for (int i = 0; i < se.getFieldNames().length; i++) {
            StringBuilder sb = new StringBuilder();
            sb.append(se.getFieldNames()[i]).append("=");
            if (se.getData()[i] != null)
                if (se.getFieldTypes()[i] == DataTypes.BINARY)
                    sb.append(se.getData()[i].toString());
                else
                    sb.append(StringEscapeUtils.escapeXml(se.getData()[i].toString()));
            latestMeteoData.add(sb.toString());
        }

    }
    //result.close();

    String v_latestMeteoData[] = new String[latestMeteoData.size()];
    for (int i = 0; i < latestMeteoData.size(); i++)
        v_latestMeteoData[i] = latestMeteoData.get(i);

    return v_latestMeteoData;
}

From source file:net.sf.ginp.browser.FolderManagerImpl.java

/**
 * Gets the foldersInDirectory attribute of the PicCollection object.
 * @param root the root directory/*from   ww  w . j  a v a  2 s. c  om*/
 * @param  relPath  Description of the Parameter
 * @return          The foldersInDirectory value
 */
private String[] getFoldersInDirectory(final String root, final String relPath) {
    long duration = System.currentTimeMillis() - picCacheTimeout;

    if ((picCacheTimeout < 0) || (duration > MAX_CACHE)) {
        synchronized (folderCache) {
            //Clearing a cache while doing a get can
            //cause hashmap to hang.  Hence all the synchronized blocks
            folderCacheTimeout = System.currentTimeMillis();
            folderCache.clear();
        }
    }

    synchronized (folderCache) {
        if (folderCache.get(root + relPath) != null) {
            return (String[]) folderCache.get(root + relPath);
        }
    }

    Vector dirs = new Vector();

    File dir = new File(root + relPath);

    if (dir.isDirectory()) {
        String[] files = dir.list();
        Arrays.sort(files);

        for (int i = 0; i < files.length; i++) {
            File file = new File(root + relPath + "/" + files[i]);

            if (file.isDirectory()) {
                if (!(files[i].startsWith("."))) {
                    dirs.add(files[i]);
                }
            }
        }
    }

    String[] retFolders = new String[dirs.size()];

    for (int i = 0; i < dirs.size(); i++) {
        retFolders[i] = relPath + (String) dirs.get(i);
    }

    Arrays.sort(retFolders);

    synchronized (folderCache) {
        folderCache.put(root + relPath, retFolders);
    }

    return retFolders;
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetSiteIdListener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setSiteIdUI.getValues();
    Vector<String> samples = this.setSiteIdUI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setSiteIdUI.displayMessage("Error: no subject to sample mapping file");
    }//from  w  w w  . j  a v  a2  s . co m
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String site;
                if (samples.contains(sample)) {
                    site = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + site + "\t" + fields[2] + "\t" + sample + "\t" + fields[4] + "\t"
                        + fields[5] + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.setSiteIdUI.displayMessage("Error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setSiteIdUI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setSiteIdUI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setSiteIdUI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:eionet.meta.dao.mysql.DataElementDAOImpl.java

/**
 * {@inheritDoc}/*from   w  w  w . ja v  a 2  s .  com*/
 *
 * @throws SQLException
 */
@Override
public List<Attribute> getDataElementAttributes() throws SQLException {
    List<Attribute> result = new ArrayList<Attribute>();
    DDSearchEngine searchEngine = new DDSearchEngine(getConnection());

    @SuppressWarnings("rawtypes")
    Vector attrs = searchEngine.getDElemAttributes();

    for (int i = 0; i < attrs.size(); i++) {
        DElemAttribute attribute = (DElemAttribute) attrs.get(i);

        if (attribute.displayFor("CH1") || attribute.displayFor("CH2")) {
            Attribute a = new Attribute();
            a.setId(Integer.parseInt(attribute.getID()));
            a.setName(attribute.getName());
            a.setShortName(attribute.getShortName());

            result.add(a);
        }
    }
    return result;
}

From source file:at.tuwien.ifs.somtoolbox.reportgenerator.output.SOMDescriptionLATEX.java

/**
 * creates and outputs one out of two possible tables the first possible table: \\\\ the first table contains for
 * each unit only the number of input vectors mapped to it, and a pie chart image of the class distribution within
 * this unit. (lookup == null) If no class information is available, this table is not created\\\\ \\\\ The second
 * table additionally contains the ids of input vectors selected by the user within the unit they are mapped to.
 * Therefore lookup must be a hashtable that contains for each unit (key = "x_y") a list of InputDatum objects
 * specifying the input elements mapped to this unit. If for a key there's no list, then nothing is mapped to this
 * unit. if no class information is available, the table does not contain the number of input vectors mapped to each
 * unit//from  w w w.  ja  va  2 s  . c  o m
 * 
 * @param lookup a hashtable with the content specified above to map input vectors to units
 * @param classInformationAvailable true if class information (and therefore pie chart diagrams for the units are
 *            available, false otherwise
 */
protected void printDistributionDetailTable(Hashtable<String, Vector<InputDatum>> lookup,
        boolean classInformationAvailable) {

    File pieDir = null;
    if (classInformationAvailable) {
        pieDir = new File(
                this.imgDir + "pieCharts_" + this.testrun.getRunId() + System.getProperty("file.separator"));
    }

    this.writer.appendLatexOutput("\n\\begin{table}\n\\begin{center}\n\\begin{tabular}{");
    for (int x = 0; x < Integer
            .parseInt(((String) this.testrun.getMapProperty(TestRunResultCollection.keyXDim))); x++) {
        if (x == 0) {
            this.writer.appendOutput("|");
        }

        this.writer.appendOutput("|l");
        if (x == Integer.parseInt(((String) this.testrun.getMapProperty(TestRunResultCollection.keyXDim)))
                - 1) {
            this.writer.appendOutput("||");
        }
    }
    this.writer.appendLatexOutput("}\n");
    this.writer.appendOutput("\\hline\\hline");

    // as we want to create html output, we first have to iterate about the rows (tr elements)
    for (int y = 0; y < Integer
            .parseInt(((String) this.testrun.getMapProperty(TestRunResultCollection.keyYDim))); y++) {

        // and only within these elements about the columns (td elements)
        for (int x = 0; x < Integer
                .parseInt(((String) this.testrun.getMapProperty(TestRunResultCollection.keyXDim))); x++) {

            String img = "";
            String numbDiv = "";
            String mappedInputsDiv = "";
            String content1 = "";

            // the class pie chart and number of input items per unit (as these number is encoded within the pie
            // chart images names
            if (classInformationAvailable) {
                String[] matches = pieDir.list(new PrefixFileFilter(x + "_" + y + "_")); // lookup whether
                // there's an image
                if (matches != null && matches.length > 0) {
                    // image exists => insert it
                    String number = matches[0].substring((x + "_" + y + "_").length());
                    number = number.substring(0, number.length() - 4);

                    img = "\n\\includegraphicstotab[width=20pt]{" + SOMDescriptionLATEX.imgSubdir
                            + "/pieCharts_" + this.testrun.getRunId() + "/" + matches[0] + "}\n";
                    numbDiv = "" + number;
                    content1 = numbDiv + img;
                }
            } else {
                int count = this.testrun.getNumberOfInputsOnUnit(x, y);
                if (count > 0) {
                    numbDiv = "" + count;
                    content1 = numbDiv;
                }
            }
            // the mapped input vectors
            if (lookup != null) {
                String key = x + "_" + y;
                Vector<InputDatum> mapped = lookup.get(key);
                if (mapped != null) {
                    for (int i = 0; i < mapped.size(); i++) {
                        mappedInputsDiv += "\"" + mapped.get(i).getLabel() + "\"\\\\\n";
                    }
                }
            }
            String content = content1 + mappedInputsDiv;

            // if there's an empty unit (if no unit => show noting)
            if (content.length() == 0 && this.testrun.hasUnitOn(x, y)) {
                content = " ";
            }

            // write the table cell
            this.writer.appendOutput(content);
            if (x + 1 < Integer
                    .parseInt(((String) this.testrun.getMapProperty(TestRunResultCollection.keyXDim)))) {
                this.writer.appendOutput("&\n");
            }
        } // for x
        this.writer.appendLatexOutput("\\\\\\hline\n");
    } // for y
    this.writer.appendLatexOutput(
            "\\hline\n\\end{tabular}\n\\caption{Visualisation of the Hit Histogram and the corresponding Pie-chart Class images}\n\\label{tab:pie}\n\\end{center}\n\\end{table}\n");
}

From source file:cn.labthink.ReadAccess060.java

private void outputexcelCell(Vector columns, Vector data, int cellno) {
    if (outputfile == null) {
        return;//  ww  w .j  a  va2s.  c om
    }
    if (book == null) {
        try {
            //
            book = Workbook.createWorkbook(outputfile);
        } catch (IOException ex) {
            Logger.getLogger(ReadAccess060.class.getName()).log(Level.SEVERE, null, ex);
        }
    } else {
        //?
    }

    try {

        WritableSheet sheet1 = book.createSheet("Cell" + cellno, cellno + 1);// 0
        int count = columns.size();
        for (int i = 0; i < count; i++) {
            Label l = new Label(i, 0, (String) columns.get(i));//i0
            sheet1.addCell(l);
        }
        int irow = 1;
        //            System.out.println("rows:" + data.size());
        for (Iterator it = data.iterator(); it.hasNext();) {
            Vector row = (Vector) it.next();
            for (int i = 0; i < count; i++) {
                Label l = new Label(i, irow, (String) row.get(i));//iirow
                sheet1.addCell(l);
            }
            irow++;
        }
        //            book.write();
        //            book.close();
    } catch (WriteException ex) {
        Logger.getLogger(ReadAccess060.class.getName()).log(Level.SEVERE, null, ex);
    }

}

From source file:cn.labthink.ReadAccess330.java

private void outputexcelCell(Vector columns, Vector data, int cellno) {
    if (outputfile == null) {
        return;//from   w ww  . j  av  a 2 s . c  om
    }
    if (book == null) {
        try {
            //
            book = Workbook.createWorkbook(outputfile);
        } catch (IOException ex) {
            Logger.getLogger(ReadAccess330.class.getName()).log(Level.SEVERE, null, ex);
        }
    } else {
        //?
    }

    try {

        WritableSheet sheet1 = book.createSheet("Cell" + cellno, cellno + 1);// 0
        int count = columns.size();
        for (int i = 0; i < count; i++) {
            Label l = new Label(i, 0, (String) columns.get(i));//i0
            sheet1.addCell(l);
        }
        int irow = 1;
        //            System.out.println("rows:" + data.size());
        for (Iterator it = data.iterator(); it.hasNext();) {
            Vector row = (Vector) it.next();
            for (int i = 0; i < count; i++) {
                Label l = new Label(i, irow, (String) row.get(i));//iirow
                sheet1.addCell(l);
            }
            irow++;
        }
        //            book.write();
        //            book.close();
    } catch (WriteException ex) {
        Logger.getLogger(ReadAccess330.class.getName()).log(Level.SEVERE, null, ex);
    }

}