Example usage for java.util SortedSet add

List of usage examples for java.util SortedSet add

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Introduction

In this page you can find the example usage for java.util SortedSet add.

Prototype

boolean add(E e);

Source Link

Document

Adds the specified element to this set if it is not already present (optional operation).

Usage

From source file:gov.nih.nci.caarray.dao.ProjectDaoTest.java

@Test
public void testGetTermsForExperiment() {
    Transaction tx = null;/*ww w  .  j  a  v  a 2  s.c  o m*/
    try {
        tx = this.hibernateHelper.beginTransaction();
        final Organism org = new Organism();
        org.setScientificName("Foo");
        org.setTermSource(DUMMY_TERM_SOURCE);
        Project p = new Project();
        Experiment e = p.getExperiment();
        e.setProject(p);
        e.setTitle("test title");
        final SortedSet<AssayType> assayTypes = new TreeSet<AssayType>();
        assayTypes.add(DUMMY_ASSAYTYPE_1);
        e.setAssayTypes(assayTypes);
        e.setManufacturer(new Organization());
        e.setOrganism(org);
        daoObject.save(p);
        daoObject.save(DUMMY_ASSAYTYPE_1);
        daoObject.save(DUMMY_ASSAYTYPE_2);
        assertEquals(0, daoObject.getCellTypesForExperiment(e).size());
        assertEquals(0, daoObject.getDiseaseStatesForExperiment(e).size());
        assertEquals(0, daoObject.getTissueSitesForExperiment(e).size());
        assertEquals(0, daoObject.getMaterialTypesForExperiment(e).size());
        tx.commit();
    } catch (final DAOException e) {
        this.hibernateHelper.rollbackTransaction(tx);
        throw e;
    }
}

From source file:Arguments.java

/**
 * Returns a verbose String that documents this Arguments instance. It summarizes your options
 * into required, non-required, and positional fields. For long args it also tells you which
 * fields should have a value if it is present.
 *//*from ww  w .j  av  a2s  .c  o  m*/
public String getDocumentation() {
    StringBuilder buf = new StringBuilder("\n");
    int maxFlagSize = 0;
    SortedSet<String> reqList = new TreeSet<String>();
    SortedSet<String> nonReqList = new TreeSet<String>();

    if (programName.length() > 0) {
        buf.append(programName + ": ");
    }
    if (shortProgramDoc.length() > 0) {
        buf.append(shortProgramDoc + "\n");
    } else {
        buf.append("Complete documentation...\n");
    }

    // add flags to required/non-required sets
    for (String docMe : docs.keySet()) {
        maxFlagSize = Math.max(maxFlagSize, docMe.length());
        if (requireFlag.contains(docMe)) {
            reqList.add(docMe);
        } else {
            nonReqList.add(docMe);
        }
    }

    // add positional fields to required/non-required sets
    for (int i = 0; i < positionalDocs.size(); i++) {
        List<String> posDoc = positionalDocs.get(i);
        String pseudoFlag = getPseudoFlag(i, posDoc.get(0));
        maxFlagSize = Math.max(maxFlagSize, pseudoFlag.length());
    }
    if (reqList.size() > 0) {
        buf.append("codeTitle>Required flags:\n\n");
        buf.append(getDocumentation(reqList, maxFlagSize));
    }
    if (nonReqList.size() > 0) {
        buf.append("\n  Non-required flags:\n\n");
        buf.append(getDocumentation(nonReqList, maxFlagSize));
    }
    if (positionalDocs.size() > 0) {
        buf.append("\n   Positional fields:\n\n");
        for (int i = 0; i < positionalDocs.size(); i++) {
            List<String> posDoc = positionalDocs.get(i);
            String pseudoFlag = getPseudoFlag(i, posDoc.get(0));
            buf.append(formatDocumentation(pseudoFlag, space, maxFlagSize, posDoc.get(1), 70));
        }
    }
    return buf.toString();
}

From source file:net.sourceforge.fenixedu.domain.candidacyProcess.mobility.MobilityApplicationProcess.java

private void addCandidacy(final Map<Degree, SortedSet<SecondCycleIndividualCandidacyProcess>> result,
        final SecondCycleIndividualCandidacyProcess process) {
    SortedSet<SecondCycleIndividualCandidacyProcess> values = result.get(process.getCandidacySelectedDegree());
    if (values == null) {
        result.put(process.getCandidacySelectedDegree(),
                values = new TreeSet<SecondCycleIndividualCandidacyProcess>(
                        SecondCycleIndividualCandidacyProcess.COMPARATOR_BY_CANDIDACY_PERSON));
    }/*from www . j  a v a2 s  . com*/
    values.add(process);
}

From source file:io.wcm.config.core.impl.ParameterProviderBridge.java

@SuppressWarnings("unchecked")
private ConfigurationMetadata toConfigMetadata(List<Parameter<?>> parameters) {
    SortedSet<PropertyMetadata<?>> properties = new TreeSet<>(new Comparator<PropertyMetadata<?>>() {
        @Override//from   w ww  .ja  v  a  2  s. com
        public int compare(PropertyMetadata<?> o1, PropertyMetadata<?> o2) {
            String sort1 = StringUtils.defaultString(o1.getLabel(), o1.getName());
            String sort2 = StringUtils.defaultString(o2.getLabel(), o2.getName());
            return sort1.compareTo(sort2);
        }
    });

    for (Parameter<?> parameter : parameters) {
        PropertyMetadata<?> property;
        if (parameter.getType().equals(Map.class)) {
            property = toPropertyStringArray((Parameter<Map>) parameter);
        } else {
            property = toProperty(parameter);
        }
        String label = (String) parameter.getProperties().get(EditorProperties.LABEL);
        String description = (String) parameter.getProperties().get(EditorProperties.DESCRIPTION);
        String group = (String) parameter.getProperties().get(EditorProperties.GROUP);
        if (group != null) {
            label = group + ": " + StringUtils.defaultString(label, parameter.getName());
        }
        properties.add(property.label(label).description(description));
    }

    return new ConfigurationMetadata(DEFAULT_CONFIG_NAME, properties, false)
            .label("wcm.io Configuration Parameters");
}

From source file:org.openmrs.module.hl7output.util.RHEA_ORU_R01Handler.java

private Person getProvider(PV1 pv1) throws HL7Exception {
    XCN hl7Provider = pv1.getAttendingDoctor(0);
    Integer providerId = Context.getHL7Service().resolvePersonId(hl7Provider);
    if (providerId == null) {
        log.info(//www  .ja v a2s  .c o m
                "ID extracted from the HL7 message does not match with SHR records, a basic patient will be created...");
        Person providerCandidate = new Person();
        providerCandidate.setGender("N/A");
        PersonName name = new PersonName();

        if (hl7Provider.getGivenName().getValue() != null) {
            name.setGivenName(hl7Provider.getGivenName().getValue());
        } else {
            name.setGivenName("BLANK");
        }

        if (hl7Provider.getFamilyName().getSurname().getValue() != null) {
            name.setFamilyName(hl7Provider.getFamilyName().getSurname().getValue());
        } else {
            name.setFamilyName("BLANK");
        }

        SortedSet<PersonName> names = new TreeSet<PersonName>();

        names.add(name);
        providerCandidate.setNames(names);

        PersonAttributeType ECIDAttributeType = Context.getPersonService().getPersonAttributeType("ECID");

        if (ECIDAttributeType == null) {
            log.info("Creating a PersonAttributeType for ECID since it does not exsist");
            ECIDAttributeType = new PersonAttributeType();
            ECIDAttributeType.setName("ECID");
            ECIDAttributeType.setDescription("Stores the ECID of the Person object");
            Context.getPersonService().savePersonAttributeType(ECIDAttributeType);
        }

        PersonAttribute ecidAtrribute = new PersonAttribute();
        ecidAtrribute.setAttributeType(ECIDAttributeType);
        ecidAtrribute.setValue(hl7Provider.getIDNumber().getValue());

        PersonAttributeType roleAttributeType = Context.getPersonService().getPersonAttributeType("Role");

        //We need to mark this patient as a potential provider. 
        //The ideal way to do this would be to create a user object and set its Role to Provider.
        //However, this would result in the creation and storage of an additional object in the database.
        //Furthermore, we would be forced to define an username and password for each of the new users. 
        //Therefore, I am merely creating a person attribute of type Role, and setting it to "Provider" (for now).

        if (roleAttributeType == null) {
            log.info("Creating a PersonAttributeType for Role since it does not exsist");
            roleAttributeType = new PersonAttributeType();
            roleAttributeType.setName("Role");
            roleAttributeType.setDescription("Stores the Role of the Person object");
            Context.getPersonService().savePersonAttributeType(roleAttributeType);
        }

        PersonAttribute roledAtrribute = new PersonAttribute();
        roledAtrribute.setAttributeType(roleAttributeType);
        roledAtrribute.setValue("Provider");

        SortedSet<PersonAttribute> attributes = new TreeSet<PersonAttribute>();
        attributes.add(ecidAtrribute);
        attributes.add(roledAtrribute);

        providerCandidate.setAttributes(attributes);

        Person candidate = Context.getPersonService().savePerson(providerCandidate);
        log.info("Created person id :" + candidate.getId() + " as a basic person for the missing provider");
        providerId = candidate.getId();
    }
    Person provider = new Person(providerId);
    return provider;
}

From source file:jp.zippyzip.web.ListServlet.java

String toJsonZips(ParentChild data, String zip, PersistenceManager pm) throws JSONException {

    String zip2 = zip.substring(3);
    SortedSet<String> keys = new TreeSet<String>();
    boolean start = true;
    StringBuilder ret = new StringBuilder("{\"zip1\":\"");

    ret.append(data.getParents().getFirst());
    ret.append("\",\"zip2\":\"");
    ret.append(zip2);//from  ww  w  .  j  a v  a  2  s . c om
    ret.append("\",\"zips\":[");

    for (String json : data.getChildren()) {

        JSONObject jo = new JSONObject(json);

        if (!jo.optString("zip2", "").equals(zip2)) {
            continue;
        }
        keys.add(jo.optString("key", ""));
    }

    for (String key : keys) {

        try {

            ParentChild zips = pm.getObjectById(ParentChild.class, key);
            City city = City.fromJson(zips.getParents().getLast());

            for (String json : zips.getChildren()) {

                JSONObject jo = new JSONObject(json);

                if (!jo.optString("code", "").equals(zip)) {
                    continue;
                }

                if (start) {
                    start = false;
                } else {
                    ret.append(",");
                }

                jo.put("x0402", city.getCode());
                jo.put("city", city.getName());
                jo.remove("add1Yomi");
                jo.remove("add2Yomi");
                jo.remove("corpYomi");
                ret.append(jo.toString());
            }

        } catch (JDOObjectNotFoundException e) {
        }
    }

    return ret.append("]}").toString();
}

From source file:org.bedework.timezones.common.leveldb.LdbCachedData.java

private AliasMaps buildAliasMaps() throws TzException {
    try {/*from w  ww.j av a2 s.c  om*/
        open();

        final AliasMaps maps = new AliasMaps();

        maps.byTzid = new HashMap<>();
        maps.byAlias = new HashMap<>();
        maps.aliases = new Properties();

        final StringBuilder aliasStr = new StringBuilder();

        try (DBIterator it = db.iterator()) {
            for (it.seekToFirst(); it.hasNext(); it.next()) {
                final String key = Iq80DBFactory.asString(it.peekNext().getKey());

                if (!key.startsWith(aliasPrefix)) {
                    continue;
                }

                final TzAlias alias = getJson(it.peekNext().getValue(), TzAlias.class);

                final String aliasId = alias.getAliasId();
                final StringBuilder ids = new StringBuilder();
                String delim = "";

                for (final String s : alias.getTargetIds()) {
                    ids.append(delim);

                    final String id = escape(s);
                    ids.append(id);
                    delim = ",";

                    SortedSet<String> as = maps.byTzid.get(id);

                    if (as == null) {
                        as = new TreeSet<>();
                        maps.byTzid.put(id, as);
                    }

                    as.add(aliasId);
                }

                aliasStr.append(escape(aliasId));
                aliasStr.append('=');
                aliasStr.append(ids.toString());
                aliasStr.append('\n');

                maps.aliases.setProperty(aliasId, ids.toString());

                maps.byAlias.put(aliasId, alias);
            }
        }

        maps.aliasesStr = aliasStr.toString();

        return maps;
    } catch (final Throwable t) {
        throw new TzException(t);
    } finally {
        close();
    }
}

From source file:net.sourceforge.fenixedu.domain.Lesson.java

public SortedSet<YearMonthDay> getAllLessonInstanceDates() {
    SortedSet<YearMonthDay> dates = new TreeSet<YearMonthDay>();
    for (LessonInstance instance : getLessonInstancesSet()) {
        dates.add(instance.getDay());
    }//  w  w  w . j  a v  a2  s.c  om
    return dates;
}

From source file:edu.jhuapl.tinkerpop.AccumuloGraphConfiguration.java

public SortedSet<Text> getSplits() {
    String[] val = conf.getStringArray(Keys.SPLITS);
    if ((val == null) || (val.length == 0)) {
        return null;
    }/*from   w  ww .  ja v  a  2s  .  co m*/
    SortedSet<Text> splits = new TreeSet<Text>();
    for (String s : val) {
        splits.add(new Text(s));
    }
    return splits;
}

From source file:gov.nih.nci.caarray.web.action.project.ProjectFilesActionTest.java

private SortedSet<CaArrayFile> getImportedFileSet() throws IOException {
    final SortedSet<CaArrayFile> fileSet = new TreeSet<CaArrayFile>();

    final CaArrayFile file1 = new CaArrayFile();
    file1.setName("file1");
    file1.setType(AFFYMETRIX_CDF.getName());
    file1.setFileStatus(FileStatus.IMPORTED);
    fileSet.add(file1);

    final CaArrayFile file2 = new CaArrayFile();
    file2.setName("file2");
    file2.setType(AGILENT_CSV.getName());
    file2.setFileStatus(FileStatus.VALIDATED);
    fileSet.add(file2);/*  w  ww . j  a  v a  2 s. c  om*/

    final CaArrayFile file3 = new CaArrayFile();
    file3.setName("file3");
    file3.setType(null);
    file3.setFileStatus(FileStatus.VALIDATED);
    fileSet.add(file3);
    return fileSet;
}