List of usage examples for java.util List set
E set(int index, E element);
From source file:de.innovationgate.webgate.api.jdbc.PortletRegistryImplV4.java
@Override public void updatePortlet(WGPortlet portletToUpdate) throws WGAPIException { startProfileEdit();/* w ww . j av a 2 s . c om*/ if (portletToUpdate.isRoot()) { throw new WGIllegalArgumentException("Cannot update the root portlet"); } List regs = _profile.getPortletkeys(); for (int idx = 0; idx < regs.size(); idx++) { String reg = (String) regs.get(idx); WGPortlet portlet = deserializePortlet(reg, portletToUpdate.getApplicationDb()); // We do not need to check appDb here bc. in this portlet registry impl the appDb is implicitly contained in the portlet key if (portlet.getKey().equals(portletToUpdate.getKey())) { regs.set(idx, serializePortlet(portletToUpdate)); return; } } throw new WGIllegalArgumentException( "No portlet of id '" + portletToUpdate.getKey() + "' has yet been registered"); }
From source file:cn.com.sinosoft.util.exception.NestableDelegate.java
/** * Trims the stack frames. The first set is left untouched. The rest * of the frames are truncated from the bottom by comparing with * one just on top.//from w w w. ja va 2 s .co m * * @param stacks The list containing String[] elements * @since 2.0 */ protected void trimStackFrames(List stacks) { for (int size = stacks.size(), i = size - 1; i > 0; i--) { String[] curr = (String[]) stacks.get(i); String[] next = (String[]) stacks.get(i - 1); List currList = new ArrayList(Arrays.asList(curr)); List nextList = new ArrayList(Arrays.asList(next)); ExceptionUtils.removeCommonFrames(currList, nextList); int trimmed = curr.length - currList.size(); if (trimmed > 0) { currList.add("\t... " + trimmed + " more"); stacks.set(i, currList.toArray(new String[currList.size()])); } } }
From source file:com.amastigote.xdu.query.module.WaterAndElectricity.java
private List<String> query_useInfo(Duration duration) throws IOException { getPageAttributes(USEINFO_SUFFIX);// w w w. jav a 2 s . c om String OUTPUT_DATA = "But_Seach3="; switch (duration) { case ONE_MONTH: OUTPUT_DATA += ONE_MONTH; break; case THREE_MONTH: OUTPUT_DATA += THREE_MONTH; break; default: throw new IllegalArgumentException("Bad parameter, check document for help"); } OUTPUT_DATA += "&__VIEWSTATE="; OUTPUT_DATA += VIEWSTATE; OUTPUT_DATA += "&HiddenField_webName="; OUTPUT_DATA += "&HiddenField_UserID="; OUTPUT_DATA += ID; Document document = getPage(OUTPUT_DATA, USEINFO_SUFFIX); Elements elements = document.select("td"); List<String> stringArrayList = new ArrayList<>(); for (Element td : elements) { String tmp = td.text(); tmp = tmp.replaceAll(" ", ""); if (!"".equals(tmp)) { if (tmp.contains("???")) { stringArrayList.add(tmp.substring(0, tmp.indexOf("???"))); stringArrayList.add(tmp.substring(tmp.indexOf("???"))); continue; } stringArrayList.add(tmp); } } for (int i = 0; i < stringArrayList.size(); i++) { stringArrayList.set(i, stringArrayList.get(i).substring(stringArrayList.get(i).indexOf("") + 1)); } /* * (stringArrayList): * - 0, ???? * - ? [ ? | | ? | ?/? | ??? ] * - , (5n), n??? * * - ?: ?null! */ return stringArrayList; }
From source file:com.github.brandtg.StlDecomposition.java
/** * Constructs the STL decomposition of a time series. * * <p>/*w w w . ja va2 s . com*/ * times.length == series.length * </p> */ public StlResult decompose(double[] times, double[] series) { double[] trend = new double[series.length]; double[] seasonal = new double[series.length]; double[] remainder = new double[series.length]; double[] robustness = null; double[] detrend = new double[series.length]; double[] combinedSmoothed = new double[series.length]; for (int l = 0; l < config.getNumberOfRobustnessIterations(); l++) { for (int k = 0; k < config.getNumberOfInnerLoopPasses(); k++) { // Step 1: De-trending for (int i = 0; i < series.length; i++) { detrend[i] = series[i] - trend[i]; } // Get cycle sub-series with padding on either side int numberOfObservations = config.getNumberOfObservations(); CycleSubSeries cycle = new CycleSubSeries(times, series, robustness, detrend, numberOfObservations); cycle.compute(); List<double[]> cycleSubseries = cycle.getCycleSubSeries(); List<double[]> cycleTimes = cycle.getCycleTimes(); List<double[]> cycleRobustnessWeights = cycle.getCycleRobustnessWeights(); // Step 2: Cycle-subseries Smoothing for (int i = 0; i < cycleSubseries.size(); i++) { double[] smoothed = loessSmooth(cycleTimes.get(i), cycleSubseries.get(i), config.getSeasonalComponentBandwidth(), cycleRobustnessWeights.get(i)); cycleSubseries.set(i, smoothed); } // Combine smoothed series into one for (int i = 0; i < cycleSubseries.size(); i++) { double[] subseriesValues = cycleSubseries.get(i); for (int cycleIdx = 0; cycleIdx < subseriesValues.length; cycleIdx++) { combinedSmoothed[numberOfObservations * cycleIdx + i] = subseriesValues[cycleIdx]; } } // Step 3: Low-Pass Filtering of Smoothed Cycle-Subseries double[] filtered = lowPassFilter(combinedSmoothed, robustness); // Step 4: Detrending of Smoothed Cycle-Subseries for (int i = 0; i < seasonal.length; i++) { seasonal[i] = combinedSmoothed[i] - filtered[i]; } // Step 5: Deseasonalizing for (int i = 0; i < series.length; i++) { trend[i] = series[i] - seasonal[i]; } // Step 6: Trend Smoothing trend = loessSmooth(times, trend, config.getTrendComponentBandwidth(), robustness); } // --- Now in outer loop --- // Calculate remainder for (int i = 0; i < series.length; i++) { remainder[i] = series[i] - trend[i] - seasonal[i]; } // Calculate robustness weights using remainder robustness = robustnessWeights(remainder); } if (config.isPeriodic()) { for (int i = 0; i < config.getNumberOfObservations(); i++) { // Compute weighted mean for one season double sum = 0.0; int count = 0; for (int j = i; j < config.getNumberOfDataPoints(); j += config.getNumberOfObservations()) { sum += seasonal[j]; count++; } double mean = sum / count; // Copy this to rest of seasons for (int j = i; j < config.getNumberOfDataPoints(); j += config.getNumberOfObservations()) { seasonal[j] = mean; } } // Recalculate remainder for (int i = 0; i < series.length; i++) { remainder[i] = series[i] - trend[i] - seasonal[i]; } } return new StlResult(times, series, trend, seasonal, remainder); }
From source file:com.amalto.core.storage.hibernate.SystemScatteredTypeMapping.java
Object _setValues(Session session, DataRecord from, Wrapper to) {
ClassLoader contextClassLoader = Thread.currentThread().getContextClassLoader();
TypeMapping mapping = mappings.getMappingFromUser(from.getType());
Collection<FieldMetadata> fields;
if (mapping != null) {
fields = mapping.getUser().getFields();
} else {//from w w w . j a v a2s . c om
fields = from.getType().getFields();
}
for (FieldMetadata field : fields) {
FieldMetadata mappedDatabaseField;
if (mapping != null) {
mappedDatabaseField = mapping.getDatabase(field);
} else {
mappedDatabaseField = getDatabase(field);
}
if (mappedDatabaseField == null) {
continue;
// throw new IllegalStateException("Field '" + field.getName() + "' was expected to have a database mapping");
}
if (field instanceof ContainedTypeFieldMetadata) {
if (!(mappedDatabaseField instanceof ReferenceFieldMetadata)) {
throw new IllegalStateException("Contained elements are expected to be mapped to reference.");
}
ReferenceFieldMetadata referenceFieldMetadata = (ReferenceFieldMetadata) mappedDatabaseField;
if (!field.isMany()) {
DataRecord referencedObject = (DataRecord) readValue(from, field, mappedDatabaseField, session);
if (referencedObject != null) {
TypeMapping mappingFromUser = mappings.getMappingFromUser(referencedObject.getType());
ComplexTypeMetadata referencedType = mappingFromUser != null ? mappingFromUser.getDatabase()
: referencedObject.getType();
Wrapper existingValue = (Wrapper) to.get(referenceFieldMetadata.getName());
boolean needCreate = existingValue == null;
if (!needCreate) {
ComplexTypeMetadata existingType = ((StorageClassLoader) contextClassLoader)
.getTypeFromClass(existingValue.getClass());
needCreate = !existingType.equals(referencedType);
}
Wrapper object = needCreate ? createObject(contextClassLoader, referencedType)
: existingValue;
to.set(referenceFieldMetadata.getName(), _setValues(session, referencedObject, object));
if (needCreate) {
session.persist(object);
}
} else {
to.set(referenceFieldMetadata.getName(), null);
}
} else {
List<DataRecord> dataRecords = (List<DataRecord>) readValue(from, field, mappedDatabaseField,
session);
Object value;
if (mapping != null) {
value = to.get(mapping.getDatabase(field).getName());
} else {
value = to.get(getDatabase(field).getName());
}
if (dataRecords != null) {
List<Wrapper> existingValue = (List<Wrapper>) value;
if (existingValue != null) {
((PersistentList) existingValue).forceInitialization();
}
List<Wrapper> objects = existingValue == null ? new ArrayList<Wrapper>(dataRecords.size())
: existingValue;
int i = 0;
for (DataRecord dataRecord : dataRecords) {
if (i < objects.size() && objects.get(i) != null) {
objects.set(i, (Wrapper) _setValues(session, dataRecord, objects.get(i)));
} else {
Wrapper object = createObject(contextClassLoader, dataRecord.getType());
objects.add((Wrapper) _setValues(session, dataRecord, object));
session.persist(object);
}
i++;
}
// TMDM-5257: Remove the deleted items
while (objects.size() > dataRecords.size()) {
objects.remove(objects.size() - 1);
}
to.set(referenceFieldMetadata.getName(), objects);
} else {
if (value != null && value instanceof List) {
((List) value).clear();
}
}
}
} else if (field instanceof ReferenceFieldMetadata) {
if (!field.isMany()) {
DataRecord referencedObject = (DataRecord) readValue(from, field, mappedDatabaseField, session);
if (referencedObject != null) {
Collection<FieldMetadata> keyFields = referencedObject.getType().getKeyFields();
Object referenceId;
if (keyFields.size() > 1) {
List<Object> referenceIdList = new LinkedList<Object>();
for (FieldMetadata keyField : keyFields) {
referenceIdList
.add(readValue(referencedObject, keyField, mappedDatabaseField, session));
}
referenceId = referenceIdList;
} else {
referenceId = readValue(referencedObject, keyFields.iterator().next(),
mappedDatabaseField, session);
}
to.set(mappedDatabaseField.getName(),
getReferencedObject(contextClassLoader, session,
mappings.getMappingFromUser(referencedObject.getType()).getDatabase(),
referenceId));
} else {
to.set(mappedDatabaseField.getName(), null);
}
} else {
List<DataRecord> referencedObjectList = (List<DataRecord>) readValue(from, field,
mappedDatabaseField, session);
if (referencedObjectList != null) {
List<Object> wrappers = new LinkedList<Object>();
for (DataRecord dataRecord : referencedObjectList) {
Collection<FieldMetadata> keyFields = dataRecord.getType().getKeyFields();
Object referenceId;
if (keyFields.size() > 1) {
List<Object> referenceIdList = new LinkedList<Object>();
for (FieldMetadata keyField : keyFields) {
referenceIdList
.add(readValue(dataRecord, keyField, mappedDatabaseField, session));
}
referenceId = referenceIdList;
} else {
referenceId = readValue(dataRecord, keyFields.iterator().next(),
mappedDatabaseField, session);
}
wrappers.add(getReferencedObject(contextClassLoader, session, dataRecord.getType(),
referenceId));
}
to.set(mappedDatabaseField.getName(), wrappers);
} else {
Object value = to.get(mappedDatabaseField.getName());
if (value != null && value instanceof List) {
((List) value).clear();
}
}
}
} else {
if (mappedDatabaseField.isMany()) {
List<Object> oldValues = (List<Object>) to.get(mappedDatabaseField.getName());
List<Object> newValues = (List<Object>) readValue(from, field, mappedDatabaseField, session);
if (oldValues != null) {
resetList(oldValues, newValues);
} else {
to.set(mappedDatabaseField.getName(), newValues);
}
} else {
to.set(mappedDatabaseField.getName(), readValue(from, field, mappedDatabaseField, session));
}
}
}
return to;
}
From source file:dkpro.similarity.uima.io.MeterCorpusReader.java
@Override public List<CombinationPair> getAlignedPairs() throws ResourceInitializationException { List<CombinationPair> pairs = new ArrayList<CombinationPair>(); List<File> sourceDirs = listDirectories(new File(inputDir.getAbsolutePath() + "/PA/annotated")); for (File sourceDir : sourceDirs) { File sourceFile = new ArrayList<File>(FileUtils.listFiles(sourceDir, new String[] { "sgml" }, false)) .get(0);/*from w w w . ja v a2 s .c o m*/ File suspiciousDir = new File( sourceDir.getAbsolutePath().replace("PA", "newspapers").replace("annotated", "rawtexts")); Collection<File> suspiciousFiles = FileUtils.listFiles(suspiciousDir, new String[] { "txt" }, false); for (File suspiciousFile : suspiciousFiles) { try { // Source files has a 13-line header. Remove it first. List<String> sourceLines = FileUtils.readLines(sourceFile); for (int i = 0; i < 13; i++) { sourceLines.remove(0); } // Also remove the 5-line footer for (int i = 0; i < 5; i++) { sourceLines.remove(sourceLines.size() - 1); } // Besides that, lines may end with a "<" character. Remove it, too. for (int i = 0; i < sourceLines.size(); i++) { String line = sourceLines.get(i); if (line.endsWith("<")) { line = line.substring(0, line.length() - 1); sourceLines.set(i, line); } } String source = StringUtils.join(sourceLines, LF); String suspicious = FileUtils.readFileToString(suspiciousFile); // Get IDs String sourceID = sourceFile.getAbsolutePath() .substring(sourceFile.getAbsolutePath().indexOf("meter") + 6); sourceID = sourceID.substring(0, sourceID.length() - 5); sourceID = sourceID.replace("annotated/", ""); String suspiciousID = suspiciousFile.getAbsolutePath() .substring(suspiciousFile.getAbsolutePath().indexOf("meter") + 6); suspiciousID = suspiciousID.substring(0, suspiciousID.length() - 4); suspiciousID = suspiciousID.replace("rawtexts/", ""); CombinationPair pair = new CombinationPair(inputDir.getAbsolutePath()); pair.setID1(suspiciousID); pair.setID2(sourceID); pair.setText1(suspicious); pair.setText2(source); pairs.add(pair); } catch (IOException e) { throw new ResourceInitializationException(e); } } } return pairs; }
From source file:bard.pubchem.xml.PubChemXMLParserFactory.java
protected void populateAssayResultsFromXML(PCAssay assay, Node assayDescriptionNode) { List<Node> assayResultNodes = assayDescriptionNode .selectNodes("../../../PC-AssaySubmit_data/PC-AssayResults"); if (assayResultNodes.size() == 0) return;// ww w .jav a2 s . c o m for (Node resultNode : assayResultNodes) { PCAssayResult result = new PCAssayResult(); String val = resultNode.selectSingleNode("PC-AssayResults_sid").valueOf("text()"); result.setSID(Long.parseLong(val)); val = resultNode.selectSingleNode("PC-AssayResults_outcome").valueOf("@value"); val = val.substring(0, 1).toUpperCase() + val.substring(1); result.setOutcome(val); val = resultNode.selectSingleNode("PC-AssayResults_rank").valueOf("text()"); result.setRankScore(Integer.parseInt(val)); List<Node> assayDataNodes = resultNode.selectNodes("PC-AssayResults_data/PC-AssayData"); List<String> all = GrowthList.decorate(new ArrayList<String>(assay.getColumns().size() - 2)); result.setAllValues(all); for (Node node : assayDataNodes) { val = node.valueOf("PC-AssayData_tid/text()"); int index = Integer.parseInt(val) - 1; val = node.selectSingleNode(".//*[starts-with(name(),'PC-AssayData_value_')]").getText(); all.set(index, val); } assay.getResults().add(result); } }
From source file:com.rr.missouri.ui.reports.reportController.java
@RequestMapping(value = "/getCriteriaList.do", method = RequestMethod.POST) public @ResponseBody ModelAndView getCriteriaList(HttpSession session, @RequestParam(value = "startDate", required = true) String startDate, @RequestParam(value = "endDate", required = true) String endDate, @RequestParam(value = "entity3Ids", required = true) List<Integer> entity3Ids, @RequestParam(value = "reportIds", required = true) List<Integer> reportIds) throws Exception { List<programOrgHierarchy> orgHierarchyList = hierarchymanager.getProgramOrgHierarchy(programId); //need to rearrange date SimpleDateFormat dateformat = new SimpleDateFormat("MM/dd/yyyy"); Date sd = dateformat.parse(startDate); Date ed = dateformat.parse(endDate); //set up report request reportRequest rr = new reportRequest(); rr.setProgramId(programId);/*from www . j av a 2 s . c o m*/ rr.setProgramHeirarchyId(orgHierarchyList.get(orgHierarchyList.size() - 1).getId()); rr.setStartDateTime(sd); rr.setEndDateTime(ed); rr.setEntity3Ids(entity3Ids); rr.setReportIds(reportIds); reportCriteriaField rcf = reportmanager.getreportCriteriaFieldByOrder(programId, reportIds.get(0), 1); //if it contains null, we switch out to not provided List<reportChoices> criteriaList = reportmanager.getCriteriaListWithCW(rcf, rr); if (criteriaList.size() > 0) { //we check for null and replace if (criteriaList.get(0).getDisplayVal() == null) { reportChoices rc = new reportChoices(); rc.setDisplayVal("Not Provided"); rc.setInsertVal("^^^^^"); criteriaList.set(0, rc); } } ModelAndView mav = new ModelAndView(); mav.setViewName("/reports/criteriaDiv"); mav.addObject("criteriaList", criteriaList); mav.addObject("reportCriteriaField", rcf); return mav; }
From source file:com.indeed.imhotep.sql.IQLTranslator.java
/** * Handles converting queries of the form GROUP BY diff(field, filter1, filter2, limit) SELECT metric * to queries like: GROUP BY field[top limit by abs(filter1*metric-filter2*metric)] select abs(filter1*metric-filter2*metric), filter1*metric, filter2*metric. * This properly handles the case where filtered and grouped by field has multiple terms per doc (e.g. grp, rcv). * Modifies the passed in lists.// w w w. j a v a 2 s . c om */ private static void handleDiffGrouping(List<Grouping> groupings, List<Stat> stats) { for (int i = 0; i < groupings.size(); i++) { final Grouping grouping = groupings.get(i); if (!(grouping instanceof DiffGrouping)) { continue; } final Stat selectStat = stats.get(0); DiffGrouping diff = (DiffGrouping) grouping; Stat filter1 = diff.getFilter1(); Stat filter2 = diff.getFilter2(); Stat stat1 = mult(filter1, selectStat); Stat stat2 = mult(filter2, selectStat); Stat diffStat = abs(sub(stat1, stat2)); stats.set(0, diffStat); // TODO: make client understand if (stats.size() > 1) { stats.set(1, stat1); } else { stats.add(stat1); } if (stats.size() > 2) { stats.set(2, stat2); } else { stats.add(stat2); } groupings.set(i, new FieldGrouping(diff.getField(), diff.getTopK(), diffStat, false)); } }
From source file:com.rr.wabshs.ui.reports.reportController.java
@RequestMapping(value = "/getCriteriaList.do", method = RequestMethod.POST) public @ResponseBody ModelAndView getCriteriaList(HttpSession session, @RequestParam(value = "startDate", required = true) String startDate, @RequestParam(value = "endDate", required = true) String endDate, @RequestParam(value = "entity3Ids", required = true) List<Integer> entity3Ids, @RequestParam(value = "reportIds", required = true) List<Integer> reportIds) throws Exception { List<programOrgHierarchy> orgHierarchyList = hierarchymanager.getProgramOrgHierarchy(programId); //need to rearrange date SimpleDateFormat dateformat = new SimpleDateFormat("MM/dd/yyyy"); Date sd = dateformat.parse(startDate); Date ed = dateformat.parse(endDate); //set up report request reportRequest rr = new reportRequest(); rr.setProgramId(programId);//from w w w . ja va 2 s . co m rr.setProgramHeirarchyId(orgHierarchyList.get(orgHierarchyList.size() - 1).getId()); rr.setStartDateTime(sd); rr.setEndDateTime(ed); rr.setEntity3Ids(entity3Ids); rr.setReportIds(reportIds); reportCriteriaField rcf = reportmanager.getreportCriteriaFieldByOrder(programId, reportIds.get(0), 1); //if it contains null, we switch out to not provided List<reportChoices> criteriaList = reportmanager.getCriteriaListWithCW(rcf, rr, entity3Ids); if (criteriaList.size() > 0) { //we check for null and replace if (criteriaList.get(0).getDisplayVal() == null) { reportChoices rc = new reportChoices(); rc.setDisplayVal("Not Provided"); rc.setInsertVal("^^^^^"); criteriaList.set(0, rc); } } ModelAndView mav = new ModelAndView(); mav.setViewName("/reports/criteriaDiv"); mav.addObject("criteriaList", criteriaList); mav.addObject("reportCriteriaField", rcf); return mav; }