Example usage for java.lang Exception getLocalizedMessage

List of usage examples for java.lang Exception getLocalizedMessage

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Introduction

In this page you can find the example usage for java.lang Exception getLocalizedMessage.

Prototype

public String getLocalizedMessage()

Source Link

Document

Creates a localized description of this throwable.

Usage

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetSubjectsIdListener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setSubjectsIdUI.getValues();
    Vector<String> samples = this.setSubjectsIdUI.getSamples();
    for (String v : values) {
        if (v.compareTo("") == 0) {
            this.setSubjectsIdUI.displayMessage("All identifiers have to be set");
            return;
        }/*ww  w . j  a  v  a2s  .  c  o  m*/
    }

    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
        if (stsmf == null) {
            for (int i = 0; i < samples.size(); i++) {
                out.write(this.dataType.getStudy().toString() + "\t" + "\t" + values.elementAt(i) + "\t"
                        + samples.elementAt(i) + "\t" + "\t" + "\t" + "\t" + "\t" + "\n");
            }
        } else {
            try {
                BufferedReader br = new BufferedReader(new FileReader(stsmf));
                String line = br.readLine();
                while ((line = br.readLine()) != null) {
                    String[] fields = line.split("\t", -1);
                    String sample = fields[3];
                    String subject;
                    if (samples.contains(sample)) {
                        subject = values.get(samples.indexOf(sample));
                    } else {
                        br.close();
                        return;
                    }
                    out.write(fields[0] + "\t" + fields[1] + "\t" + subject + "\t" + sample + "\t" + fields[4]
                            + "\t" + fields[5] + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
                }
                br.close();
            } catch (Exception e) {
                this.setSubjectsIdUI.displayMessage("File error: " + e.getLocalizedMessage());
                out.close();
                e.printStackTrace();
            }
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setSubjectsIdUI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setSubjectsIdUI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setSubjectsIdUI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
    UsedFilesPart.sendFilesChanged(dataType);
}

From source file:net.jmhertlein.mcanalytics.plugin.daemon.request.RequestHandler.java

@Override
public final void run() {
    JSONObject o;// w w  w  . j  ava 2s .  co  m
    try (Connection conn = ds.getConnection()) {
        //System.out.println("Handler method being called!");
        checkAuthentication();
        o = handle(conn, stmts, req, dispatcher.getClient());
        //System.out.println("Handler method returned.");
        o.put("status", "OK");
    } catch (Exception e) {
        e.printStackTrace(System.err);
        o = new JSONObject();
        o.put("status", "ERROR");
        o.put("status_msg", e.getLocalizedMessage());
    }

    o.put("response_to", getResponseID());
    //System.out.println("Queueing the response from handler.");
    dispatcher.queueResponse(o);
}

From source file:com.primeleaf.krystal.web.action.console.UpdateProfilePictureAction.java

@SuppressWarnings("rawtypes")
public WebView execute(HttpServletRequest request, HttpServletResponse response) throws Exception {
    request.setCharacterEncoding(HTTPConstants.CHARACTER_ENCODING);
    HttpSession session = request.getSession();
    User loggedInUser = (User) session.getAttribute(HTTPConstants.SESSION_KRYSTAL);
    if (request.getMethod().equalsIgnoreCase("POST")) {
        try {/*  w w w. j a  v a  2  s .com*/
            String userName = loggedInUser.getUserName();
            String sessionid = (String) session.getId();

            String tempFilePath = System.getProperty("java.io.tmpdir");

            if (!(tempFilePath.endsWith("/") || tempFilePath.endsWith("\\"))) {
                tempFilePath += System.getProperty("file.separator");
            }
            tempFilePath += userName + "_" + sessionid;

            //variables
            String fileName = "", ext = "";
            File file = null;
            // Create a factory for disk-based file items
            FileItemFactory factory = new DiskFileItemFactory();
            // Create a new file upload handler
            ServletFileUpload upload = new ServletFileUpload(factory);
            request.setCharacterEncoding(HTTPConstants.CHARACTER_ENCODING);
            upload.setHeaderEncoding(HTTPConstants.CHARACTER_ENCODING);
            List listItems = upload.parseRequest((HttpServletRequest) request);

            Iterator iter = listItems.iterator();
            FileItem fileItem = null;
            while (iter.hasNext()) {
                fileItem = (FileItem) iter.next();
                if (!fileItem.isFormField()) {
                    try {
                        fileName = fileItem.getName();
                        file = new File(fileName);
                        fileName = file.getName();
                        ext = fileName.substring(fileName.lastIndexOf(".") + 1).toUpperCase();
                        if (!"JPEG".equalsIgnoreCase(ext) && !"JPG".equalsIgnoreCase(ext)
                                && !"PNG".equalsIgnoreCase(ext)) {
                            request.setAttribute(HTTPConstants.REQUEST_ERROR,
                                    "Invalid image. Please upload JPG or PNG file");
                            return (new MyProfileAction().execute(request, response));
                        }
                        file = new File(tempFilePath + "." + ext);
                        fileItem.write(file);
                    } catch (Exception ex) {
                        session.setAttribute("UPLOAD_ERROR", ex.getLocalizedMessage());
                        return (new MyProfileAction().execute(request, response));
                    }
                }
            } //if

            if (file.length() <= 0) { //code for checking minimum size of file
                request.setAttribute(HTTPConstants.REQUEST_ERROR, "Zero length document");
                return (new MyProfileAction().execute(request, response));
            }
            if (file.length() > (1024 * 1024 * 2)) { //code for checking minimum size of file
                request.setAttribute(HTTPConstants.REQUEST_ERROR, "Image size too large. Upload upto 2MB file");
                return (new MyProfileAction().execute(request, response));
            }

            User user = loggedInUser;
            user.setProfilePicture(file);
            UserDAO.getInstance().setProfilePicture(user);

            AuditLogManager.log(new AuditLogRecord(user.getUserId(), AuditLogRecord.OBJECT_USER,
                    AuditLogRecord.ACTION_EDITED, loggedInUser.getUserName(), request.getRemoteAddr(),
                    AuditLogRecord.LEVEL_INFO, "", "Profile picture update"));
        } catch (Exception e) {
            e.printStackTrace(System.out);
        }
    }
    request.setAttribute(HTTPConstants.REQUEST_MESSAGE, "Profile picture uploaded successfully");
    return (new MyProfileAction().execute(request, response));
}

From source file:uk.ac.ebi.emma.controller.MutationManagementListController.java

/**
 * Deletes the mutations identified by <b>id</b>. This method is configured as
 * a GET because it is intended to be called as an ajax call. Using GET
 * avoids re-posting problems with the back button. NOTE: It is the caller's
 * responsibility to insure there are no foreign key constraints.
 * //from w ww  . ja  v a2  s  . c o m
 * @param mutation_key primary key of the mutation to be deleted
 * @return a JSON string containing 'status' [ok or fail], and a message [
 * empty string if status is ok; error message otherwise]
 */
@RequestMapping(value = "/deleteMutation", method = RequestMethod.GET)
@ResponseBody
public ResponseEntity<String> deleteMutation(@RequestParam int mutation_key) {
    String status, message;

    try {
        mutationsManager.delete(mutation_key);
        status = "ok";
        message = "";
    } catch (Exception e) {
        status = "fail";
        message = e.getLocalizedMessage();
    }

    JSONObject returnStatus = new JSONObject();
    returnStatus.put("status", status);
    returnStatus.put("message", message);
    HttpHeaders headers = new HttpHeaders();
    headers.add("Content-Type", "application/json; charset=utf-8");

    return new ResponseEntity(returnStatus.toJSONString(), headers, HttpStatus.OK);
}

From source file:com.github.richardwilly98.esdms.services.ParameterProvider.java

@Override
public Object getParameterValue(String name) throws ServiceException {
    checkNotNull(name);//from   www . ja  va  2  s  .  c  om
    if (name.contains(".")) {
        String id = name.substring(0, name.indexOf("."));
        String propertyName = name.substring(name.indexOf(".") + 1);
        Parameter parameter = super.get(id);
        try {
            return PropertyUtils.getProperty(parameter, propertyName);
        } catch (Exception ex) {
            log.error(String.format("getParameterValue %s failed", name), ex);
            throw new ServiceException(ex.getLocalizedMessage());
        }
    } else
        return super.get(name);
}

From source file:com.wonders.bud.freshmommy.web.user.controller.UserController.java

/**
 * <p>/*  www  .j  ava2 s  . c  om*/
 * Description:[?id?]
 * </p>
 * 
 * Created by linqin [2014-11-20]
 * Midified by [] []
 * @param request
 * @return
 */
@RequestMapping(value = "/user", method = RequestMethod.GET)
@ResponseBody
public RestMsg<UserVO> findUserById(HttpServletRequest request) {

    RestMsg<UserVO> rm = new RestMsg<UserVO>();

    String uId = request.getParameter("uId");

    try {
        if (StringUtils.isBlank(uId)) {
            rm.errorMsg("??");
            return rm;
        }
        UserPO po = userService.findUserById(Integer.valueOf(uId));
        UserVO vo = new UserVO();
        BeanUtils.copyProperties(vo, po);
        rm.setResult(vo);
        rm.successMsg();
    } catch (Exception e) {
        rm.errorMsg("??");
        log.error(e.getLocalizedMessage());
    }
    return rm;
}

From source file:uk.ac.ebi.emma.controller.GeneManagementListController.java

/**
 * Deletes the gene identified by <b>id</b>. This method is configured as
 * a GET because it is intended to be called as an ajax call. Using GET
 * avoids re-posting problems with the back button. NOTE: It is the caller's
 * responsibility to insure there are no foreign key constraints.
 * /*from   ww  w .  j av  a 2  s. c o  m*/
 * @param gene_key primary key of the gene to be deleted
 * @return a JSON string containing 'status' [ok or fail], and a message [
 * empty string if status is ok; error message otherwise]
 */
@RequestMapping(value = "/deleteGene", method = RequestMethod.GET)
@ResponseBody
public ResponseEntity<String> deleteGene(@RequestParam int gene_key) {
    String status, message;

    try {
        genesManager.delete(gene_key);
        status = "ok";
        message = "";
    } catch (Exception e) {
        status = "fail";
        message = e.getLocalizedMessage();
    }

    JSONObject returnStatus = new JSONObject();
    returnStatus.put("status", status);
    returnStatus.put("message", message);
    HttpHeaders headers = new HttpHeaders();
    headers.add("Content-Type", "application/json; charset=utf-8");

    return new ResponseEntity(returnStatus.toJSONString(), headers, HttpStatus.OK);
}

From source file:com.github.richardwilly98.esdms.services.ParameterProvider.java

@Override
public Parameter setParameterValue(Parameter parameter, String name, Object value) throws ServiceException {
    checkNotNull(parameter);//from www  . j a  v  a  2  s. co  m
    checkNotNull(name);
    try {
        PropertyUtils.setProperty(parameter, name, value);
        return update(parameter);
    } catch (Exception ex) {
        log.error(String.format("setParameterValue %s - %s failed", parameter, name), ex);
        throw new ServiceException(ex.getLocalizedMessage());
    }
}

From source file:com.vmware.demo.EditController.java

@RequestMapping(value = "/edit", method = RequestMethod.POST)
public String save(HttpServletRequest request, Locale locale, Model model, Integer id, String name,
        String horizonUrl, String metaData) {
    logger.info("Edit save " + name);
    IdentityProvider idp;/* www  .  j a  va  2 s  .c  om*/
    if (0 == id) {
        idp = new IdentityProvider();
    } else {
        idp = organizationHandler.load(id);
    }

    // Cleanup input before saving
    metaData = StringUtils.remove(metaData, '\r');
    metaData = StringUtils.remove(metaData, '\n');

    try {
        // Initialize the SAML libraries by grabbing an instance of the service
        SamlService.getInstance();

        try {
            horizonUrl = SamlUtils.validate(metaData);
        } catch (Exception e) {
            if (e instanceof SSLHandshakeException) {
                model.addAttribute(ATTRIBUTE_ERROR_MSG, e.getLocalizedMessage());
            } else {
                throw e;
            }
        }
        if (null != horizonUrl) {
            idp.setMetaData(metaData);
            idp.setHorizonUrl(horizonUrl);
            organizationHandler.save(idp);
        }
    } catch (Exception e) {
        model.addAttribute(ATTRIBUTE_ERROR_MSG, e.getLocalizedMessage());
        return "edit";
    }
    model.addAttribute("identityProviders", organizationHandler.getAllIdentityProviders());
    model.addAttribute("spMetaDataUsername",
            ListController.generateMetaData(request, "urn:oasis:names:tc:SAML:1.1:nameid-format:unspecified"));
    model.addAttribute("spMetaDataEmail",
            ListController.generateMetaData(request, "urn:oasis:names:tc:SAML:1.1:nameid-format:emailAddress"));
    return "list";
}

From source file:com.orange.mmp.mvc.actions.CertifAction.java

/**
 * ACTIONS/*from w w  w. j a va2  s  .c  o  m*/
 */

@SuppressWarnings("unchecked")
/* (non-Javadoc)
 * @see com.opensymphony.xwork2.ActionSupport#execute()
 */
@Override
public String execute() throws Exception {
    // List certificates
    try {
        Vector certs = MidletManager.getInstance().getCertificates();
        this.certifList = new ArrayList<X509Certificate>();
        if (certs.size() > 0) {
            for (int i = 0; i < certs.size(); i++) {
                Object aobj[] = (Object[]) (Object[]) certs.elementAt(i);
                X509Certificate thisCert = (X509Certificate) aobj[AppDescriptor.CERT];
                certifList.add(thisCert);
            }
        }
    } catch (Exception e) {
        addActionError(getText("error.certif.list", new String[] { e.getLocalizedMessage() }));
    }

    return super.execute();
}