Example usage for java.lang Exception getLocalizedMessage

List of usage examples for java.lang Exception getLocalizedMessage

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Introduction

In this page you can find the example usage for java.lang Exception getLocalizedMessage.

Prototype

public String getLocalizedMessage()

Source Link

Document

Creates a localized description of this throwable.

Usage

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetPlatformsListener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setPlatformsUI.getValues();
    Vector<String> samples = this.setPlatformsUI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setPlatformsUI.displayMessage("Error: no subject to sample mapping file");
    }//w  w  w  . j a  v a 2 s .com
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String platform;
                if (samples.contains(sample)) {
                    platform = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + platform
                        + "\t" + fields[5] + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.setPlatformsUI.displayMessage("Error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setPlatformsUI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setPlatformsUI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setPlatformsUI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:com.qperior.GSAOneBoxProvider.QPOneBoxProviderServletTest.java

/**
 * //from w  w  w. ja va2s. c  o  m
 */
@Test
public void testDoPostHttpServletRequestHttpServletResponse() {

    String uri = URI_SERVLET + URI_APIMAJ + URI_AMP + URI_APIMIN + URI_AMP + URI_AUTHTYPE + URI_AMP + URI_LANG
            + URI_AMP + URI_ONEBOXNAME + URI_AMP + URI_QUERY;

    try {
        String actual = this.callHttpPost(uri);
        assertEquals(null, "Method 'doPost' is not supported!", actual);
    } catch (Exception exc) {
        fail("Exception in DoPost: " + exc.getLocalizedMessage());
    }

}

From source file:cz.zcu.kiv.eeg.mobile.base.ws.asynctask.FetchReservationsToDate.java

/**
 * Method, where all reservations to specified date are read from server.
 * All heavy lifting is made here.//from www.j a  va 2  s.c o m
 *
 * @param params only one TimeContainer parameter is allowed here - specifies day, month and year
 * @return list of fetched reservations
 */
@Override
protected List<Reservation> doInBackground(TimeContainer... params) {
    SharedPreferences credentials = getCredentials();
    String username = credentials.getString("username", null);
    String password = credentials.getString("password", null);
    String url = credentials.getString("url", null) + Values.SERVICE_RESERVATION;

    if (params.length == 1) {
        TimeContainer time = params[0];
        url = url + time.getDay() + "-" + time.getMonth() + "-" + time.getYear();
    } else {
        Log.e(TAG, "Invalid params count! There must be one TimeContainer instance");
        setState(ERROR, "Invalid params count! There must be one TimeContainer instance");
        return Collections.emptyList();
    }

    setState(RUNNING, R.string.working_ws_msg);

    // Populate the HTTP Basic Authentication header with the username and
    // password
    HttpAuthentication authHeader = new HttpBasicAuthentication(username, password);
    HttpHeaders requestHeaders = new HttpHeaders();
    requestHeaders.setAuthorization(authHeader);
    requestHeaders.setAccept(Collections.singletonList(MediaType.APPLICATION_XML));

    SSLSimpleClientHttpRequestFactory factory = new SSLSimpleClientHttpRequestFactory();
    // Create a new RestTemplate instance
    RestTemplate restTemplate = new RestTemplate(factory);
    restTemplate.getMessageConverters().add(new SimpleXmlHttpMessageConverter());

    try {
        // Make the network request
        Log.d(TAG, url);
        ResponseEntity<ReservationList> response = restTemplate.exchange(url, HttpMethod.GET,
                new HttpEntity<Object>(requestHeaders), ReservationList.class);
        ReservationList body = response.getBody();

        if (body != null) {
            return body.getReservations();
        }

    } catch (Exception e) {
        Log.e(TAG, e.getLocalizedMessage(), e);
        setState(ERROR, e);
    } finally {
        setState(DONE);
    }
    return Collections.emptyList();
}

From source file:com.adito.clientcerts.ClientCertsPlugin.java

public void activatePlugin() throws ExtensionException {
    super.activatePlugin();
    try {// w  w  w .j a  v a  2 s.  com
        initTableItemActions();
        // CoreUtil.updateEventsTable(TunnelPlugin.MESSAGE_RESOURCES_KEY, TunnelsEventConstants.class);
    } catch (Exception e) {
        throw new ExtensionException(ExtensionException.INTERNAL_ERROR, e, e.getLocalizedMessage());
    }
    LOG.info("ClientCert plugin activated");
}

From source file:com.atolcd.alfresco.audit.web.scripts.UserConnectionsGet.java

/**
 * PRINCIPAL METHOD// w w w .  ja v a  2s .c  om
 * 
 */
@Override
protected Map<String, Object> executeImpl(WebScriptRequest req, Status status, Cache cache) {
    try {
        Map<String, Object> model = new HashMap<String, Object>();
        String period = req.getParameter("period");
        int paramDate = 0;

        if (req.getParameter("date") != null)
            paramDate = Integer.parseInt(req.getParameter("date"));

        GregorianCalendar calendar = DateInterval.setInterval(new Date(), period, paramDate);

        Calendar[] calendars = DateInterval.startEndPeriod(calendar, period);
        model.put("userConnections", auditQueriesService.countConnections(calendars, period).entrySet());

        return model;
    } catch (Exception e) {
        throw new WebScriptException("[UserConnectionsGet] Error in execute function " + e.getMessage() + " "
                + e.getLocalizedMessage());
    }
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetAttribute2Listener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setAttribute2UI.getValues();
    Vector<String> samples = this.setAttribute2UI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setAttribute2UI.displayMessage("Error: no subject to sample mapping file");
    }/*from  w ww.  j  a va  2s . c o  m*/
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String attribute;
                if (samples.contains(sample)) {
                    attribute = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + fields[4]
                        + "\t" + fields[5] + "\t" + fields[6] + "\t" + attribute + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.setAttribute2UI.displayMessage("File error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setAttribute2UI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setAttribute2UI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setAttribute2UI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetTissueTypeListener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setTissueTypeUI.getValues();
    Vector<String> samples = this.setTissueTypeUI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setTissueTypeUI.displayMessage("Error: no subject to sample mapping file");
    }//w  w w  .j  a  v  a  2  s .c o  m
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String tissueType;
                if (samples.contains(sample)) {
                    tissueType = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + fields[4]
                        + "\t" + tissueType + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.setTissueTypeUI.displayMessage("File error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setTissueTypeUI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setTissueTypeUI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setTissueTypeUI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:org.openxdata.server.engine.OpenXDataLoggingEngineImpl.java

/**
 * Process the HTML formatted log file./*from w w  w .  j  a  v  a 2s  .c om*/
 * 
 * @return HTML Formatted output.
 */
private Diagnosis processHTMLLogFile(String logFilePath) {

    try {
        // Read Log File
        String logFileOutput = FileUtil.readFile(logFilePath);

        // Process Contents.
        return buildDiagnosisFromHTMLFileOutput(logFileOutput);

    } catch (Exception ex) {
        log.error("Log Processing Engine: " + this.getClass() + ex.getLocalizedMessage(), ex);
    }

    return null;
}

From source file:com.almende.eve.test.TestCall.java

/**
 * Test proxy.// www . j  a  v a 2  s  . c o m
 * 
 * @throws Exception
 *             the exception
 */
@Test
public void testCall() throws Exception {
    // Create TestAgent according to TestInterface
    final AgentHost host = AgentHost.getInstance();
    final FileStateFactory stateFactory = new FileStateFactory(".eveagents");
    host.setStateFactory(stateFactory);
    host.setSchedulerFactory(new ClockSchedulerFactory(host, new HashMap<String, Object>()));
    if (host.hasAgent("TestAgent")) {
        host.deleteAgent("TestAgent");
    }
    final TestAgent agent = host.createAgent(TestAgent.class, "TestAgent");
    final AsyncCallback<JSONResponse> callback = new AsyncCallback<JSONResponse>() {

        @Override
        public void onSuccess(JSONResponse result) {
            LOG.info("received result:" + result);
        }

        @Override
        public void onFailure(Exception exception) {
            LOG.log(Level.WARNING, "Failure:", exception);
            fail("Failure:" + exception.getLocalizedMessage());
        }
    };

    agent.send(
            new JSONRequest("helloWorld", (ObjectNode) JOM.getInstance().readTree("{\"msg\":\"hi there!\"}")),
            URI.create("local:TestAgent"), callback, null);

    agent.send(
            new JSONRequest("helloWorld2",
                    (ObjectNode) JOM.getInstance().readTree("{\"msg1\":\"hi there!\",\"msg2\":\"Bye!\"}")),
            URI.create("local:TestAgent"), callback, null);

    agent.send(new JSONRequest("scheduler.getTasks", JOM.createObjectNode()), URI.create("local:TestAgent"),
            callback, null);

    agent.send(new JSONRequest("testVoid", JOM.createObjectNode()), URI.create("local:TestAgent"), callback,
            null);

    try {
        Thread.sleep(500);
    } catch (InterruptedException e) {
    }
}

From source file:com.kylinolap.job.hadoop.cube.MergeCuboidJob.java

@Override
public int run(String[] args) throws Exception {
    Options options = new Options();

    try {//  w w w.j  ava2 s  .c o m
        options.addOption(OPTION_JOB_NAME);
        options.addOption(OPTION_CUBE_NAME);
        options.addOption(OPTION_SEGMENT_NAME);
        options.addOption(OPTION_INPUT_PATH);
        options.addOption(OPTION_OUTPUT_PATH);
        parseOptions(options, args);

        String cubeName = getOptionValue(OPTION_CUBE_NAME).toUpperCase();
        String segmentName = getOptionValue(OPTION_SEGMENT_NAME).toUpperCase();
        KylinConfig config = KylinConfig.getInstanceFromEnv();
        CubeManager cubeMgr = CubeManager.getInstance(config);
        CubeInstance cube = cubeMgr.getCube(cubeName);
        // CubeSegment cubeSeg = cubeMgr.findSegment(cube, segmentName);

        // start job
        String jobName = getOptionValue(OPTION_JOB_NAME);
        System.out.println("Starting: " + jobName);
        job = Job.getInstance(getConf(), jobName);

        // set job configuration - basic
        File JarFile = new File(config.getKylinJobJarPath());
        if (JarFile.exists()) {
            job.setJar(config.getKylinJobJarPath());
        } else {
            job.setJarByClass(this.getClass());
        }

        // setJobJar(job);
        addInputDirs(getOptionValue(OPTION_INPUT_PATH), job);

        Path output = new Path(getOptionValue(OPTION_OUTPUT_PATH));
        FileOutputFormat.setOutputPath(job, output);

        // Mapper
        job.setInputFormatClass(SequenceFileInputFormat.class);
        job.setMapperClass(MergeCuboidMapper.class);
        job.setMapOutputKeyClass(Text.class);
        job.setMapOutputValueClass(Text.class);

        // Reducer - only one
        job.setReducerClass(CuboidReducer.class);
        job.setOutputFormatClass(SequenceFileOutputFormat.class);
        job.setOutputKeyClass(Text.class);
        job.setOutputValueClass(Text.class);

        // set job configuration
        job.getConfiguration().set(BatchConstants.CFG_CUBE_NAME, cubeName);
        job.getConfiguration().set(BatchConstants.CFG_CUBE_SEGMENT_NAME, segmentName);

        // add metadata to distributed cache
        attachKylinPropsAndMetadata(cube, job.getConfiguration());

        setReduceTaskNum(job, config, cubeName, 0);

        this.deletePath(job.getConfiguration(), output);

        return waitForCompletion(job);
    } catch (Exception e) {
        printUsage(options);
        log.error(e.getLocalizedMessage(), e);
        return 2;
    }
}