Example usage for java.lang Exception getLocalizedMessage

List of usage examples for java.lang Exception getLocalizedMessage

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Introduction

In this page you can find the example usage for java.lang Exception getLocalizedMessage.

Prototype

public String getLocalizedMessage()

Source Link

Document

Creates a localized description of this throwable.

Usage

From source file:fr.sanofi.fcl4transmart.controllers.listeners.snpData.SetTissueListener.java

@Override
public void handleEvent(Event event) {
    Vector<String> values = this.ui.getValues();
    Vector<String> samples = this.ui.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File mappingFile = ((SnpData) this.dataType).getMappingFile();
    if (mappingFile == null) {
        this.ui.displayMessage("Error: no subject to sample mapping file");
    }//from  w  w  w  .  ja  v a 2 s  . c  o  m
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);

        try {
            BufferedReader br = new BufferedReader(new FileReader(mappingFile));
            String line;
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String tissueType;
                if (samples.contains(sample)) {
                    tissueType = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + fields[4]
                        + "\t" + tissueType + "\t" + fields[6] + "\t" + fields[7] + "\t" + "PLATFORM+TISSUETYPE"
                        + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.ui.displayMessage("File error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (mappingFile != null) {
                String fileName = mappingFile.getName();
                mappingFile.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((SnpData) this.dataType).setMappingFile(fileDest);
        } catch (IOException ioe) {
            this.ui.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.ui.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.ui.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:cz.zcu.kiv.eeg.mobile.base.ws.asynctask.FetchExperiments.java

/**
 * Method, where all experiments are read from server.
 * All heavy lifting is made here.// ww  w  .j  ava  2s. c  o  m
 *
 * @param params not used (omitted) here
 * @return list of fetched experiments
 */
@Override
protected List<Experiment> doInBackground(Void... params) {
    SharedPreferences credentials = getCredentials();
    String username = credentials.getString("username", null);
    String password = credentials.getString("password", null);
    String url = credentials.getString("url", null) + Values.SERVICE_EXPERIMENTS;

    setState(RUNNING, R.string.working_ws_experiments);
    HttpAuthentication authHeader = new HttpBasicAuthentication(username, password);
    HttpHeaders requestHeaders = new HttpHeaders();
    requestHeaders.setAuthorization(authHeader);
    requestHeaders.setAccept(Collections.singletonList(MediaType.APPLICATION_XML));
    HttpEntity<Object> entity = new HttpEntity<Object>(requestHeaders);

    SSLSimpleClientHttpRequestFactory factory = new SSLSimpleClientHttpRequestFactory();
    // Create a new RestTemplate instance
    RestTemplate restTemplate = new RestTemplate(factory);
    restTemplate.getMessageConverters().add(new SimpleXmlHttpMessageConverter());

    try {

        //obtain all public records if qualifier is all
        if (Values.SERVICE_QUALIFIER_ALL.equals(qualifier)) {
            String countUrl = url + "count";
            ResponseEntity<RecordCount> count = restTemplate.exchange(countUrl, HttpMethod.GET, entity,
                    RecordCount.class);

            url += "public/" + count.getBody().getPublicRecords();
        } else
            url += qualifier;

        // Make the network request
        Log.d(TAG, url);
        ResponseEntity<ExperimentList> response = restTemplate.exchange(url, HttpMethod.GET, entity,
                ExperimentList.class);
        ExperimentList body = response.getBody();

        if (body != null) {
            return body.getExperiments();
        }

    } catch (Exception e) {
        Log.e(TAG, e.getLocalizedMessage(), e);
        setState(ERROR, e);
    } finally {
        setState(DONE);
    }
    return Collections.emptyList();
}

From source file:com.difference.historybook.proxy.ProxyTest.java

@Test
public void testSelector() {
    String body = "<html><head></head><body>Hello World!</body></html>";

    stubFor(get(urlEqualTo("/some/page"))
            .willReturn(aResponse().withStatus(200).withHeader("Content-Type", "text/html").withBody(body)));

    stubFor(get(urlEqualTo("/some/other/page"))
            .willReturn(aResponse().withStatus(201).withHeader("Content-Type", "text/html").withBody(body)));

    Proxy proxy = getProxy().setPort(PROXY_PORT);

    ProxyFilter filter = mock(ProxyFilter.class);
    ProxyFilterFactory factory = mock(ProxyFilterFactory.class);
    when(factory.getInstance()).thenReturn(filter);
    proxy.setFilterFactory(factory);//from   w w  w.  j av  a2  s .c o  m
    proxy.setResponseFilterSelector(t -> {
        return t.getStatus() == 200;
    });

    try {
        proxy.start();

        java.net.Proxy proxyServer = new java.net.Proxy(java.net.Proxy.Type.HTTP,
                new InetSocketAddress("127.0.0.1", PROXY_PORT));

        HttpURLConnection connection = (HttpURLConnection) new URL(
                "http://localhost:" + DUMMY_SERVER_PORT + "/some/page").openConnection(proxyServer);
        byte[] fetchedContent = IOUtils.toByteArray(connection.getInputStream());
        assertArrayEquals(body.getBytes(Charsets.UTF_8), fetchedContent);

        verify(filter).processRequest(any());
        verify(filter).processResponse(any());
        verifyNoMoreInteractions(filter);

        connection = (HttpURLConnection) new URL("http://localhost:" + DUMMY_SERVER_PORT + "/some/other/page")
                .openConnection(proxyServer);
        fetchedContent = IOUtils.toByteArray(connection.getInputStream());
        assertArrayEquals(body.getBytes(Charsets.UTF_8), fetchedContent);

        verify(filter, times(2)).processRequest(any());
        verifyNoMoreInteractions(filter);

        proxy.stop();
    } catch (Exception e) {
        fail(e.getLocalizedMessage());
    }
}

From source file:com.engineering.ses.spell.clientstubj.cmdclient.CommandClient.java

/***************************************************************************
 * Interactive loop /*from  w  w w.java2  s.  c o  m*/
 * @throws Exception 
 **************************************************************************/
private void interactiveLoop() throws Exception {
    m_stdin = new BufferedReader(new InputStreamReader(System.in));
    System.out.println();
    while (true) {
        System.out.print("> ");
        try {
            String command = m_stdin.readLine();
            if (command == null || command.trim().isEmpty())
                continue;
            m_cmdProcessor.processCommand(command);
            System.out.println();
        } catch (Exception ex) {
            if (ex.getLocalizedMessage().equals("exit"))
                break;
            System.err.println("ERROR: " + ex.getLocalizedMessage());
        }
    }
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetSiteIdListener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setSiteIdUI.getValues();
    Vector<String> samples = this.setSiteIdUI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setSiteIdUI.displayMessage("Error: no subject to sample mapping file");
    }//from  w w  w. jav  a 2  s .  com
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String site;
                if (samples.contains(sample)) {
                    site = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + site + "\t" + fields[2] + "\t" + sample + "\t" + fields[4] + "\t"
                        + fields[5] + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.setSiteIdUI.displayMessage("Error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setSiteIdUI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setSiteIdUI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setSiteIdUI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:es.urjc.mctwp.bbeans.AbstractBean.java

/**
 * It runs a command safely and catching all error info. If commands fail, 
 * it will redirect action to error page.
 * /*from   w  ww .  ja v  a2 s. c o  m*/
 * @param cmd
 * @return
 */
protected Command runCommand(Command cmd) {
    Command result = cmd;

    try {
        result = service.runCommand(cmd);
        if (result.getUserComment() != null) {
            setInfoMessage(result.getUserComment());
        }
    } catch (Exception ce) {
        setErrorMessage(ce.getLocalizedMessage());
        result = null;
    }

    return result;
}

From source file:org.ameba.aop.IntegrationLayerAspect.java

/**
 * Called after an exception is thrown by classes of the integration layer. <p> Set log level to ERROR to log the root cause. </p>
 *
 * @param ex The root exception that is thrown
 * @return Returns the exception to be thrown
 *///  ww  w  .  ja  v a2 s.  com
public Exception translateException(Exception ex) {
    if (EXC_LOGGER.isErrorEnabled()) {
        EXC_LOGGER.error(ex.getLocalizedMessage(), ex);
    }

    if (ex instanceof BusinessRuntimeException) {
        return ex;
    }

    Optional<Exception> handledException = doTranslateException(ex);
    if (handledException.isPresent()) {
        return handledException.get();
    }
    if (ex instanceof DuplicateKeyException) {
        return new ResourceExistsException();
    }
    if (ex instanceof IntegrationLayerException) {
        return ex;
    }
    return withRootCause ? new IntegrationLayerException(ex.getMessage(), ex)
            : new IntegrationLayerException(ex.getMessage());
}

From source file:com.yosanai.java.aws.console.AWSConsole.java

private void btnAccessActionPerformed(java.awt.event.ActionEvent evt) {// GEN-FIRST:event_btnAccessActionPerformed
    if (null == config) {
        showConfig(false);/*from w w  w .  j a v a2 s.c o  m*/
    }
    if (StringUtils.isBlank(config.getString(AWSConnectionProvider.AWS_KEY))) {
        showConfig(true);
    }
    try {
        awsConnectionProvider.updateEC2Config(true, config);
    } catch (Exception e) {
        JOptionPane.showMessageDialog(this, "" + e.getLocalizedMessage(),
                "Failed to initialize connection to AWS", JOptionPane.ERROR_MESSAGE);
    }
    if (null == console && null != awsConnectionProvider.getConnection()) {
        console = new MainAWSPanel();
        console.setParentFrame(this);
        console.setAwsConnectionProvider(awsConnectionProvider);
        getContentPane().add(console, BorderLayout.CENTER);
        invalidate();
        validate();
        console.init();
    }
}

From source file:com.wonders.bud.freshmommy.web.user.controller.BabyController.java

/**
 * <p>/*from   w w w. j  av a2s.  co m*/
 * Description:[?id??]
 * </p>
 * 
 * Created by linqin [2014-11-20]
 * Midified by [] []
 * @param request
 * @return
 */
@RequestMapping(value = "/babyList", method = RequestMethod.GET)
@ResponseBody
public RestMsg<List<BabyVO>> findBabiesByList(HttpServletRequest request) {

    RestMsg<List<BabyVO>> rm = new RestMsg<List<BabyVO>>();

    String uId = request.getParameter("uId");

    try {
        if (StringUtils.isBlank(uId)) {
            rm.errorMsg("?id");
            return rm;
        }
        Map<String, Object> paramMap = new HashMap<String, Object>();
        paramMap.put("uId", Integer.valueOf(uId));
        List<BabyPO> list = new ArrayList<BabyPO>();
        list = babyService.findBabiesByList(paramMap);
        List<BabyVO> babyList = new ArrayList<BabyVO>();
        if (null != list && list.size() > 0) {
            for (BabyPO baby : list) {
                BabyVO vo = new BabyVO();
                BeanUtils.copyProperties(vo, baby);
                babyList.add(vo);
            }
        }
        rm.setResult(babyList);
        rm.successMsg();
    } catch (Exception e) {
        rm.errorMsg(e.getLocalizedMessage());
        log.error(e.getLocalizedMessage());
    }
    return rm;
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetAttribute1Listener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setAttribute1UI.getValues();
    Vector<String> samples = this.setAttribute1UI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setAttribute1UI.displayMessage("Error: no subject to sample mapping file");
    }//from  w ww  .  j  av  a2s .co  m
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String attribute;
                if (samples.contains(sample)) {
                    attribute = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + fields[4]
                        + "\t" + fields[5] + "\t" + attribute + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            setAttribute1UI.displayMessage("File error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setAttribute1UI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setAttribute1UI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setAttribute1UI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}