edu.isi.mavuno.score.GetTopResults.java Source code

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/*
 * Mavuno: A Hadoop-Based Text Mining Toolkit
 * 
 * Licensed under the Apache License, Version 2.0 (the "License"); you
 * may not use this file except in compliance with the License. You may
 * obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0 
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
 * implied. See the License for the specific language governing
 * permissions and limitations under the License.
 */

package edu.isi.mavuno.score;

import java.io.IOException;
import java.util.Arrays;
import java.util.PriorityQueue;

import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.conf.Configured;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.DoubleWritable;
import org.apache.hadoop.io.LongWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.Reducer;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.input.TextInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.mapreduce.lib.output.SequenceFileOutputFormat;
import org.apache.hadoop.mapreduce.lib.output.TextOutputFormat;
import org.apache.hadoop.util.Tool;
import org.apache.hadoop.util.ToolRunner;
import org.apache.log4j.Logger;

import edu.isi.mavuno.util.ContextPatternWritable;
import edu.isi.mavuno.util.ContextPatternWritableScorePair;
import edu.isi.mavuno.util.MavunoUtils;

/**
 * @author metzler
 *
 */
public class GetTopResults extends Configured implements Tool {

    private static final Logger sLogger = Logger.getLogger(GetTopResults.class);

    public GetTopResults(Configuration conf) throws IOException {
        super(conf);
    }

    private static class MyMapper extends Mapper<LongWritable, Text, ContextPatternWritable, DoubleWritable> {

        private final ContextPatternWritable mContext = new ContextPatternWritable();
        private final DoubleWritable mScore = new DoubleWritable();

        @Override
        public void map(LongWritable key, Text value,
                Mapper<LongWritable, Text, ContextPatternWritable, DoubleWritable>.Context context)
                throws IOException, InterruptedException {
            String[] cols = value.toString().split("\t");

            mContext.setId(cols[ContextPatternWritable.ID_FIELD]);
            mContext.setContext(cols[ContextPatternWritable.CONTEXT_FIELD]);
            mContext.setPattern(cols[ContextPatternWritable.PATTERN_FIELD]);

            mScore.set(Double.parseDouble(cols[ContextPatternWritable.TOTAL_FIELDS]));

            context.write(mContext, mScore);
        }
    }

    private static class MyReducer
            extends Reducer<ContextPatternWritable, DoubleWritable, ContextPatternWritable, DoubleWritable> {

        // number of results to return per id
        private int mNumResults;

        // priority queue to hold sorted results
        private final PriorityQueue<ContextPatternWritableScorePair> mTopResults = new PriorityQueue<ContextPatternWritableScorePair>();

        // current id
        private final Text mCurId = new Text();

        @Override
        public void setup(
                Reducer<ContextPatternWritable, DoubleWritable, ContextPatternWritable, DoubleWritable>.Context context)
                throws IOException, InterruptedException {
            Configuration conf = context.getConfiguration();
            try {
                // get maximum number of results requested
                mNumResults = Integer.parseInt(conf.get("Mavuno.GetTopResults.NumResults"));
            } catch (Exception e) {
                throw new RuntimeException(e);
            }
        }

        @Override
        public void reduce(ContextPatternWritable key, Iterable<DoubleWritable> values,
                Reducer<ContextPatternWritable, DoubleWritable, ContextPatternWritable, DoubleWritable>.Context context)
                throws IOException, InterruptedException {

            Text id = key.getId();

            if (!id.equals(mCurId)) {
                if (mCurId.getLength() > 0) {
                    outputResults(context);
                }

                mTopResults.clear();
                mCurId.set(id);
            }

            double totalScore = 0.0;
            for (DoubleWritable value : values) {
                totalScore += value.get();
            }

            if (mTopResults.size() == mNumResults) {
                ContextPatternWritableScorePair pair = mTopResults.peek();
                if (pair.score.get() < totalScore) {
                    pair = mTopResults.poll();
                    pair.contextpattern.set(key);
                    pair.score.set(totalScore);
                    mTopResults.add(pair);
                }
            } else {
                mTopResults.add(new ContextPatternWritableScorePair(key, totalScore));
            }
        }

        @Override
        public void cleanup(
                Reducer<ContextPatternWritable, DoubleWritable, ContextPatternWritable, DoubleWritable>.Context context)
                throws IOException, InterruptedException {
            if (mCurId.getLength() > 0) {
                outputResults(context);
            }
        }

        private void outputResults(
                Reducer<ContextPatternWritable, DoubleWritable, ContextPatternWritable, DoubleWritable>.Context context)
                throws IOException, InterruptedException {
            Object[] results = mTopResults.toArray();
            Arrays.sort(results);
            for (int i = results.length - 1; i >= 0; i--) {
                ContextPatternWritableScorePair result = (ContextPatternWritableScorePair) results[i];
                context.write(result.contextpattern, result.score);
            }
        }
    }

    /* (non-Javadoc)
     * @see org.apache.hadoop.util.Tool#run(java.lang.String[])
     */
    @Override
    public int run(String[] args) throws ClassNotFoundException, InterruptedException, IOException {
        MavunoUtils.readParameters(args, "Mavuno.GetTopResults", getConf());
        return run();
    }

    public int run() throws ClassNotFoundException, InterruptedException, IOException {
        Configuration conf = getConf();

        String inputPath = MavunoUtils.getRequiredParam("Mavuno.GetTopResults.InputPath", conf);
        String outputPath = MavunoUtils.getRequiredParam("Mavuno.GetTopResults.OutputPath", conf);
        int numResults = Integer.parseInt(MavunoUtils.getRequiredParam("Mavuno.GetTopResults.NumResults", conf));
        boolean sequenceFileOutputFormat = conf.getBoolean("Mavuno.GetTopResults.SequenceFileOutputFormat", false);

        sLogger.info("Tool name: GetTopResults");
        sLogger.info(" - Input path: " + inputPath);
        sLogger.info(" - Number of results: " + numResults);
        sLogger.info(" - Output path: " + outputPath);

        Job job = new Job(conf);
        job.setJobName("GetTopResults");

        FileInputFormat.addInputPath(job, new Path(inputPath));
        FileOutputFormat.setOutputPath(job, new Path(outputPath));

        job.setInputFormatClass(TextInputFormat.class);
        job.setSortComparatorClass(ContextPatternWritable.Comparator.class);
        job.setPartitionerClass(ContextPatternWritable.IdPartitioner.class);

        if (sequenceFileOutputFormat) {
            job.setOutputFormatClass(SequenceFileOutputFormat.class);
        } else {
            job.setOutputFormatClass(TextOutputFormat.class);
        }

        job.setMapOutputKeyClass(ContextPatternWritable.class);
        job.setMapOutputValueClass(DoubleWritable.class);

        job.setOutputKeyClass(ContextPatternWritable.class);
        job.setOutputValueClass(DoubleWritable.class);

        job.setMapperClass(MyMapper.class);
        job.setReducerClass(MyReducer.class);

        job.waitForCompletion(true);

        return 0;
    }

    /**
     * @param args
     * @throws Exception 
     */
    public static void main(String[] args) throws Exception {
        Configuration conf = new Configuration();
        int res = ToolRunner.run(new GetTopResults(conf), args);
        System.exit(res);
    }

}