Example usage for org.hibernate SQLQuery setFirstResult

Introduction

In this page you can find the example usage for org.hibernate SQLQuery setFirstResult.

Prototype

@Override
    Query<R> setFirstResult(int startPosition);

Source Link

Usage

From source file:org.generationcp.middleware.dao.gdms.MarkerDAO.java

License:Open Source License

/**
 * Gets the all db accession ids./*from  w  w  w  .  j  a v a 2 s.  c  o m*/
 *
 * @param start     the start
 * @param numOfRows the num of rows
 * @return all non-empty db accession ids
 * @
 */
public List<String> getAllDbAccessionIds(final int start, final int numOfRows) {
    try {
        final SQLQuery query = this.getSession().createSQLQuery(MarkerDAO.GET_ALL_DB_ACCESSION_IDS);
        query.setFirstResult(start);
        query.setMaxResults(numOfRows);
        return query.list();
    } catch (final HibernateException e) {
        LOG.error(e.getMessage(), e);
        throw new MiddlewareQueryException(
                "Error with getAllDbAccessionIds() query from Marker: " + e.getMessage(), e);
    }
}

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From source file:org.generationcp.middleware.dao.gdms.MarkerDAO.java

License:Open Source License

public List<Marker> getMarkersByIds(final List<Integer> markerIds, final int start, final int numOfRows) {
    if (markerIds == null || markerIds.isEmpty()) {
        return new ArrayList<>();
    }/*from  w ww  . j  a v a  2  s.co  m*/

    try {
        final SQLQuery query = this.getSession().createSQLQuery(MarkerDAO.GET_MARKERS_BY_IDS);
        query.setParameterList("markerIdList", markerIds);
        query.setFirstResult(start);
        query.setMaxResults(numOfRows);
        final List results = query.list();

        final List<Marker> dataValues = new ArrayList<>();
        for (final Object o : results) {
            final Object[] result = (Object[]) o;
            if (result != null) {
                dataValues.add(this.convertToMarker(result));
            }
        }
        return dataValues;
    } catch (final HibernateException e) {
        LOG.error(e.getMessage(), e);
        throw new MiddlewareQueryException("Error with getMarkersByIds() query from Marker: " + e.getMessage(),
                e);
    }
}

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From source file:org.generationcp.middleware.dao.gdms.MarkerDAO.java

License:Open Source License

public Set<Integer> getMarkerIDsByMapIDAndLinkageBetweenStartPosition(final int mapID,
        final String linkageGroup, final double startPos, final double endPos, final int start,
        final int numOfRows) {
    try {//w  ww .jav  a 2s .c  o m

        final SQLQuery query;

        query = this.getSession()
                .createSQLQuery(MarkerDAO.GET_MARKER_IDS_BY_MAP_ID_AND_LINKAGE_BETWEEN_START_POSITION);
        query.setParameter("mapId", mapID);
        query.setParameter("linkageGroup", linkageGroup);
        query.setParameter("startPosition", startPos);
        query.setParameter("endPosition", endPos);
        query.setFirstResult(start);
        query.setMaxResults(numOfRows);
        final Set<Integer> markerIDSet = new TreeSet<>(query.list());

        return markerIDSet;

    } catch (final HibernateException e) {
        LOG.error(e.getMessage(), e);
        throw new MiddlewareQueryException("Error with getMarkerIdsByMapIDAndLinkageBetweenStartPosition(mapID="
                + mapID + ", linkageGroup=" + linkageGroup + ", start=" + start + ", numOfRows=" + numOfRows
                + ") query from MarkerOnMap: " + e.getMessage(), e);
    }
}

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From source file:org.generationcp.middleware.dao.gdms.MarkerInfoDAO.java

License:Open Source License

/**
 * Gets the list of marker info objects corresponding to the given marker name.
 *
 * @param markerName the marker name//w  w w  .ja  va2s .c o  m
 * @param start the start row
 * @param numOfRows the number of rows to retrieve
 * @return the list of MarkerInfo objects by marker name
 * @throws MiddlewareQueryException
 */
@SuppressWarnings("rawtypes")
public List<MarkerInfo> getByMarkerName(String markerName, int start, int numOfRows)
        throws MiddlewareQueryException {

    if (markerName == null) {
        return new ArrayList<MarkerInfo>();
    }

    try {
        SQLQuery query = this.getSession().createSQLQuery(MarkerInfoDAO.GET_BY_MARKER_NAME);
        query.setParameter("markerName", markerName);
        query.setFirstResult(start);
        query.setMaxResults(numOfRows);
        List results = query.list();

        ArrayList<MarkerInfo> toReturn = new ArrayList<MarkerInfo>();
        for (Object o : results) {
            Object[] result = (Object[]) o;
            if (result != null) {
                toReturn.add(this.convertFromObject(result));
            }
        }
        return toReturn;

    } catch (HibernateException e) {
        this.logAndThrowException("Error with getByMarkerName(markerName=" + markerName
                + ") query from MarkerInfo: " + e.getMessage(), e);
    }
    return new ArrayList<MarkerInfo>();
}

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From source file:org.generationcp.middleware.dao.gdms.MarkerInfoDAO.java

License:Open Source License

/**
 * Gets the list of marker info objects corresponding to the given genotype.
 *
 * @param genotype the genotype//from  w w w .j ava 2s  .c o m
 * @param start the start row
 * @param numOfRows the number of rows to retrieve
 * @return the list of MarkerInfo objects by genotype
 * @throws MiddlewareQueryException
 */
@SuppressWarnings("rawtypes")
public List<MarkerInfo> getByGenotype(String genotype, int start, int numOfRows)
        throws MiddlewareQueryException {

    if (genotype == null) {
        return new ArrayList<MarkerInfo>();
    }

    try {
        SQLQuery query = this.getSession().createSQLQuery(MarkerInfoDAO.GET_BY_GENOTYPE);
        query.setParameter("genotype", genotype);
        query.setFirstResult(start);
        query.setMaxResults(numOfRows);
        List results = query.list();

        ArrayList<MarkerInfo> toReturn = new ArrayList<MarkerInfo>();
        for (Object o : results) {
            Object[] result = (Object[]) o;
            if (result != null) {
                Integer markerId = (Integer) result[0];
                String markerType = (String) result[1];
                String markerName = (String) result[2];
                String species = (String) result[3];
                String accessionId = (String) result[4];
                String reference = (String) result[5];
                String genotype2 = (String) result[6];
                String ploidy = (String) result[7];
                String motif = (String) result[8];
                String forwardPrimer = (String) result[9];
                String reversePrimer = (String) result[10];
                String productSize = (String) result[11];
                Float annealingTemp = (Float) result[12];
                String amplification = (String) result[13];
                String principalInvestigator = (String) result[14];
                String contact = (String) result[15];
                String institute = (String) result[16];
                BigInteger genotypesCount = (BigInteger) result[17];
                MarkerInfo markerInfo = new MarkerInfo(markerId, markerType, markerName, species, accessionId,
                        reference, genotype2, ploidy, motif, forwardPrimer, reversePrimer, productSize,
                        annealingTemp, amplification, principalInvestigator, contact, institute,
                        genotypesCount);
                toReturn.add(markerInfo);
            }
        }
        return toReturn;
    } catch (HibernateException e) {
        this.logAndThrowException(
                "Error with getByGenotype(genotype=" + genotype + ") query from MarkerInfo: " + e.getMessage(),
                e);
    }
    return new ArrayList<MarkerInfo>();
}

---

From source file:org.generationcp.middleware.dao.gdms.MarkerInfoDAO.java

License:Open Source License

/**
 * Gets the list of marker info objects corresponding to the given db accession id.
 *
 * @param dbAccessionId the db accession id
 * @param start the start row/*  www.  j  av a2  s .  c o m*/
 * @param numOfRows the number of rows to retrieve
 * @return the list of MarkerInfo objects by db accession id
 * @throws MiddlewareQueryException
 */
@SuppressWarnings("rawtypes")
public List<MarkerInfo> getByDbAccessionId(String dbAccessionId, int start, int numOfRows)
        throws MiddlewareQueryException {

    if (dbAccessionId == null) {
        return new ArrayList<MarkerInfo>();
    }

    try {
        SQLQuery query = this.getSession().createSQLQuery(MarkerInfoDAO.GET_BY_DB_ACCESSION_ID);
        query.setParameter("dbAccessionId", dbAccessionId);
        query.setFirstResult(start);
        query.setMaxResults(numOfRows);
        List results = query.list();

        ArrayList<MarkerInfo> toReturn = new ArrayList<MarkerInfo>();
        for (Object o : results) {
            Object[] result = (Object[]) o;
            if (result != null) {
                Integer markerId = (Integer) result[0];
                String markerType = (String) result[1];
                String markerName = (String) result[2];
                String species = (String) result[3];
                String accessionId = (String) result[4];
                String reference = (String) result[5];
                String genotype = (String) result[6];
                String ploidy = (String) result[7];
                String motif = (String) result[8];
                String forwardPrimer = (String) result[9];
                String reversePrimer = (String) result[10];
                String productSize = (String) result[11];
                Float annealingTemp = (Float) result[12];
                String amplification = (String) result[13];
                String principalInvestigator = (String) result[14];
                String contact = (String) result[15];
                String institute = (String) result[16];
                BigInteger genotypesCount = (BigInteger) result[17];
                MarkerInfo markerInfo = new MarkerInfo(markerId, markerType, markerName, species, accessionId,
                        reference, genotype, ploidy, motif, forwardPrimer, reversePrimer, productSize,
                        annealingTemp, amplification, principalInvestigator, contact, institute,
                        genotypesCount);
                toReturn.add(markerInfo);
            }
        }
        return toReturn;
    } catch (HibernateException e) {
        this.logAndThrowException("Error with getByDbAccessionId(dbAccessionId=" + dbAccessionId
                + ") query from MarkerInfo: " + e.getMessage(), e);
    }
    return new ArrayList<MarkerInfo>();
}

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From source file:org.generationcp.middleware.dao.gdms.MarkerMetadataSetDAO.java

License:Open Source License

@SuppressWarnings("unchecked")
public List<Integer> getMarkersBySampleIdAndDatasetIds(final Integer sampleId, final List<Integer> datasetIds,
        final int start, final int numOfRows) throws MiddlewareQueryException {
    List<Integer> markerIds = new ArrayList<Integer>();

    try {//from  w w  w.j a v a2s. c o m
        if (sampleId != null && datasetIds != null) {
            SQLQuery query = this.getSession()
                    .createSQLQuery(MarkerMetadataSetDAO.GET_MARKERS_BY_SAMPLEID_AND_DATASETS);
            query.setParameterList("datasetids", datasetIds);
            query.setParameter("sampleId", sampleId);
            query.setFirstResult(start);
            query.setMaxResults(numOfRows);

            markerIds = query.list();
        } else {
            return new ArrayList<Integer>();
        }
    } catch (HibernateException e) {
        this.logAndThrowException("Error with getMarkersBySampleIdAndDatasetIds(sampleID=" + sampleId
                + ", datasetIds=" + datasetIds + ") query from MarkerMetadataSet: " + e.getMessage(), e);
    }
    return markerIds;
}

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From source file:org.generationcp.middleware.dao.gdms.QtlDAO.java

License:Open Source License

@SuppressWarnings("unchecked")
public List<Integer> getQtlIdByName(String name, int start, int numOfRows) throws MiddlewareQueryException {
    try {//  ww  w  .  j a  v  a2s. co m
        SQLQuery query = this.getSession().createSQLQuery(QtlDAO.GET_QTL_ID_BY_NAME);
        query.setParameter("qtlName", name);
        query.setFirstResult(start);
        query.setMaxResults(numOfRows);
        return query.list();
    } catch (HibernateException e) {
        this.logAndThrowException(
                "Error with getQtlIdByName(name=" + name + ") query from gdms_qtl: " + e.getMessage(), e);
    }
    return new ArrayList<Integer>();
}

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From source file:org.generationcp.middleware.dao.gdms.QtlDAO.java

License:Open Source License

public List<QtlDetailElement> getQtlAndQtlDetailsByQtlIds(List<Integer> qtlIDs, int start, int numOfRows)
        throws MiddlewareQueryException {
    List<QtlDetailElement> toReturn = new ArrayList<QtlDetailElement>();

    try {// w  w w. j av  a2 s .  c  om
        if (qtlIDs != null && !qtlIDs.isEmpty()) {
            SQLQuery query = this.getSession().createSQLQuery(QtlDAO.GET_QTL_AND_QTL_DETAILS_BY_QTL_IDS);
            query.setParameterList("qtl_id_list", qtlIDs);
            query.setFirstResult(start);
            query.setMaxResults(numOfRows);

            toReturn = this.getQtlAndQtlDetails(query);
        }
    } catch (HibernateException e) {
        this.logAndThrowException("Error with getQtlAndQtlDetailsByQtlIds(qtl ids=" + qtlIDs
                + ") query from gdms_qtl_details: " + e.getMessage(), e);
    }
    return toReturn;
}

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From source file:org.generationcp.middleware.dao.gdms.QtlDAO.java

License:Open Source License

public List<QtlDetailElement> getQtlAndQtlDetailsByName(String name, int start, int numOfRows)
        throws MiddlewareQueryException {
    List<QtlDetailElement> toReturn = new ArrayList<QtlDetailElement>();

    try {/*  ww w.  ja  v a2s.c om*/
        SQLQuery query = this.getSession().createSQLQuery(QtlDAO.GET_QTL_AND_QTL_DETAILS_BY_NAME);
        query.setParameter("qtlName", name);
        query.setFirstResult(start);
        query.setMaxResults(numOfRows);

        toReturn = this.getQtlAndQtlDetails(query);
    } catch (HibernateException e) {
        this.logAndThrowException("Error with getQtlDetailsByName(name=" + name
                + ") query from gdms_qtl_details: " + e.getMessage(), e);
    }
    return toReturn;
}

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