List of usage examples for javax.xml.datatype DatatypeConstants EQUAL
int EQUAL
To view the source code for javax.xml.datatype DatatypeConstants EQUAL.
Click Source Link
Comparison result.
From source file:DatatypeAPIUsage.java
public static void main(String[] args) { try {/*from w ww . j av a2 s . c om*/ DatatypeFactory df = DatatypeFactory.newInstance(); // my work number in milliseconds: Duration myPhone = df.newDuration(9054133519l); Duration myLife = df.newDuration(true, 29, 2, 15, 13, 45, 0); int compareVal = myPhone.compare(myLife); switch (compareVal) { case DatatypeConstants.LESSER: System.out.println("There are fewer milliseconds in my phone number than my lifespan."); break; case DatatypeConstants.EQUAL: System.out.println("The same number of milliseconds are in my phone number and my lifespan."); break; case DatatypeConstants.GREATER: System.out.println("There are more milliseconds in my phone number than my lifespan."); break; case DatatypeConstants.INDETERMINATE: System.out.println("The comparison could not be carried out."); } // create a yearMonthDuration Duration ymDuration = df.newDurationYearMonth("P12Y10M"); System.out.println("P12Y10M is of type: " + ymDuration.getXMLSchemaType()); // create a dayTimeDuration (really this time) Duration dtDuration = df.newDurationDayTime("P10DT10H12M0S"); System.out.println("P10DT10H12M0S is of type: " + dtDuration.getXMLSchemaType()); // try to fool the factory! try { ymDuration = df.newDurationYearMonth("P12Y10M1D"); } catch (IllegalArgumentException e) { System.out.println("'duration': P12Y10M1D is not 'yearMonthDuration'!!!"); } XMLGregorianCalendar xgc = df.newXMLGregorianCalendar(); xgc.setYear(1975); xgc.setMonth(DatatypeConstants.AUGUST); xgc.setDay(11); xgc.setHour(6); xgc.setMinute(44); xgc.setSecond(0); xgc.setMillisecond(0); xgc.setTimezone(5); xgc.add(myPhone); System.out.println("The approximate end of the number of milliseconds in my phone number was " + xgc); // adding a duration to XMLGregorianCalendar xgc.add(myLife); System.out.println("Adding the duration myLife to the above calendar:" + xgc); // create a new XMLGregorianCalendar using the string format of xgc. XMLGregorianCalendar xgcCopy = df.newXMLGregorianCalendar(xgc.toXMLFormat()); // should be equal-if not what happened!! if (xgcCopy.compare(xgc) != DatatypeConstants.EQUAL) { System.out.println("oooops!"); } else { System.out.println("Very good: " + xgc + " is equal to " + xgcCopy); } } catch (DatatypeConfigurationException dce) { System.err.println("error: Datatype error occurred - " + dce.getMessage()); dce.printStackTrace(System.err); } }
From source file:edu.harvard.i2b2.analysis.dataModel.TimelineFactory.java
public static String generateTimelineData(String result, ArrayList<TimelineRow> rows, boolean writeFile, boolean displayAll, boolean displayDemographics) { try {/*from w ww.j a v a 2 s .c o m*/ PDOResponseMessageModel pdoresponsefactory = new PDOResponseMessageModel(); StatusType statusType = pdoresponsefactory.getStatusFromResponseXML(result); if (!statusType.getType().equalsIgnoreCase("DONE")) { return "error"; } StringBuilder resultFile = new StringBuilder(); resultFile.append(GetTimelineHeader()); PatientSet patientDimensionSet = pdoresponsefactory.getPatientSetFromResponseXML(result); if (patientDimensionSet != null) { log.debug("Total patient: " + patientDimensionSet.getPatient().size()); // for(int i=0; // i<patientDimensionSet.getPatientDimension().size();i++) { // PatientDimensionType patientType = // patientDimensionSet.getPatientDimension().get(i); // System.out.println("PatientNum: " + // patientType.getPatientNum()); // } } else { return "error"; } // / testing the visit set // PatientDataType.VisitDimensionSet visitSet = // pdoresponsefactory.getVisitSetFromResponseXML(result); // System.out.println("Total visits: "+visitSet.getVisitDimension(). // size()); List<ObservationSet> factSets = pdoresponsefactory.getFactSetsFromResponseXML(result); log.debug("\nGenerate lld:"); for (int i = 0; i < patientDimensionSet.getPatient().size(); i++) { PatientType patientType = patientDimensionSet.getPatient().get(i); String pnum = patientType.getPatientId().getValue(); // Integer pnum = new Integer(snum); // log.debug("PatientNum: " + snum); if (displayDemographics) { resultFile.append(getTimelinePatientString(pnum.toString(), patientType)); } else { resultFile.append(getTimelinePatientString(pnum.toString())); } String path = null; TimelineRow currentRow = null; ObservationSet observationFactSet = null; for (int j = 0; j < rows.size(); j++) { TimelineRow row = rows.get(j); int total = 0; StringBuilder resultString = new StringBuilder(); // loop thru all the pdo sets for this row here for (int s = 0; s < row.pdoItems.size(); s++) { PDOItem pset = row.pdoItems.get(s); observationFactSet = null; for (int m = 0; m < factSets.size(); m++) { ObservationSet tmpFactSet = factSets.get(m); if (tmpFactSet.getPanelName().equalsIgnoreCase(pset.fullPath)) { observationFactSet = tmpFactSet; path = observationFactSet.getPanelName(); currentRow = row; break; } } if (observationFactSet == null) { continue; } XMLGregorianCalendar curStartDate = null; for (int k = 0; k < observationFactSet.getObservation().size(); k++) { ObservationType obsFactType = observationFactSet.getObservation().get(k); if (pnum.equals(obsFactType.getPatientId().getValue())) { /* if ((curStartDate != null) && (obsFactType.getStartDate().compare( curStartDate) == DatatypeConstants.EQUAL)) { continue; } */ String sStart_date = obsFactType.getStartDate().getMonth() + "-" + obsFactType.getStartDate().getDay() + "-" + obsFactType.getStartDate().getYear() + " 12:00"; String sEnd_date; if (obsFactType.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = obsFactType.getEndDate().getMonth() + "-" + obsFactType.getEndDate().getDay() + "-" + obsFactType.getEndDate().getYear() + " 12:00"; } double nval = -1; if (obsFactType.getNvalNum().getValue() != null) { nval = obsFactType.getNvalNum().getValue().doubleValue(); } PDOValueData valdp = null; if (pset.hasValueDisplayProperty) { for (int n = 0; n < pset.valDisplayProperties.size(); n++) { PDOValueData tmpvaldp = pset.valDisplayProperties.get(n); // if (tmpvaldp.inRange(nval)) { valdp = tmpvaldp; // break; // } } String sValue = getSValue(row.displayName, obsFactType, true); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, "slateblue", valdp.height, sValue)); } else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, valdp.color, valdp.height, sValue)); } } else { String sValue = getSValue(row.displayName, obsFactType, false); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, "slateblue", pset.height, sValue)); } else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); } } total++; curStartDate = obsFactType.getStartDate(); } } } if (total > 0) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, total)); // log.debug(resultString.toString()); resultFile.append(resultString); } else { // display all if (displayAll) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, 1)); // log.debug(getTimelineEmptyDateString()); resultFile.append(getTimelineEmptyDateString()); } } } } resultFile.append(GetTimelineFooter()); if (writeFile) { String i2b2File = System.getProperty("user.dir") + "/temp/" + "i2b2xml.lld"; File oDelete = new File(i2b2File); if (oDelete != null) oDelete.delete(); RandomAccessFile f = new RandomAccessFile(i2b2File, "rw"); append(f, resultFile.toString()); f.close(); } // log.debug("\nThe lld file: \n"+resultFile.toString()); return resultFile.toString(); } catch (org.apache.axis2.AxisFault e) { e.printStackTrace(); log.error(e.getMessage()); return null; } catch (Exception e) { log.error(e.getMessage()); e.printStackTrace(); return "error"; } }
From source file:com.evolveum.midpoint.util.MiscUtil.java
public static boolean isBetween(XMLGregorianCalendar date, XMLGregorianCalendar start, XMLGregorianCalendar end) { return (date.compare(start) == DatatypeConstants.GREATER || date.compare(start) == DatatypeConstants.EQUAL) && (date.compare(end) == DatatypeConstants.LESSER || date.compare(end) == DatatypeConstants.EQUAL); }
From source file:edu.harvard.i2b2.explorer.dataModel.TimelineFactory.java
@SuppressWarnings("unchecked") public String generateTimelineData(String result, ArrayList<TimelineRow> rows, boolean writeFile, boolean displayAll, boolean displayDemographics, final MainComposite explorer) { try {/*from w w w .j av a 2 s.co m*/ PDOResponseMessageModel pdoresponsefactory = new PDOResponseMessageModel(); StatusType statusType = pdoresponsefactory.getStatusFromResponseXML(result); if (!statusType.getType().equalsIgnoreCase("DONE")) { return "error"; } JAXBUtil jaxbUtil = ExplorerJAXBUtil.getJAXBUtil(); JAXBElement jaxbElement = jaxbUtil.unMashallFromString(result); ResponseMessageType messageType = (ResponseMessageType) jaxbElement.getValue(); BodyType bodyType = messageType.getMessageBody(); PatientDataResponseType responseType = (PatientDataResponseType) new JAXBUnWrapHelper() .getObjectByClass(bodyType.getAny(), PatientDataResponseType.class); PageType pageType = responseType.getPage(); if (pageType != null) { final int returnLastIndex = pageType.getPagingByPatients().getPatientsReturned().getLastIndex() .intValue(); final int returnFirstIndex = pageType.getPagingByPatients().getPatientsReturned().getFirstIndex() .intValue(); final int requestLastIndex = pageType.getPagingByPatients().getPatientsRequested().getLastIndex() .intValue(); if (returnLastIndex < requestLastIndex) { // System.out.println("Can't return all the requested "+ // requestIndex+" patients, only "+returnIndex+" patients returned"); explorer.getDisplay().syncExec(new Runnable() { public void run() { // MessageBox mBox = new MessageBox(explorer // .getShell(), SWT.ICON_INFORMATION // | SWT.OK ); // mBox.setText("Please Note ..."); // mBox.setMessage("Only "+(returnLastIndex-returnFirstIndex+1)+" patients returned"); // mBox.open(); if (explorer.runMode() >= 0) { explorer.setIncrementNumber(returnLastIndex - returnFirstIndex + 1); } else if (explorer.runMode() == -1) { explorer.setDecreaseNumber(returnLastIndex - returnFirstIndex + 1); } } }); explorer.returnedNumber(returnLastIndex - returnFirstIndex + 1); } else { explorer.returnedNumber(-1); } } else { explorer.getDisplay().syncExec(new Runnable() { public void run() { // MessageBox mBox = new MessageBox(explorer // .getShell(), SWT.ICON_INFORMATION // | SWT.OK ); // mBox.setText("Please Note ..."); // mBox.setMessage("Only "+(returnLastIndex-returnFirstIndex+1)+" patients returned"); // mBox.open(); if (explorer.runMode() >= 0) { explorer.setIncrementNumber(-1); } else if (explorer.runMode() == -1) { explorer.setDecreaseNumber(-1); } } }); } StringBuilder resultFile = new StringBuilder(); resultFile.append(GetTimelineHeader()); PatientSet patientDimensionSet = pdoresponsefactory.getPatientSetFromResponseXML(result); if (patientDimensionSet != null) { log.debug("Total patient: " + patientDimensionSet.getPatient().size()); // for(int i=0; // i<patientDimensionSet.getPatientDimension().size();i++) { // PatientDimensionType patientType = // patientDimensionSet.getPatientDimension().get(i); // System.out.println("PatientNum: " + // patientType.getPatientNum()); // } } else { return "error"; } // / testing the visit set // PatientDataType.VisitDimensionSet visitSet = // pdoresponsefactory.getVisitSetFromResponseXML(result); // System.out.println("Total visits: "+visitSet.getVisitDimension(). // size()); List<ObservationSet> factSets = pdoresponsefactory.getFactSetsFromResponseXML(result); log.debug("\nGenerate lld:"); String curPNum = "-1"; for (int i = 0; i < patientDimensionSet.getPatient().size(); i++) { PatientType patientType = patientDimensionSet.getPatient().get(i); String pnum = patientType.getPatientId().getValue(); // Integer pnum = new Integer(snum); // log.debug("PatientNum: " + snum); //if(curPNum.equals("-1")) { curPNum = new String(pnum); //} if (displayDemographics) { resultFile.append(getTimelinePatientString(pnum.toString(), patientType)); } else { resultFile.append(getTimelinePatientString(pnum.toString())); } String path = null; TimelineRow currentRow = null; ObservationSet observationFactSet = null; for (int j = 0; j < rows.size(); j++) { TimelineRow row = rows.get(j); int total = 0; StringBuilder resultString = new StringBuilder(); XMLGregorianCalendar curStartDate = null; //int currentInstanceNum = 0; //String currentConcept = ""; ArrayList<ObservationType> facts = new ArrayList<ObservationType>(); ObservationType curFact = null; boolean recorded = false; String sStart_date = null; String sEnd_date = null; // loop thru all the pdo sets for this row here for (int s = 0; s < row.pdoItems.size(); s++) { PDOItem pset = row.pdoItems.get(s); observationFactSet = null; for (int m = 0; m < factSets.size(); m++) { ObservationSet tmpFactSet = factSets.get(m); if (tmpFactSet.getPanelName().equalsIgnoreCase(pset.panelName())) { observationFactSet = tmpFactSet; path = observationFactSet.getPanelName(); currentRow = row; break; } } if (observationFactSet == null) { continue; } for (int k = 0; k < observationFactSet.getObservation().size(); k++) { ObservationType obsFactType = observationFactSet.getObservation().get(k); //if(curFact == null) { //curFact = obsFactType; //} //facts.add(obsFactType); if (pnum.equals(obsFactType.getPatientId().getValue())) { /* * if ((curStartDate != null) && * (obsFactType.getStartDate().compare( * curStartDate) == DatatypeConstants.EQUAL)) { * continue; } */ if (curFact == null) { curFact = obsFactType; } if (curStartDate == null) { curStartDate = obsFactType.getStartDate(); } sStart_date = obsFactType.getStartDate().getMonth() + "-" + obsFactType.getStartDate().getDay() + "-" + obsFactType.getStartDate().getYear(); if (obsFactType.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = obsFactType.getEndDate().getMonth() + "-" + obsFactType.getEndDate().getDay() + "-" + obsFactType.getEndDate().getYear(); } double nval = -1; if (obsFactType.getNvalNum().getValue() != null) { nval = obsFactType.getNvalNum().getValue().doubleValue(); } PDOValueModel valdp = null; boolean same = sameInstance(curFact, obsFactType); if (false) {//pset.hasValueDisplayProperty) { for (int n = 0; n < pset.valDisplayProperties.size(); n++) { PDOValueModel tmpvaldp = pset.valDisplayProperties.get(n); // if (tmpvaldp.inRange(nval)) { valdp = tmpvaldp; // break; // } } String sValue = getSValue(obsFactType.getConceptCd().getName(), obsFactType, true); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, "slateblue", valdp.height, sValue)); } else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, valdp.color, valdp.height, sValue)); } } else { ////////////////////// String sValue = ""; if (same && k != observationFactSet.getObservation().size() - 1) { //if(recorded) { facts.add(obsFactType); //recorded = false; continue; //} /*sValue = getSValueSame(obsFactType.getConceptCd().getName(), obsFactType, false); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString .append(getTimelineDateStringHeightSame( sStart_date, sEnd_date, "slateblue", pset.height, sValue)); } else { resultString .append(getTimelineDateStringHeightSame( sStart_date, sEnd_date, pset.color, pset.height, sValue)); }*/ } //else { if (facts.size() == 0) { facts.add(obsFactType); } sValue = getSValue(curFact.getConceptCd().getName(), facts, false); //} sStart_date = curFact.getStartDate().getMonth() + "-" + curFact.getStartDate().getDay() + "-" + curFact.getStartDate().getYear(); if (curFact.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = curFact.getEndDate().getMonth() + "-" + curFact.getEndDate().getDay() + "-" + curFact.getEndDate().getYear(); } //if ((curStartDate != null) // && (obsFactType.getStartDate() // .compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} } total++; recorded = false; facts.clear(); facts.add(obsFactType); curStartDate = obsFactType.getStartDate(); curFact = obsFactType; ///// if (!same && k == observationFactSet.getObservation().size() - 1) { String sValue = ""; sValue = getSValue(obsFactType.getConceptCd().getName(), facts, false); //} sStart_date = obsFactType.getStartDate().getMonth() + "-" + obsFactType.getStartDate().getDay() + "-" + obsFactType.getStartDate().getYear(); if (obsFactType.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = obsFactType.getEndDate().getMonth() + "-" + obsFactType.getEndDate().getDay() + "-" + obsFactType.getEndDate().getYear(); } //if ((curStartDate != null) // && (obsFactType.getStartDate() // .compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} total++; } //// } else { if (recorded || facts.size() == 0) { curPNum = new String(pnum); continue; } sStart_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear(); //if (obsFactType.getEndDate() == null) { //sEnd_date = sStart_date; //} else { sEnd_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //} //curFact = null; String sValue = getSValue(curFact.getConceptCd().getName(), facts, false); //if ((curStartDate != null) //&& (obsFactType.getStartDate() //.compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} total++; recorded = true; facts.clear(); curStartDate = null;//obsFactType.getStartDate(); curFact = null;//obsFactType; curPNum = new String(pnum); } } } if (total > 0) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, total)); // log.debug(resultString.toString()); resultFile.append(resultString); total = 0; recorded = true; } else { // display all if (displayAll) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, 1)); // log.debug(getTimelineEmptyDateString()); resultFile.append(getTimelineEmptyDateString()); } } if (recorded || facts.size() == 0) { curPNum = new String(pnum); continue; } sStart_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear(); //if (obsFactType.getEndDate() == null) { //sEnd_date = sStart_date; //} else { sEnd_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear(); //} //curFact = null; String sValue = getSValue(curFact.getConceptCd().getName(), facts, false); resultString .append(getTimelineDateStringHeight(sStart_date, sEnd_date, "navyblue", "p10", sValue)); total++; recorded = true; facts.clear(); //curStartDate = obsFactType.getStartDate(); //curFact = obsFactType; curPNum = new String(pnum); if (total > 0) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, total)); // log.debug(resultString.toString()); resultFile.append(resultString); } } } resultFile.append(GetTimelineFooter()); if (writeFile) { String i2b2File = System.getProperty("user.dir") + "/temp/" + "i2b2xml.lld"; File oDelete = new File(i2b2File); if (oDelete != null) oDelete.delete(); RandomAccessFile f = new RandomAccessFile(i2b2File, "rw"); append(f, resultFile.toString()); f.close(); } // log.debug("\nThe lld file: \n"+resultFile.toString()); return resultFile.toString(); } catch (org.apache.axis2.AxisFault e) { e.printStackTrace(); log.error(e.getMessage()); return null; } catch (Exception e) { log.error(e.getMessage()); e.printStackTrace(); return "error"; } }
From source file:edu.harvard.i2b2.adminTool.dataModel.PatientMappingFactory.java
@SuppressWarnings("unchecked") public String generateTimelineData(String result, ArrayList<TimelineRow> rows, boolean writeFile, boolean displayAll, boolean displayDemographics, final MainComposite explorer) { try {/*from w w w .j av a 2 s . c o m*/ PDOResponseMessageModel pdoresponsefactory = new PDOResponseMessageModel(); StatusType statusType = pdoresponsefactory.getStatusFromResponseXML(result); if (!statusType.getType().equalsIgnoreCase("DONE")) { return "error"; } JAXBUtil jaxbUtil = PatientMappingJAXBUtil.getJAXBUtil(); JAXBElement jaxbElement = jaxbUtil.unMashallFromString(result); ResponseMessageType messageType = (ResponseMessageType) jaxbElement.getValue(); BodyType bodyType = messageType.getMessageBody(); PatientDataResponseType responseType = (PatientDataResponseType) new JAXBUnWrapHelper() .getObjectByClass(bodyType.getAny(), PatientDataResponseType.class); PageType pageType = responseType.getPage(); if (pageType != null) { final int returnLastIndex = pageType.getPagingByPatients().getPatientsReturned().getLastIndex() .intValue(); final int returnFirstIndex = pageType.getPagingByPatients().getPatientsReturned().getFirstIndex() .intValue(); final int requestLastIndex = pageType.getPagingByPatients().getPatientsRequested().getLastIndex() .intValue(); if (returnLastIndex < requestLastIndex) { // System.out.println("Can't return all the requested "+ // requestIndex+" patients, only "+returnIndex+" patients returned"); explorer.getDisplay().syncExec(new Runnable() { public void run() { // MessageBox mBox = new MessageBox(explorer // .getShell(), SWT.ICON_INFORMATION // | SWT.OK ); // mBox.setText("Please Note ..."); // mBox.setMessage("Only "+(returnLastIndex-returnFirstIndex+1)+" patients returned"); // mBox.open(); if (explorer.runMode() >= 0) { explorer.setIncrementNumber(returnLastIndex - returnFirstIndex + 1); } else if (explorer.runMode() == -1) { explorer.setDecreaseNumber(returnLastIndex - returnFirstIndex + 1); } } }); explorer.returnedNumber(returnLastIndex - returnFirstIndex + 1); } else { explorer.returnedNumber(-1); } } else { explorer.getDisplay().syncExec(new Runnable() { public void run() { // MessageBox mBox = new MessageBox(explorer // .getShell(), SWT.ICON_INFORMATION // | SWT.OK ); // mBox.setText("Please Note ..."); // mBox.setMessage("Only "+(returnLastIndex-returnFirstIndex+1)+" patients returned"); // mBox.open(); if (explorer.runMode() >= 0) { explorer.setIncrementNumber(-1); } else if (explorer.runMode() == -1) { explorer.setDecreaseNumber(-1); } } }); } StringBuilder resultFile = new StringBuilder(); resultFile.append(GetTimelineHeader()); PatientSet patientDimensionSet = pdoresponsefactory.getPatientSetFromResponseXML(result); if (patientDimensionSet != null) { log.debug("Total patient: " + patientDimensionSet.getPatient().size()); // for(int i=0; // i<patientDimensionSet.getPatientDimension().size();i++) { // PatientDimensionType patientType = // patientDimensionSet.getPatientDimension().get(i); // System.out.println("PatientNum: " + // patientType.getPatientNum()); // } } else { return "error"; } // / testing the visit set // PatientDataType.VisitDimensionSet visitSet = // pdoresponsefactory.getVisitSetFromResponseXML(result); // System.out.println("Total visits: "+visitSet.getVisitDimension(). // size()); List<ObservationSet> factSets = pdoresponsefactory.getFactSetsFromResponseXML(result); log.debug("\nGenerate lld:"); String curPNum = "-1"; for (int i = 0; i < patientDimensionSet.getPatient().size(); i++) { PatientType patientType = patientDimensionSet.getPatient().get(i); String pnum = patientType.getPatientId().getValue(); // Integer pnum = new Integer(snum); // log.debug("PatientNum: " + snum); //if(curPNum.equals("-1")) { curPNum = new String(pnum); //} if (displayDemographics) { resultFile.append(getTimelinePatientString(pnum.toString(), patientType)); } else { resultFile.append(getTimelinePatientString(pnum.toString())); } String path = null; TimelineRow currentRow = null; ObservationSet observationFactSet = null; for (int j = 0; j < rows.size(); j++) { TimelineRow row = rows.get(j); int total = 0; StringBuilder resultString = new StringBuilder(); XMLGregorianCalendar curStartDate = null; //int currentInstanceNum = 0; //String currentConcept = ""; ArrayList<ObservationType> facts = new ArrayList<ObservationType>(); ObservationType curFact = null; boolean recorded = false; String sStart_date = null; String sEnd_date = null; // loop thru all the pdo sets for this row here for (int s = 0; s < row.pdoItems.size(); s++) { PDOItem pset = row.pdoItems.get(s); observationFactSet = null; for (int m = 0; m < factSets.size(); m++) { ObservationSet tmpFactSet = factSets.get(m); if (tmpFactSet.getPanelName().equalsIgnoreCase(pset.panelName())) { observationFactSet = tmpFactSet; path = observationFactSet.getPanelName(); currentRow = row; break; } } if (observationFactSet == null) { continue; } for (int k = 0; k < observationFactSet.getObservation().size(); k++) { ObservationType obsFactType = observationFactSet.getObservation().get(k); //if(curFact == null) { //curFact = obsFactType; //} //facts.add(obsFactType); if (pnum.equals(obsFactType.getPatientId().getValue())) { /* * if ((curStartDate != null) && * (obsFactType.getStartDate().compare( * curStartDate) == DatatypeConstants.EQUAL)) { * continue; } */ if (curFact == null) { curFact = obsFactType; } if (curStartDate == null) { curStartDate = obsFactType.getStartDate(); } sStart_date = obsFactType.getStartDate().getMonth() + "-" + obsFactType.getStartDate().getDay() + "-" + obsFactType.getStartDate().getYear() + " 12:00"; if (obsFactType.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = obsFactType.getEndDate().getMonth() + "-" + obsFactType.getEndDate().getDay() + "-" + obsFactType.getEndDate().getYear() + " 12:00"; } double nval = -1; if (obsFactType.getNvalNum().getValue() != null) { nval = obsFactType.getNvalNum().getValue().doubleValue(); } PDOValueModel valdp = null; if (false) {//pset.hasValueDisplayProperty) { for (int n = 0; n < pset.valDisplayProperties.size(); n++) { PDOValueModel tmpvaldp = pset.valDisplayProperties.get(n); // if (tmpvaldp.inRange(nval)) { valdp = tmpvaldp; // break; // } } String sValue = getSValue(obsFactType.getConceptCd().getName(), obsFactType, true); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, "slateblue", valdp.height, sValue)); } else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, valdp.color, valdp.height, sValue)); } } else { ////////////////////// String sValue = ""; if (sameInstance(curFact, obsFactType)) { //if(recorded) { facts.add(obsFactType); //recorded = false; continue; //} /*sValue = getSValueSame(obsFactType.getConceptCd().getName(), obsFactType, false); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString .append(getTimelineDateStringHeightSame( sStart_date, sEnd_date, "slateblue", pset.height, sValue)); } else { resultString .append(getTimelineDateStringHeightSame( sStart_date, sEnd_date, pset.color, pset.height, sValue)); }*/ } //else { sValue = getSValue(curFact.getConceptCd().getName(), facts, false); //} sStart_date = curFact.getStartDate().getMonth() + "-" + curFact.getStartDate().getDay() + "-" + curFact.getStartDate().getYear() + " 12:00"; if (curFact.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = curFact.getEndDate().getMonth() + "-" + curFact.getEndDate().getDay() + "-" + curFact.getEndDate().getYear() + " 12:00"; } //if ((curStartDate != null) // && (obsFactType.getStartDate() // .compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} } total++; recorded = false; facts.clear(); facts.add(obsFactType); curStartDate = obsFactType.getStartDate(); curFact = obsFactType; } else { if (recorded || facts.size() == 0) { curPNum = new String(pnum); continue; } sStart_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //if (obsFactType.getEndDate() == null) { //sEnd_date = sStart_date; //} else { sEnd_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //} //curFact = null; String sValue = getSValue(curFact.getConceptCd().getName(), facts, false); //if ((curStartDate != null) //&& (obsFactType.getStartDate() //.compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} total++; recorded = true; facts.clear(); curStartDate = null;//obsFactType.getStartDate(); curFact = null;//obsFactType; curPNum = new String(pnum); } } } if (total > 0) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, total)); // log.debug(resultString.toString()); resultFile.append(resultString); total = 0; ////rdtr } else { // display all if (displayAll) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, 1)); // log.debug(getTimelineEmptyDateString()); resultFile.append(getTimelineEmptyDateString()); } } if (recorded || facts.size() == 0) { curPNum = new String(pnum); continue; } sStart_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //if (obsFactType.getEndDate() == null) { //sEnd_date = sStart_date; //} else { sEnd_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //} //curFact = null; String sValue = getSValue(curFact.getConceptCd().getName(), facts, false); resultString .append(getTimelineDateStringHeight(sStart_date, sEnd_date, "navyblue", "p10", sValue)); total++; recorded = true; facts.clear(); //curStartDate = obsFactType.getStartDate(); //curFact = obsFactType; curPNum = new String(pnum); if (total > 0) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, total)); // log.debug(resultString.toString()); resultFile.append(resultString); } } } resultFile.append(GetTimelineFooter()); if (writeFile) { String i2b2File = System.getProperty("user.dir") + "/temp/" + "i2b2xml.lld"; File oDelete = new File(i2b2File); if (oDelete != null) oDelete.delete(); RandomAccessFile f = new RandomAccessFile(i2b2File, "rw"); append(f, resultFile.toString()); f.close(); } // log.debug("\nThe lld file: \n"+resultFile.toString()); return resultFile.toString(); } catch (org.apache.axis2.AxisFault e) { e.printStackTrace(); log.error(e.getMessage()); return null; } catch (Exception e) { log.error(e.getMessage()); e.printStackTrace(); return "error"; } }
From source file:com.evolveum.midpoint.test.util.TestUtil.java
public static void assertBetween(String message, XMLGregorianCalendar start, XMLGregorianCalendar end, XMLGregorianCalendar actual) { assertNotNull(message + " is null", actual); if (start != null) { assertTrue(message + ": expected time to be after " + start + " but it was " + actual, actual.compare(start) == DatatypeConstants.GREATER || actual.compare(start) == DatatypeConstants.EQUAL); }/*from w w w . ja v a2 s . c om*/ if (end != null) { assertTrue(message + ": expected time to be before " + end + " but it was " + actual, actual.compare(end) == DatatypeConstants.LESSER || actual.compare(end) == DatatypeConstants.EQUAL); } }
From source file:edu.harvard.i2b2.adminTool.dataModel.PatientMappingFactory.java
private boolean sameInstance(ObservationType curFact, ObservationType obsFactType) { boolean same = false; //if(obsFactType.getInstanceNum() == null) { //return same; //}/* w ww .j a v a 2 s. c o m*/ if (obsFactType.getStartDate().compare(curFact.getStartDate()) == DatatypeConstants.EQUAL && obsFactType.getConceptCd().getValue().equals(curFact.getConceptCd().getValue()) && ((obsFactType.getInstanceNum() == null) || obsFactType.getInstanceNum().getValue().equals(curFact.getInstanceNum().getValue()))) { same = true; } return same; }
From source file:de.escidoc.core.test.EscidocTestBase.java
/** * Returns a positive integer if ts1 depicts a time after ts2 (ts1 > ts2), 0 if ts1 and ts2 depict the same time * (ts1 == ts2), and a negative integer if if ts1 depicts a time before ts2 (ts1 < ts2). * // w ww. j a va 2 s . c o m * @param ts1 * The first timestamp. * @param ts2 * The second timestamp. * @return The comparison result. * @throws Exception * If anything fails (e.g. one timstamp has incorrect format). */ public static int compareTimestamps(final String ts1, final String ts2) throws Exception { int result = 0; XMLGregorianCalendar date1 = DatatypeFactory.newInstance().newXMLGregorianCalendar(ts1); XMLGregorianCalendar date2 = DatatypeFactory.newInstance().newXMLGregorianCalendar(ts2); int diff = date1.compare(date2); if (diff == DatatypeConstants.LESSER) { result = -1; } else if (diff == DatatypeConstants.GREATER) { result = 1; } else if (diff == DatatypeConstants.EQUAL) { result = 0; } else if (diff == DatatypeConstants.INDETERMINATE) { throw new Exception("Date comparing: INDETERMINATE"); } return result; }