List of usage examples for java.util Vector elementAt
public synchronized E elementAt(int index)
From source file:gov.nih.nci.evs.browser.utils.DataUtils.java
public Vector getNeighborhoodSynonyms(String scheme, String version, String code, String sab) { Debug.println("(*) getNeighborhoodSynonyms ..." + sab); Vector parent_asso_vec = new Vector(Arrays.asList(_hierAssocToParentNodes)); Vector child_asso_vec = new Vector(Arrays.asList(_hierAssocToChildNodes)); Vector sibling_asso_vec = new Vector(Arrays.asList(_assocToSiblingNodes)); Vector bt_vec = new Vector(Arrays.asList(_assocToBTNodes)); Vector nt_vec = new Vector(Arrays.asList(_assocToNTNodes)); Vector w = new Vector(); HashSet hset = new HashSet(); long ms = System.currentTimeMillis(), delay = 0; String action = "Retrieving distance-one relationships from the server"; // HashMap hmap = getAssociatedConceptsHashMap(scheme, version, code, // sab);// w ww. j a v a 2 s . c om HashMap hmap = getRelatedConceptsHashMap(scheme, version, code, sab); delay = System.currentTimeMillis() - ms; Debug.println("Run time (ms) for " + action + " " + delay); DBG.debugDetails(delay, action, "getNeighborhoodSynonyms"); //Set keyset = hmap.keySet(); //Iterator it = keyset.iterator(); Iterator it = hmap.entrySet().iterator(); HashSet rel_hset = new HashSet(); HashSet hasSubtype_hset = new HashSet(); long ms_categorization_delay = 0; long ms_categorization; long ms_find_highest_rank_atom_delay = 0; long ms_find_highest_rank_atom; long ms_remove_RO_delay = 0; long ms_remove_RO; long ms_all_delay = 0; long ms_all; ms_all = System.currentTimeMillis(); while (it.hasNext()) { ms_categorization = System.currentTimeMillis(); //String rel_rela = (String) it.next(); // _logger.debug("rel_rela: " + rel_rela); Entry thisEntry = (Entry) it.next(); String rel_rela = (String) thisEntry.getKey(); if (rel_rela.compareTo(INCOMPLETE) != 0) { Vector u = parseData(rel_rela, "|"); String rel = (String) u.elementAt(0); String rela = (String) u.elementAt(1); String category = "Other"; if (parent_asso_vec.contains(rel)) category = "Parent"; else if (child_asso_vec.contains(rel)) category = "Child"; else if (bt_vec.contains(rel)) category = "Broader"; else if (nt_vec.contains(rel)) category = "Narrower"; /* * if (parent_asso_vec.contains(rel)) category = "Child"; else * if (child_asso_vec.contains(rel)) category = "Parent"; else * if (bt_vec.contains(rel)) category = "Narrower"; else if * (nt_vec.contains(rel)) category = "Broader"; */ else if (sibling_asso_vec.contains(rel)) category = "Sibling"; ms_categorization_delay = ms_categorization_delay + (System.currentTimeMillis() - ms_categorization); //Object obj = hmap.get(rel_rela); Object obj = thisEntry.getValue(); if (obj != null) { Vector v = (Vector) obj; // For each related concept: for (int i = 0; i < v.size(); i++) { AssociatedConcept ac = (AssociatedConcept) v.elementAt(i); EntityDescription ed = ac.getEntityDescription(); Entity c = ac.getReferencedEntry(); if (!hset.contains(c.getEntityCode())) { hset.add(c.getEntityCode()); // Find the highest ranked atom data ms_find_highest_rank_atom = System.currentTimeMillis(); String t = findRepresentativeTerm(c, sab); ms_find_highest_rank_atom_delay = ms_find_highest_rank_atom_delay + (System.currentTimeMillis() - ms_find_highest_rank_atom); t = t + "|" + c.getEntityCode() + "|" + rela + "|" + category; // _logger.debug(t); w.add(t); // Temporarily save non-RO other relationships if (category.compareTo("Other") == 0 && category.compareTo("RO") != 0) { if (rel_hset.contains(c.getEntityCode())) { rel_hset.add(c.getEntityCode()); } } if (category.compareTo("Child") == 0 && category.compareTo("CHD") != 0) { if (hasSubtype_hset.contains(c.getEntityCode())) { hasSubtype_hset.add(c.getEntityCode()); } } } } } } } Vector u = new Vector(); // Remove redundant RO relationships for (int i = 0; i < w.size(); i++) { String s = (String) w.elementAt(i); Vector<String> v = parseData(s, "|"); if (v.size() >= 5) { String associationName = v.elementAt(5); if (associationName.compareTo("RO") != 0) { u.add(s); } else { String associationTargetCode = v.elementAt(4); if (!rel_hset.contains(associationTargetCode)) { u.add(s); } } } } // Remove redundant CHD relationships for (int i = 0; i < w.size(); i++) { String s = (String) w.elementAt(i); Vector<String> v = parseData(s, "|"); if (v.size() >= 5) { String associationName = v.elementAt(5); if (associationName.compareTo("CHD") != 0) { u.add(s); } else { String associationTargetCode = v.elementAt(4); if (!rel_hset.contains(associationTargetCode)) { u.add(s); } } } } ms_all_delay = System.currentTimeMillis() - ms_all; action = "categorizing relationships into six categories"; Debug.println("Run time (ms) for " + action + " " + ms_categorization_delay); DBG.debugDetails(ms_categorization_delay, action, "getNeighborhoodSynonyms"); action = "finding highest ranked atoms"; Debug.println("Run time (ms) for " + action + " " + ms_find_highest_rank_atom_delay); DBG.debugDetails(ms_find_highest_rank_atom_delay, action, "getNeighborhoodSynonyms"); ms_remove_RO_delay = ms_all_delay - ms_categorization_delay - ms_find_highest_rank_atom_delay; action = "removing redundant RO relationships"; Debug.println("Run time (ms) for " + action + " " + ms_remove_RO_delay); DBG.debugDetails(ms_remove_RO_delay, action, "getNeighborhoodSynonyms"); // Initial sort (refer to sortSynonymData method for sorting by a // specific column) long ms_sort_delay = System.currentTimeMillis(); u = removeRedundantRecords(u); SortUtils.quickSort(u); action = "initial sorting"; delay = System.currentTimeMillis() - ms_sort_delay; Debug.println("Run time (ms) for " + action + " " + delay); DBG.debugDetails(delay, action, "getNeighborhoodSynonyms"); DBG.debugDetails("Max Return", NCImBrowserProperties.get_maxToReturn()); return u; }
From source file:gov.nih.nci.evs.browser.utils.DataUtils.java
public HashMap getRelationshipHashMap(String scheme, String version, String code, String sab) { // EVSApplicationService lbSvc = new // RemoteServerUtil().createLexBIGService(); LexBIGService lbSvc = RemoteServerUtil.createLexBIGService(); CodingSchemeVersionOrTag csvt = new CodingSchemeVersionOrTag(); if (version != null) csvt.setVersion(version);/* w w w . j a v a2s .c om*/ // Perform the query ... ResolvedConceptReferenceList matches = null; //List list = new ArrayList();// getSupportedRoleNames(lbSvc, scheme, // version); ArrayList roleList = new ArrayList(); ArrayList associationList = new ArrayList(); ArrayList superconceptList = new ArrayList(); ArrayList siblingList = new ArrayList(); ArrayList subconceptList = new ArrayList(); ArrayList btList = new ArrayList(); ArrayList ntList = new ArrayList(); Vector parent_asso_vec = new Vector(Arrays.asList(_hierAssocToParentNodes)); Vector child_asso_vec = new Vector(Arrays.asList(_hierAssocToChildNodes)); Vector sibling_asso_vec = new Vector(Arrays.asList(_assocToSiblingNodes)); Vector bt_vec = new Vector(Arrays.asList(_assocToBTNodes)); Vector nt_vec = new Vector(Arrays.asList(_assocToNTNodes)); HashMap map = new HashMap(); try { // LexBIGServiceConvenienceMethods lbscm = // createLexBIGServiceConvenienceMethods(lbSvc); /* * LexBIGServiceConvenienceMethods lbscm = * (LexBIGServiceConvenienceMethods) lbSvc * .getGenericExtension("LexBIGServiceConvenienceMethods"); * lbscm.setLexBIGService(lbSvc); */ CodedNodeGraph cng = lbSvc.getNodeGraph(scheme, csvt, null); if (sab != null) { cng = cng.restrictToAssociations(null, Constructors.createNameAndValueList(sab, SOURCE)); } int maxToReturn = NCImBrowserProperties.get_maxToReturn(); matches = cng.resolveAsList(ConvenienceMethods.createConceptReference(code, scheme), true, false, 1, 1, _noopList, null, null, null, maxToReturn, false); if (matches.getResolvedConceptReferenceCount() > 0) { Enumeration<ResolvedConceptReference> refEnum = (Enumeration<ResolvedConceptReference>) matches .enumerateResolvedConceptReference(); while (refEnum.hasMoreElements()) { ResolvedConceptReference ref = refEnum.nextElement(); AssociationList sourceof = ref.getSourceOf(); Association[] associations = sourceof.getAssociation(); for (int i = 0; i < associations.length; i++) { Association assoc = associations[i]; String associationName = assoc.getAssociationName(); // String associationName = // lbscm.getAssociationNameFromAssociationCode(scheme, // csvt, assoc.getAssociationName()); AssociatedConcept[] acl = assoc.getAssociatedConcepts().getAssociatedConcept(); for (int j = 0; j < acl.length; j++) { AssociatedConcept ac = acl[j]; EntityDescription ed = ac.getEntityDescription(); String name = "No Description"; if (ed != null) name = ed.getContent(); String pt = name; if (associationName.compareToIgnoreCase("equivalentClass") != 0) { String s = associationName + "|" + pt + "|" + ac.getConceptCode(); if (!parent_asso_vec.contains(associationName) && !child_asso_vec.contains(associationName)) { if (sibling_asso_vec.contains(associationName)) { siblingList.add(s); } else if (bt_vec.contains(associationName)) { btList.add(s); } else if (nt_vec.contains(associationName)) { ntList.add(s); } else { associationList.add(s); } } } } } } } if (roleList.size() > 0) { SortUtils.quickSort(roleList); } if (associationList.size() > 0) { // KLO, 052909 associationList = removeRedundantRelationships(associationList, "RO"); SortUtils.quickSort(associationList); } if (siblingList.size() > 0) { SortUtils.quickSort(siblingList); } if (btList.size() > 0) { SortUtils.quickSort(btList); } if (ntList.size() > 0) { SortUtils.quickSort(ntList); } map.put(TYPE_ROLE, roleList); map.put(TYPE_ASSOCIATION, associationList); map.put(TYPE_SIBLINGCONCEPT, siblingList); map.put(TYPE_BROADERCONCEPT, btList); map.put(TYPE_NARROWERCONCEPT, ntList); Vector superconcept_vec = getSuperconcepts(scheme, version, code); for (int i = 0; i < superconcept_vec.size(); i++) { Entity c = (Entity) superconcept_vec.elementAt(i); // String pt = getPreferredName(c); String pt = c.getEntityDescription().getContent(); superconceptList.add(pt + "|" + c.getEntityCode()); } SortUtils.quickSort(superconceptList); map.put(TYPE_SUPERCONCEPT, superconceptList); Vector subconcept_vec = getSubconcepts(scheme, version, code); for (int i = 0; i < subconcept_vec.size(); i++) { Entity c = (Entity) subconcept_vec.elementAt(i); // String pt = getPreferredName(c); String pt = c.getEntityDescription().getContent(); subconceptList.add(pt + "|" + c.getEntityCode()); } SortUtils.quickSort(subconceptList); map.put(TYPE_SUBCONCEPT, subconceptList); } catch (Exception ex) { ex.printStackTrace(); } return map; }
From source file:gov.nih.nci.evs.browser.utils.DataUtils.java
public Vector sortSynonyms(Vector synonyms, String sortBy) { if (sortBy == null) sortBy = "name"; HashMap hmap = new HashMap(); Vector key_vec = new Vector(); String delim = " "; for (int n = 0; n < synonyms.size(); n++) { String s = (String) synonyms.elementAt(n); Vector synonym_data = parseData(s, "|"); String term_name = (String) synonym_data.elementAt(0); String term_type = (String) synonym_data.elementAt(1); String term_source = (String) synonym_data.elementAt(2); String term_source_code = (String) synonym_data.elementAt(3); String key = term_name + delim + term_source + delim + term_source_code + delim + term_type; if (sortBy.compareTo("type") == 0) key = term_type + delim + term_name + delim + term_source + delim + term_source_code; if (sortBy.compareTo("source") == 0) key = term_source + delim + term_name + delim + term_source_code + delim + term_type; if (sortBy.compareTo("code") == 0) key = term_source_code + delim + term_name + delim + term_source + delim + term_type; hmap.put(key, s);//from w w w. j a v a2 s.c o m key_vec.add(key); } key_vec = SortUtils.quickSort(key_vec); Vector v = new Vector(); for (int i = 0; i < key_vec.size(); i++) { String s = (String) key_vec.elementAt(i); v.add((String) hmap.get(s)); } return v; }
From source file:gov.nih.nci.evs.browser.servlet.AjaxServlet.java
public void resolveValueSetAction(HttpServletRequest request, HttpServletResponse response) { String selectedvalueset = null; //String selectedvalueset = (String) request.getParameter("valueset"); String multiplematches = HTTPUtils.cleanXSS((String) request.getParameter("multiplematches")); if (multiplematches != null) { selectedvalueset = HTTPUtils.cleanXSS((String) request.getParameter("valueset")); } else {//from www . ja va2 s . c o m selectedvalueset = HTTPUtils.cleanXSS((String) request.getParameter("vsd_uri")); if (selectedvalueset != null && selectedvalueset.indexOf("|") != -1) { Vector u = DataUtils.parseData(selectedvalueset); selectedvalueset = (String) u.elementAt(1); } } String vsd_uri = selectedvalueset; request.getSession().setAttribute("selectedvalueset", selectedvalueset); String key = vsd_uri; request.getSession().setAttribute("vsd_uri", vsd_uri); String[] coding_scheme_ref = null; Vector w = DataUtils.getCodingSchemeReferencesInValueSetDefinition(vsd_uri, "PRODUCTION"); if (w != null) { coding_scheme_ref = new String[w.size()]; for (int i = 0; i < w.size(); i++) { String s = (String) w.elementAt(i); coding_scheme_ref[i] = s; } } if (coding_scheme_ref == null || coding_scheme_ref.length == 0) { String msg = "No PRODUCTION version of coding scheme is available."; request.getSession().setAttribute("message", msg); try { String nextJSP = "/pages/resolve_value_set.jsf"; RequestDispatcher dispatcher = getServletContext().getRequestDispatcher(nextJSP); dispatcher.forward(request, response); } catch (Exception ex) { ex.printStackTrace(); } return; //return "resolve_value_set"; } AbsoluteCodingSchemeVersionReferenceList csvList = new AbsoluteCodingSchemeVersionReferenceList(); StringBuffer buf = new StringBuffer(); for (int i = 0; i < coding_scheme_ref.length; i++) { String t = coding_scheme_ref[i]; String delim = "|"; if (t.indexOf("|") == -1) { delim = "$"; } Vector u = DataUtils.parseData(t, delim); String uri = (String) u.elementAt(0); String version = (String) u.elementAt(1); if (version == null || version.compareTo("null") == 0) { version = DataUtils.getVocabularyVersionByTag(uri, "PRODUCTION"); } //key = key + "|" + uri + "$" + version; buf.append("|" + uri + "$" + version); csvList.addAbsoluteCodingSchemeVersionReference( Constructors.createAbsoluteCodingSchemeVersionReference(uri, version)); } key = key + buf.toString(); request.getSession().setAttribute("coding_scheme_ref", coding_scheme_ref); //long time = System.currentTimeMillis(); LexEVSValueSetDefinitionServices vsd_service = RemoteServerUtil.getLexEVSValueSetDefinitionServices(); ResolvedValueSetDefinition rvsd = null; int lcv = 0; try { ValueSetDefinition vsd = DataUtils.findValueSetDefinitionByURI(vsd_uri); rvsd = vsd_service.resolveValueSetDefinition(vsd, csvList, null, null); if (rvsd != null) { ResolvedConceptReferencesIterator itr = rvsd.getResolvedConceptReferenceIterator(); IteratorBeanManager iteratorBeanManager = null; if (FacesContext.getCurrentInstance() != null && FacesContext.getCurrentInstance().getExternalContext() != null && FacesContext.getCurrentInstance().getExternalContext().getSessionMap() != null) { iteratorBeanManager = (IteratorBeanManager) FacesContext.getCurrentInstance() .getExternalContext().getSessionMap().get("iteratorBeanManager"); } if (iteratorBeanManager == null) { iteratorBeanManager = new IteratorBeanManager(); request.getSession().setAttribute("iteratorBeanManager", iteratorBeanManager); } request.getSession().setAttribute("ResolvedConceptReferencesIterator", itr); IteratorBean iteratorBean = iteratorBeanManager.getIteratorBean(key); if (iteratorBean == null) { iteratorBean = new IteratorBean(itr); iteratorBean.initialize(); iteratorBean.setKey(key); iteratorBeanManager.addIteratorBean(iteratorBean); } request.getSession().setAttribute("coding_scheme_ref", coding_scheme_ref); request.getSession().setAttribute("ResolvedConceptReferencesIterator", itr); request.getSession().setAttribute("resolved_vs_key", key); try { String nextJSP = "/pages/resolved_value_set.jsf"; RequestDispatcher dispatcher = getServletContext().getRequestDispatcher(nextJSP); dispatcher.forward(request, response); } catch (Exception ex) { ex.printStackTrace(); } //return "resolved_value_set"; return; } } catch (Exception ex) { ex.printStackTrace(); } String msg = "Unable to resolve the value set " + vsd_uri; request.getSession().setAttribute("message", msg); try { String nextJSP = "/pages/resolved_value_set.jsf"; RequestDispatcher dispatcher = getServletContext().getRequestDispatcher(nextJSP); dispatcher.forward(request, response); } catch (Exception ex) { ex.printStackTrace(); } //return "resolved_value_set"; }
From source file:org.aselect.server.request.handler.aselect.authentication.ApplicationBrowserHandler.java
/** * Get the AuthSP servers for the given user. * Private method that fetches the authentication service providers from the user database * of the A-Select Servers./*from www . j a v a 2 s.c o m*/ * The user may have been registered or entitled to use several authentication service providers. * But only the ones that satisfy the level for the current application are returned by filtering the * authsp's with lower levels out. * * @param sRid * The RID. * @param sUid * the uid * @throws ASelectException */ private void getUserAuthsps(String sRid, String sUid) throws ASelectException { String sMethod = "getUserAuthsps"; HashMap htUserAuthsps = new HashMap(); try { IUDBConnector oUDBConnector = null; try { oUDBConnector = UDBConnectorFactory.getUDBConnector(); } catch (ASelectException e) { _systemLogger.log(Level.WARNING, _sModule, sMethod, "Failed to connect with UDB.", e); throw e; } // Get user's attributes from the UDB HashMap htUserProfile = oUDBConnector.getUserProfile(sUid); if (!((String) htUserProfile.get("result_code")).equals(Errors.ERROR_ASELECT_SUCCESS)) { _systemLogger.log(Level.WARNING, _sModule, sMethod, "Failed to get user profile, result=" + (String) htUserProfile.get("result_code")); throw new ASelectException((String) htUserProfile.get("result_code")); } htUserAuthsps = (HashMap) htUserProfile.get("user_authsps"); if (htUserAuthsps == null) { // should never happen _systemLogger.log(Level.SEVERE, _sModule, sMethod, "INTERNAL ERROR no \"user_authsps\" found"); throw new ASelectException(Errors.ERROR_ASELECT_INTERNAL_ERROR); } String udbType = (String) htUserProfile.get("udb_type"); _systemLogger.log(Level.INFO, _sModule, sMethod, "uid=" + sUid + " udb_type=" + udbType + " profile=" + htUserProfile + " user_authsps=" + htUserAuthsps + " SessionContext=" + _htSessionContext); // Which level is required for the application? // 20090110, Bauke added required_level! Integer intMaxLevel = (Integer) _htSessionContext.get("max_level"); // 'max_level' can be null Integer intLevel = (Integer) _htSessionContext.get("level"); String sRequiredLevel = (String) _htSessionContext.get("required_level"); Integer intSubLevel = (Integer) _htSessionContext.get("sub_level"); Integer intRequiredLevel = (sRequiredLevel == null) ? intLevel : Integer.valueOf(sRequiredLevel); _systemLogger.log(Level.INFO, _sModule, sMethod, "required_level=" + intRequiredLevel + " level=" + intLevel + " maxlevel=" + intMaxLevel); // Fetch the authsps that the user has registered for and // that satisfy the level for the current application // Vector vConfiguredAuthSPs = _authspHandlerManager.getConfiguredAuthSPs(intRequiredLevel, intMaxLevel); // RH, 20140424, o // RH, 20140424, sn Vector vConfiguredAuthSPs = null; if (intSubLevel == null) { // They old way vConfiguredAuthSPs = _authspHandlerManager.getConfiguredAuthSPs(intRequiredLevel, intMaxLevel); } else { vConfiguredAuthSPs = _authspHandlerManager.getConfiguredAuthSPs(intSubLevel, intMaxLevel); } // RH, 20140424, sn if (vConfiguredAuthSPs == null) { _systemLogger.log(Level.WARNING, _sModule, sMethod, "INTERNAL ERROR" + sUid); throw new ASelectException(Errors.ERROR_ASELECT_INTERNAL_ERROR); } // 20130405, Bauke: // If "noudb" is in effect, the user attributes cannot have been set. // In that case, we will substitute the uid that was entered by the user for it. // Added so the Radius AuthSP could work without having a "UDB". boolean isNoUdb = "noudb".equals(udbType); HashMap htAllowedAuthsps = new HashMap(); for (int i = 0; i < vConfiguredAuthSPs.size(); i++) { String sAuthSP = (String) vConfiguredAuthSPs.elementAt(i); if (htUserAuthsps.containsKey(sAuthSP)) { String authSpAttr = (String) htUserAuthsps.get(sAuthSP); htAllowedAuthsps.put(sAuthSP, isNoUdb ? sUid : authSpAttr); } } if (htAllowedAuthsps.size() == 0) { _systemLogger.log(Level.WARNING, _sModule, sMethod, "No valid AuthSPs found for user: " + sUid); throw new ASelectException(Errors.ERROR_ASELECT_SERVER_USER_NOT_ALLOWED); } _systemLogger.log(Level.INFO, _sModule, sMethod, "Allowed AuthSPs " + htAllowedAuthsps); _htSessionContext.put("allowed_user_authsps", htAllowedAuthsps); _htSessionContext.put("user_id", sUid); // RH, should be set through AbstractBrowserRequestHandler // but this seems to be the wrong one (AbstractBrowserRequestHandler // sets the idp address on the idp) _systemLogger.log(Level.INFO, _sModule, sMethod, "_htSessionContext client_ip was " + _htSessionContext.get("client_ip") + ", set to " + get_servletRequest().getRemoteAddr()); _htSessionContext.put("client_ip", get_servletRequest().getRemoteAddr()); _sessionManager.setUpdateSession(_htSessionContext, _systemLogger); // 20120401, Bauke: postpone session action return; } catch (ASelectException e) { throw e; } }
From source file:gov.nih.nci.evs.browser.utils.DataUtils.java
public HashMap getAssociationTargetHashMap(String CUI, Vector sort_option) { Debug.println("(*) DataUtils getAssociationTargetHashMap "); long ms, delay = 0; String action = null;// w w w . ja v a 2 s. c o m ms = System.currentTimeMillis(); action = "Initializing member variables"; List<String> par_chd_assoc_list = new ArrayList(); par_chd_assoc_list.add("CHD"); par_chd_assoc_list.add("RB"); Vector parent_asso_vec = new Vector(Arrays.asList(_hierAssocToParentNodes)); Vector child_asso_vec = new Vector(Arrays.asList(_hierAssocToChildNodes)); Vector sibling_asso_vec = new Vector(Arrays.asList(_assocToSiblingNodes)); Vector bt_vec = new Vector(Arrays.asList(_assocToBTNodes)); Vector nt_vec = new Vector(Arrays.asList(_assocToNTNodes)); Vector category_vec = new Vector(Arrays.asList(_relationshipCategories)); HashMap rel_hmap = new HashMap(); for (int k = 0; k < category_vec.size(); k++) { String category = (String) category_vec.elementAt(k); HashSet hset = new HashSet(); rel_hmap.put(category, hset); } HashSet w = new HashSet(); Map<String, List<RelationshipTabResults>> map = null; Map<String, List<RelationshipTabResults>> map2 = null; LexBIGService lbs = RemoteServerUtil.createLexBIGService(); MetaBrowserService mbs = null; delay = System.currentTimeMillis() - ms; Debug.println("Run time (ms) for " + action + " " + delay); DBG.debugDetails(delay, action, "getAssociationTargetHashMap"); try { mbs = (MetaBrowserService) lbs.getGenericExtension("metabrowser-extension"); if (mbs == null) { _logger.error("Error! metabrowser-extension is null!"); return null; } ms = System.currentTimeMillis(); action = "Retrieving " + SOURCE_OF; ms = System.currentTimeMillis(); //_logger.info("CUI: " + CUI); //_logger.info("Direction: " + Direction.SOURCEOF); map = mbs.getRelationshipsDisplay(CUI, null, Direction.SOURCEOF); //_logger.info("Done !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! getRelationshipsDisplay !!!!"); delay = System.currentTimeMillis() - ms; Debug.println("Run time (ms) for " + action + " " + delay); DBG.debugDetails(delay, action, "getAssociationTargetHashMap"); ms = System.currentTimeMillis(); action = "Retrieving " + TARGET_OF; ms = System.currentTimeMillis(); map2 = mbs.getRelationshipsDisplay(CUI, par_chd_assoc_list, Direction.TARGETOF); delay = System.currentTimeMillis() - ms; Debug.println("Run time (ms) for " + action + " " + delay); DBG.debugDetails(delay, action, "getAssociationTargetHashMap"); } catch (Exception ex) { ex.printStackTrace(); return null; } // Categorize relationships into six categories and find association // source data ms = System.currentTimeMillis(); action = "Categorizing relationships into six categories; finding source data for each relationship"; Iterator rel_it = map.entrySet().iterator(); while (rel_it.hasNext()) { Entry thisEntry = (Entry) rel_it.next(); String rel = (String) thisEntry.getKey(); List<RelationshipTabResults> relations = (List<RelationshipTabResults>) thisEntry.getValue(); //for (String rel : map.keySet()) { //List<RelationshipTabResults> relations = map.get(rel); if (rel.compareTo(INCOMPLETE) != 0) { String category = "Other"; /* * if (parent_asso_vec.contains(rel)) category = "Parent"; else * if (child_asso_vec.contains(rel)) category = "Child"; else if * (bt_vec.contains(rel)) category = "Broader"; else if * (nt_vec.contains(rel)) category = "Narrower"; */ if (parent_asso_vec.contains(rel)) category = "Child"; else if (child_asso_vec.contains(rel)) category = "Parent"; else if (bt_vec.contains(rel)) category = "Narrower"; else if (nt_vec.contains(rel)) category = "Broader"; else if (sibling_asso_vec.contains(rel)) category = "Sibling"; for (RelationshipTabResults result : relations) { String code = result.getCui(); if (code.compareTo(CUI) != 0 && code.indexOf("@") == -1) { String rela = result.getRela(); String source = result.getSource(); String name = result.getName(); w = (HashSet) rel_hmap.get(category); if (w == null) { w = new HashSet(); } String str = rela + "|" + name + "|" + code + "|" + source; if (!w.contains(str)) { w.add(str); rel_hmap.put(category, w); } } } } } Iterator rel_it2 = map2.entrySet().iterator(); while (rel_it2.hasNext()) { Entry thisEntry = (Entry) rel_it2.next(); String rel = (String) thisEntry.getKey(); List<RelationshipTabResults> relations = (List<RelationshipTabResults>) thisEntry.getValue(); //for (String rel : map2.keySet()) { //List<RelationshipTabResults> relations = map2.get(rel); if (rel.compareTo(INCOMPLETE) != 0) { String category = "Other"; /* * if (parent_asso_vec.contains(rel)) category = "Parent"; else * if (child_asso_vec.contains(rel)) category = "Child"; else if * (bt_vec.contains(rel)) category = "Broader"; else if * (nt_vec.contains(rel)) category = "Narrower"; */ if (parent_asso_vec.contains(rel)) category = "Child"; else if (child_asso_vec.contains(rel)) category = "Parent"; else if (bt_vec.contains(rel)) category = "Narrower"; else if (nt_vec.contains(rel)) category = "Broader"; else if (sibling_asso_vec.contains(rel)) category = "Sibling"; for (RelationshipTabResults result : relations) { String code = result.getCui(); if (code.compareTo(CUI) != 0 && code.indexOf("@") == -1) { String rela = result.getRela(); String source = result.getSource(); String name = result.getName(); w = (HashSet) rel_hmap.get(category); if (w == null) { w = new HashSet(); } String str = rela + "|" + name + "|" + code + "|" + source; if (!w.contains(str)) { w.add(str); rel_hmap.put(category, w); } } } } } delay = System.currentTimeMillis() - ms; Debug.println("Run time (ms) for " + action + " " + delay); DBG.debugDetails(delay, action, "getAssociationTargetHashMap"); // Remove redundant RO relationships ms = System.currentTimeMillis(); action = "Removing redundant RO and CHD relationships"; HashSet other_hset = new HashSet(); HashSet w2 = (HashSet) rel_hmap.get("Other"); Iterator it = w2.iterator(); while (it.hasNext()) { String s = (String) it.next(); Vector ret_vec = parseData(s, "|"); String rel = (String) ret_vec.elementAt(0); String name = (String) ret_vec.elementAt(1); String target_code = (String) ret_vec.elementAt(2); String src = (String) ret_vec.elementAt(3); String t = name + "|" + target_code + "|" + src; if (rel.compareTo("RO") != 0 && !other_hset.contains(t)) { other_hset.add(t); } } HashSet w3 = new HashSet(); w2 = (HashSet) rel_hmap.get("Other"); it = w2.iterator(); while (it.hasNext()) { String s = (String) it.next(); Vector ret_vec = parseData(s, "|"); String rel = (String) ret_vec.elementAt(0); String name = (String) ret_vec.elementAt(1); String target_code = (String) ret_vec.elementAt(2); String src = (String) ret_vec.elementAt(3); if (rel.compareTo("RO") != 0) { w3.add(s); } else { // RO String t = name + "|" + target_code + "|" + src; if (!other_hset.contains(t)) { w3.add(s); } } } rel_hmap.put("Other", w3); other_hset = new HashSet(); w2 = (HashSet) rel_hmap.get("Child"); it = w2.iterator(); while (it.hasNext()) { String s = (String) it.next(); Vector ret_vec = parseData(s, "|"); String rel = (String) ret_vec.elementAt(0); String name = (String) ret_vec.elementAt(1); String target_code = (String) ret_vec.elementAt(2); String src = (String) ret_vec.elementAt(3); String t = name + "|" + target_code + "|" + src; if (rel.compareTo("CHD") != 0 && !other_hset.contains(t)) { other_hset.add(t); } } w3 = new HashSet(); w2 = (HashSet) rel_hmap.get("Child"); it = w2.iterator(); while (it.hasNext()) { String s = (String) it.next(); Vector ret_vec = parseData(s, "|"); String rel = (String) ret_vec.elementAt(0); String name = (String) ret_vec.elementAt(1); String target_code = (String) ret_vec.elementAt(2); String src = (String) ret_vec.elementAt(3); if (rel.compareTo("CHD") != 0) { w3.add(s); } else { String t = name + "|" + target_code + "|" + src; if (!other_hset.contains(t)) { w3.add(s); } } } rel_hmap.put("Child", w3); delay = System.currentTimeMillis() - ms; Debug.println("Run time (ms) for " + action + " " + delay); DBG.debugDetails(delay, action, "getAssociationTargetHashMap"); ms = System.currentTimeMillis(); action = "Sorting relationships by sort options (columns)"; HashMap new_rel_hmap = new HashMap(); // Sort relationships by sort options (columns) if (sort_option == null) { for (int k = 0; k < category_vec.size(); k++) { String category = (String) category_vec.elementAt(k); w = (HashSet) rel_hmap.get(category); Vector rel_v = hashSet2Vector(w); SortUtils.quickSort(rel_v); new_rel_hmap.put(category, rel_v); } } else { for (int k = 0; k < category_vec.size(); k++) { String category = (String) category_vec.elementAt(k); w = (HashSet) rel_hmap.get(category); Vector rel_v = hashSet2Vector(w); String sortOption = (String) sort_option.elementAt(k); rel_v = sortRelationshipData(rel_v, sortOption); new_rel_hmap.put(category, rel_v); } } delay = System.currentTimeMillis() - ms; Debug.println("Run time (ms) for " + action + " " + delay); DBG.debugDetails(delay, action, "getAssociationTargetHashMap"); // KLO, testing Vector sibling_vector = getSiblings(CUI); if (sort_option != null) { sibling_vector = sortRelationshipData(sibling_vector, (String) sort_option.elementAt(4)); } //new_rel_hmap.put("Sibling", getSiblings(CUI)); new_rel_hmap.put("Sibling", sibling_vector); removeRedundantRecords(new_rel_hmap); String incomplete = (String) new_rel_hmap.get(INCOMPLETE); if (incomplete != null) { new_rel_hmap.put(INCOMPLETE, incomplete); } return new_rel_hmap; }
From source file:org.bibsonomy.importer.bookmark.file.FirefoxImporter.java
/** * Parses a given node and extracts all links and folders. Uppertags * contains all tags provided by nodes above the given node (folder). * Bookmarks is requiered because createBookmarks works recursively. * /*w ww .j av a 2 s. co m*/ * @param Node * folder * @param Vector * <String> upperTags * @param LinkedList * <Bookmark>bookmarks * @return */ private void createBookmarks(final Node folder, final Vector<String> upperTags, final User user, final String groupName) { // the post gets today's time final Date today = new Date(); // every node requires his own tags Vector<String> tags; // if tags are provided by upper nodes these tags belong to this node // too if (upperTags != null) { tags = new Vector<String>(upperTags); } // if no tags are provided create a new vector else { tags = new Vector<String>(); } // nodelist to parse all children of the given node NodeList children = folder.getChildNodes(); // String to save a foldername if its name is given in a sibling of the // concerning DL String sepTag = ""; for (int i = 0; i < children.getLength(); i++) { Node currentNode = children.item(i); // connect all upper tags with the currentNode Vector<String> myTags = new Vector<String>(tags); if (!"".equals(sepTag)) { myTags.add(sepTag); } // is currentNode a folder? if ("dd".equals(currentNode.getNodeName())) { NodeList secondGen = currentNode.getChildNodes(); // only containing a name? // yes, keep tag if (secondGen.getLength() == 1 && "h3".equals(secondGen.item(0).getNodeName())) { sepTag = secondGen.item(0).getFirstChild().getNodeValue().replaceAll("->|<-|\\s", "_"); } else if (secondGen.getLength() > 1) { // filtert dd-knoten, // die nur einen // p-knoten besitzen // else find all folders an theis names for (int j = 0; j < secondGen.getLength(); j++) { Node son = secondGen.item(j); if ("h3".equals(son.getNodeName())) { // if sepTag != "" remove last added tag and reset // sepTag if (!"".equals(sepTag)) { myTags.remove(sepTag); sepTag = ""; } // if upperTags != myTags, a parallel branch was // parsed -> reset myTags if (tags.size() != myTags.size()) { myTags = tags; } // add a found tag myTags.add(son.getFirstChild().getNodeValue().replaceAll("->|<-|\\s", "_")); } // all dl-nodes are new folders if ("dl".equals(son.getNodeName())) { // create bookmarks from new found node createBookmarks(son, myTags, user, groupName); } } // for(int j=... } // else if } // if ("dd".equals.... // if its no folder.... is it a link? /* * sometimes the tidy parser decides that <dt></dt> has childnodes * ... need to check if the childnode of <dt> is an <a> to avoid * NullPointerExceptions!!!! */ else if ("dt".equals(currentNode.getNodeName()) && "a".equals(currentNode.getFirstChild().getNodeName())) { // it is a link // create bookmark-object // need to check if the <a>-Tag has a name (ChildNodes) i.e. <a // href="http://www.foo.bar"></a> causes a failure if (currentNode.getFirstChild().hasChildNodes() == true) { Post<Bookmark> bookmarkPost = new Post<Bookmark>(); bookmarkPost.setResource(new Bookmark()); bookmarkPost.getResource().setTitle(currentNode.getFirstChild().getFirstChild().getNodeValue()); bookmarkPost.getResource().setUrl( currentNode.getFirstChild().getAttributes().getNamedItem("href").getNodeValue()); // add tags/relations to bookmark if (upperTags != null) { // only 1 tag found -> add a tag if (upperTags.size() == 1) { // bookmark.setTags(upperTags.elementAt(0)); bookmarkPost.addTag(upperTags.elementAt(0)); } else { // more tags found -> add relations for (int tagCount = 0; tagCount < upperTags.size() - 1; tagCount++) { String upper = upperTags.elementAt(tagCount); String lower = upperTags.elementAt(tagCount + 1); // bookmark.addTagRelation(lower, upper); bookmarkPost.addTag(upper); bookmarkPost.addTag(lower); } } } else { /* * link found in "root-folder" -> no folder hierarchy * found * * check for "TAGS" attribute (common in del.icio.us * export) */ final Node tagNode = currentNode.getFirstChild().getAttributes().getNamedItem("tags"); if (tagNode != null) { /* * del.icio.us export tags are comma-separated */ final StringTokenizer token = new StringTokenizer(tagNode.getNodeValue(), ","); while (token.hasMoreTokens()) { bookmarkPost.addTag(token.nextToken()); } } else { // really no tags found -> set imported tag bookmarkPost.setTags(Collections.singleton(TagUtils.getEmptyTag())); } } bookmarkPost.setDate(today); bookmarkPost.setUser(user); bookmarkPost.addGroup(groupName); // descriptions are saved in a sibling of of a node // containing a link if (currentNode.getNextSibling() != null && "dd".equals(currentNode.getNextSibling().getNodeName())) { // bookmark.setExtended(currentNode.getNextSibling().getFirstChild().getNodeValue()); bookmarkPost.setDescription(currentNode.getNextSibling().getFirstChild().getNodeValue()); } posts.add(bookmarkPost); } } } }
From source file:com.afunms.system.manage.UserManager.java
/** * hostNode MonitorNodeDTO/*from www . j av a 2s . c o m*/ * * @param hostNode * @return */ public MonitorNodeDTO getMonitorNodeDTOByHostNode(HostNode hostNode) { SimpleDateFormat simpleDateFormat = new SimpleDateFormat("yyyy-MM-dd"); String date = simpleDateFormat.format(new Date()); String starttime = date + " 00:00:00"; String totime = date + " 23:59:59"; NumberFormat numberFormat = new DecimalFormat(); numberFormat.setMaximumFractionDigits(0); MonitorNodeDTO monitorNodeDTO = null; String ipAddress = hostNode.getIpAddress(); int nodeId = hostNode.getId(); String alias = hostNode.getAlias(); int category = hostNode.getCategory(); if (category == 1) { monitorNodeDTO = new MonitorNetDTO(); monitorNodeDTO.setCategory(""); } else if (category == 4) { monitorNodeDTO = new MonitorHostDTO(); monitorNodeDTO.setCategory(""); } else { monitorNodeDTO = new MonitorNetDTO(); monitorNodeDTO.setCategory(""); } // id monitorNodeDTO.setId(nodeId); // ip monitorNodeDTO.setIpAddress(ipAddress); // monitorNodeDTO.setAlias(alias); Host node = (Host) PollingEngine.getInstance().getNodeByID(nodeId); // if (node != null) { monitorNodeDTO.setStatus(node.getStatus() + ""); } else { monitorNodeDTO.setStatus("0"); } // monitorNodeDTO.setStatus(node.getAlarmlevel() + ""); String cpuValue = "0"; // cpu 0 String memoryValue = "0"; // memory 0 String inutilhdxValue = "0"; // inutilhdx 0 String oututilhdxValue = "0"; // oututilhdx 0 String pingValue = "0"; // ping 0 String eventListCount = ""; // eventListCount 0 String collectType = ""; // String cpuValueColor = "green"; // cpu String memoryValueColor = "green"; // memory String generalAlarm = "0"; // 0 String urgentAlarm = "0"; // 0 String seriousAlarm = "0"; // 0 double cpuValueDouble = 0; double memeryValueDouble = 0; Hashtable eventListSummary = new Hashtable(); Hashtable sharedata = ShareData.getSharedata(); Hashtable ipAllData = (Hashtable) sharedata.get(ipAddress); Hashtable allpingdata = ShareData.getPingdata(); if (ipAllData != null) { Vector cpuV = (Vector) ipAllData.get("cpu"); if (cpuV != null && cpuV.size() > 0) { CPUcollectdata cpu = (CPUcollectdata) cpuV.get(0); if (cpu != null && cpu.getThevalue() != null) { cpuValueDouble = Double.valueOf(cpu.getThevalue()); cpuValue = numberFormat.format(cpuValueDouble); } } Vector memoryVector = (Vector) ipAllData.get("memory"); int allmemoryvalue = 0; if (memoryVector != null && memoryVector.size() > 0) { for (int si = 0; si < memoryVector.size(); si++) { Memorycollectdata memorydata = (Memorycollectdata) memoryVector.elementAt(si); if (memorydata.getEntity().equalsIgnoreCase("Utilization")) { // // if // (memorydata.getSubentity().equalsIgnoreCase("PhysicalMemory")) // { // memeryValueDouble = memeryValueDouble + // Double.valueOf(memorydata.getThevalue()); // } if (category == 4 && memorydata.getSubentity().equalsIgnoreCase("PhysicalMemory")) {// memeryValueDouble = Double.valueOf(memorydata.getThevalue()); } if (category == 1 || category == 2 || category == 3) {// allmemoryvalue = allmemoryvalue + Integer.parseInt(memorydata.getThevalue()); if (si == memoryVector.size() - 1) { memeryValueDouble = allmemoryvalue / memoryVector.size(); } } } } memoryValue = numberFormat.format(memeryValueDouble); } Vector allutil = (Vector) ipAllData.get("allutilhdx"); if (allutil != null && allutil.size() == 3) { AllUtilHdx inutilhdx = (AllUtilHdx) allutil.get(0); inutilhdxValue = inutilhdx.getThevalue(); AllUtilHdx oututilhdx = (AllUtilHdx) allutil.get(1); oututilhdxValue = oututilhdx.getThevalue(); } } if (allpingdata != null) { Vector pingData = (Vector) allpingdata.get(ipAddress); if (pingData != null && pingData.size() > 0) { Pingcollectdata pingcollectdata = (Pingcollectdata) pingData.get(0); pingValue = pingcollectdata.getThevalue(); } } String count = ""; EventListDao eventListDao = new EventListDao(); try { if ("mysql".equalsIgnoreCase(SystemConstant.DBType)) { generalAlarm = eventListDao.getCountByWhere(" where nodeid='" + hostNode.getId() + "'" + " and level1='1' and recordtime>='" + starttime + "' and recordtime<='" + totime + "'"); urgentAlarm = eventListDao.getCountByWhere(" where nodeid='" + hostNode.getId() + "'" + " and level1='2' and recordtime>='" + starttime + "' and recordtime<='" + totime + "'"); seriousAlarm = eventListDao.getCountByWhere(" where nodeid='" + hostNode.getId() + "'" + " and level1='3' and recordtime>='" + starttime + "' and recordtime<='" + totime + "'"); } else if ("oracle".equalsIgnoreCase(SystemConstant.DBType)) { generalAlarm = eventListDao.getCountByWhere( " where nodeid=" + hostNode.getId() + "" + " and level1=1 and recordtime>=to_date('" + starttime + "','YYYY-MM-DD HH24:MI:SS') and recordtime<=to_date('" + totime + "','YYYY-MM-DD HH24:MI:SS')"); urgentAlarm = eventListDao.getCountByWhere( " where nodeid=" + hostNode.getId() + "" + " and level1=2 and recordtime>=to_date('" + starttime + "','YYYY-MM-DD HH24:MI:SS') and recordtime<=to_date('" + totime + "','YYYY-MM-DD HH24:MI:SS')"); seriousAlarm = eventListDao.getCountByWhere( " where nodeid=" + hostNode.getId() + "" + " and level1=3 and recordtime>=to_date('" + starttime + "','YYYY-MM-DD HH24:MI:SS') and recordtime<=to_date('" + totime + "','YYYY-MM-DD HH24:MI:SS')"); } } catch (Exception e) { e.printStackTrace(); } finally { eventListDao.close(); } eventListCount = count; eventListSummary.put("generalAlarm", generalAlarm); eventListSummary.put("urgentAlarm", urgentAlarm); eventListSummary.put("seriousAlarm", seriousAlarm); monitorNodeDTO.setEventListSummary(eventListSummary); if (SystemConstant.COLLECTTYPE_SNMP == hostNode.getCollecttype()) { collectType = "SNMP"; } else if (SystemConstant.COLLECTTYPE_PING == hostNode.getCollecttype()) { collectType = "PING"; } else if (SystemConstant.COLLECTTYPE_REMOTEPING == hostNode.getCollecttype()) { collectType = "REMOTEPING"; } else if (SystemConstant.COLLECTTYPE_SHELL == hostNode.getCollecttype()) { collectType = "SHELL"; } else if (SystemConstant.COLLECTTYPE_SSH == hostNode.getCollecttype()) { collectType = "SSH"; } else if (SystemConstant.COLLECTTYPE_TELNET == hostNode.getCollecttype()) { collectType = "TELNET"; } else if (SystemConstant.COLLECTTYPE_WMI == hostNode.getCollecttype()) { collectType = "WMI"; } // NodeMonitorDao nodeMonitorDao = new NodeMonitorDao(); // // List nodeMonitorList = null; // try { // nodeMonitorList = nodeMonitorDao.loadByNodeID(nodeId); // } catch (RuntimeException e) { // // TODO Auto-generated catch block // e.printStackTrace(); // } finally { // nodeMonitorDao.close(); // } // NodeUtil nodeutil = new NodeUtil(); NodeDTO dto = nodeutil.conversionToNodeDTO(node); cpuValueColor = this.computeColor( AgentalarmControlutil.GetAlarmlevel(monitorNodeDTO.getId() + "", dto.getType(), "cpu", "")); memoryValueColor = this.computeColor(AgentalarmControlutil.GetAlarmlevel(monitorNodeDTO.getId() + "", dto.getType(), "physicalmemory", "")); // if (nodeMonitorList != null) { // for (int j = 0; j < nodeMonitorList.size(); j++) { // NodeMonitor nodeMonitor = (NodeMonitor) nodeMonitorList.get(j); // // // // if ("cpu".equals(nodeMonitor.getCategory())) { // //cpuValueColor = this.computeColor(AgentalarmControlutil.GetAlarmlevel(monitorNodeDTO.getId()+"", "host", "cpu", "")); // // // } // // if ("memory".equals(nodeMonitor.getCategory())) { // // // // // } // //cpuValueColor="red"; // //memoryValueColor="red"; // // } // } monitorNodeDTO.setCpuValue(cpuValue); monitorNodeDTO.setMemoryValue(memoryValue); monitorNodeDTO.setInutilhdxValue(inutilhdxValue); monitorNodeDTO.setOututilhdxValue(oututilhdxValue); monitorNodeDTO.setPingValue(pingValue); monitorNodeDTO.setEventListCount(eventListCount); monitorNodeDTO.setCollectType(collectType); monitorNodeDTO.setCpuValueColor(cpuValueColor); monitorNodeDTO.setMemoryValueColor(memoryValueColor); return monitorNodeDTO; }
From source file:display.ANNFileFilter.java
License:asdf
Yanng() {
JPanel toolBars;/*from w w w . j av a 2 s . c o m*/
JMenuBar menuBar;
JToolBar utilBar, fileBar;
JButton toJava, runner, trainer, modify, getTraininger, inputer, newwer, saver, saveAser, loader, helper;
JMenu file;
final JMenu util;
JMenu help;
ImageIcon IJava, IRun, ITrain, IModify, INew, ISave, ILoad, IGetTrainingSet, IGetInput, ISaveAs;
//initialize main window
mainWindow = new JFrame("YANNG - Yet Another Neural Network (simulator) Generator");
mainWindow.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
mainWindow.setLayout(new BorderLayout());
mainWindow.setSize(675, 525);
mainWindow.setIconImage(new ImageIcon(ClassLoader.getSystemResource("display/icons/logo.png")).getImage());
loadingImage = new ImageIcon(ClassLoader.getSystemResource("display/icons/loading.gif"));
path = new Vector<String>();
net = new Vector<NeuralNetwork>();
oneNet = new Vector<JPanel>();
tabPanel = new Vector<JPanel>();
readOut = new Vector<JTextArea>();
readOutLocale = new Vector<JScrollPane>();
loadingBar = new Vector<JLabel>();
title = new Vector<JLabel>();
close = new Vector<JButton>();
netName = new Vector<StringBuffer>();
netKind = new Vector<StringBuffer>();
resultsPane = new JTabbedPane();
mainWindow.add(resultsPane);
toolBars = new JPanel();
toolBars.setLayout(new FlowLayout(FlowLayout.LEFT));
//create utilities toolbar with 3 buttons
utilBar = new JToolBar("Utilities");
IRun = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/running.png")).getImage()
.getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
ITrain = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/training.png")).getImage()
.getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
IModify = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/modifyNet.png"))
.getImage().getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
IGetTrainingSet = new ImageIcon(
new ImageIcon(ClassLoader.getSystemResource("display/icons/trainingSet.png")).getImage()
.getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
IGetInput = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/input.png")).getImage()
.getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
//set the icons/tooltips for the utilitiy bar
runner = new JButton(IRun);
runner.setToolTipText(
"<html>Run the Current Neural Network<br>Once Through with the Current Input</html>");
trainer = new JButton(ITrain);
trainer.setToolTipText(
"<html>Train the Network with the Current<br>Configuration and Training Set</html>");
modify = new JButton(IModify);
modify.setToolTipText("<html>Modify the Network<br>for Fun and Profit</html>");
getTraininger = new JButton(IGetTrainingSet);
getTraininger.setToolTipText("Get Training Set from File");
inputer = new JButton(IGetInput);
inputer.setToolTipText("Get Input Set from File");
utilBar.add(inputer);
utilBar.add(runner);
utilBar.add(getTraininger);
utilBar.add(trainer);
utilBar.add(modify);
//create file toolbar
fileBar = new JToolBar("file");
ISaveAs = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/saveAs.png")).getImage()
.getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
INew = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/new.png")).getImage()
.getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
ISave = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/save.png")).getImage()
.getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
ILoad = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/load.png")).getImage()
.getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
IJava = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/toJava.png")).getImage()
.getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
newwer = new JButton(INew);
newwer.setToolTipText("Create New Neural Network");
saver = new JButton(ISave);
saver.setToolTipText("Save Current Network Configuration");
saveAser = new JButton(ISaveAs);
saveAser.setToolTipText("Save Network As");
loader = new JButton(ILoad);
loader.setToolTipText("Load Network Configuration from File");
toJava = new JButton(IJava);
toJava.setToolTipText("Export Network to Java Project");
fileBar.add(newwer);
fileBar.add(loader);
fileBar.add(saver);
fileBar.add(saveAser);
fileBar.add(toJava);
toolBars.add(fileBar);
toolBars.add(utilBar);
mainWindow.add(toolBars, BorderLayout.NORTH);
//create a menubar with three menus on it
menuBar = new JMenuBar();
file = new JMenu("File");
util = new JMenu("Utilities");
help = new JMenu("Help");
//add menu items for file menu
load = new JMenuItem("Load Network Configuration");
newNet = new JMenuItem("New Network");
saveAs = new JMenuItem("Save Network As");
save = new JMenuItem("Save Current Configuration");
exportNet = new JMenuItem("Export Network to Java Project");
exportOutput = new JMenuItem("Export Output to Text File");
file.add(load);
file.add(newNet);
file.addSeparator();
file.add(saveAs);
file.add(save);
file.addSeparator();
file.add(exportNet);
file.add(exportOutput);
menuBar.add(file);
//add menu items for utilities menu
changeConfig = new JMenuItem("Modify Network Settings");
getInput = new JMenuItem("Get Input From File");
getTraining = new JMenuItem("Get Training Set From File");
run = new JMenuItem("Run");
train = new JMenuItem("Train");
getColorMap = new JMenuItem("View Color Map");
getColorMap.setVisible(false);
util.add(changeConfig);
util.addSeparator();
util.add(getInput);
util.add(getTraining);
util.addSeparator();
util.add(run);
util.add(train);
menuBar.add(util);
//add menu items for help menu
quickStart = new JMenuItem("Quick Start Guide");
searchHelp = new JMenuItem("Programming with Yanng");
about = new JMenuItem("License");
links = new JMenuItem("<html>Links to Resources<br>about Neural Networks</html>");
help.add(quickStart);
help.addSeparator();
help.add(searchHelp);
help.addSeparator();
help.add(about);
help.addSeparator();
help.add(links);
menuBar.add(help);
mainWindow.setJMenuBar(menuBar);
//opens the quickstart guide
quickStart.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
try {
File myFile = new File(URLDecoder
.decode(ClassLoader.getSystemResource("ann/quick-start.pdf").getFile(), "UTF-8"));
Desktop.getDesktop().open(myFile);
} catch (IOException ex) {
try {
Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/quick-start.pdf");
} catch (Exception e) {
JOptionPane.showMessageDialog(mainWindow,
"Your desktop is not supported by java,\ngo to yanng/src/ann/quick-start.pdf to view the technical manual.",
"Desktop not Supported", JOptionPane.ERROR_MESSAGE);
}
}
}
});
links.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
try {
File myFile = new File(
URLDecoder.decode(ClassLoader.getSystemResource("ann/links.pdf").getFile(), "UTF-8"));
Desktop.getDesktop().open(myFile);
} catch (IOException ex) {
try {
Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/links.pdf");
} catch (Exception e) {
JOptionPane.showMessageDialog(mainWindow,
"Your desktop is not supported by java,\ngo to yanng/src/ann/links.pdf to view the technical manual.",
"Desktop not Supported", JOptionPane.ERROR_MESSAGE);
}
}
}
});
//Displays license information
about.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
JTextArea x = new JTextArea("Copyright [2015] [Sam Findler and Michael Scott]\n" + "\n"
+ "Licensed under the Apache License, Version 2.0 (the \"License\");\n"
+ "you may not use this file except in compliance with the License.\n"
+ "You may obtain a copy of the License at\n" + "\n"
+ "http://www.apache.org/licenses/LICENSE-2.0\n" + "\n"
+ "Unless required by applicable law or agreed to in writing, software\n"
+ "distributed under the License is distributed on an \"AS IS\" BASIS,\n"
+ "WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n"
+ "See the License for the specific language governing permissions and\n"
+ "limitations under the License.");
JDialog aboutDialog = new JDialog(mainWindow, "License", true);
aboutDialog.setSize(500, 250);
aboutDialog.setLayout(new FlowLayout());
aboutDialog.add(x);
x.setEditable(false);
aboutDialog.setVisible(true);
}
});
//opens the more technical user guide
searchHelp.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
try {
File myFile = new File(URLDecoder
.decode(ClassLoader.getSystemResource("ann/technical-manual.pdf").getFile(), "UTF-8"));
Desktop.getDesktop().open(myFile);
} catch (IOException ex) {
try {
Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/technical-manual.pdf");
} catch (Exception e) {
JOptionPane.showMessageDialog(mainWindow,
"Your desktop is not supported by java,\ngo to yanng/src/ann/technical-manual.pdf to view the technical manual.",
"Desktop not Supported", JOptionPane.ERROR_MESSAGE);
}
}
}
});
//class trains the neural network in the background while the loading bar displays, then prints out the output/connections listings/average error to the readOut pane
class Trainer extends SwingWorker<NeuralNetwork, Object> {
protected NeuralNetwork doInBackground() {
net.get(resultsPane.getSelectedIndex()).trainNet();
setProgress(1);
return net.get(resultsPane.getSelectedIndex());
}
public void done() {
if (resultsPane.getTabCount() != 0
&& netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
if (Double.isNaN(net.get(resultsPane.getSelectedIndex()).getAverageError()))
JOptionPane.showMessageDialog(mainWindow, "Training Set Formatted Incorrectly",
"Formatting Error", JOptionPane.ERROR_MESSAGE);
else {
printConnections();
readOut.get(resultsPane.getSelectedIndex()).append(
"Results of Training " + netName.get(resultsPane.getSelectedIndex()) + ":\n\n");
printOutput();
readOut.get(resultsPane.getSelectedIndex()).append("Average Error = "
+ net.get(resultsPane.getSelectedIndex()).getAverageError() + "\n\n");
loadingBar.get(resultsPane.getSelectedIndex()).setVisible(false);
JOptionPane.showMessageDialog(mainWindow,
"<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
}
} else if (resultsPane.getTabCount() != 0
&& netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Untrained Map:\n");
printInitMap();
loadingBar.get(resultsPane.getSelectedIndex()).setVisible(false);
JOptionPane.showMessageDialog(mainWindow,
"<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
}
}
}
//starts the training class when train is pressed in the utilities menu
train.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (resultsPane.getTabCount() != 0) {
if (net.get(resultsPane.getSelectedIndex()).getTrainingSet() != null) {
loadingBar.get(resultsPane.getSelectedIndex()).setText(
"<html><font color = rgb(160,0,0)>Training</font> <font color = rgb(0,0,248)>net...</font></html>");
loadingBar.get(resultsPane.getSelectedIndex()).setVisible(true);
(thisTrainer = new Trainer()).execute();
} else
JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
JOptionPane.ERROR_MESSAGE);
}
else
JOptionPane.showMessageDialog(mainWindow, "Can't Train Nonexistent Neural Network",
"Existential Error", JOptionPane.ERROR_MESSAGE);
}
});
//associates the toolbar button with the jump rope guy with the training button on the utilities menu
trainer.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : train.getActionListeners()) {
a.actionPerformed(ae);
}
}
});
//runs through one set of inputs and prints the results to the readOut pane
run.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (resultsPane.getTabCount() != 0
&& netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
if (net.get(resultsPane.getSelectedIndex()).getInputSet() != null) {
net.get(resultsPane.getSelectedIndex()).runNet();
if (Double.isNaN(net.get(resultsPane.getSelectedIndex()).getAverageError()))
JOptionPane.showMessageDialog(mainWindow, "Training Set Formatted Incorrectly",
"Formatting Error", JOptionPane.ERROR_MESSAGE);
else {
readOut.get(resultsPane.getSelectedIndex()).append("Results of Running through Network "
+ netName.get(resultsPane.getSelectedIndex()) + ":\n\n");
printOutput();
System.out.println("Results:");
for (int i = 0; i < net.get(resultsPane.getSelectedIndex())
.getOutputSet().length; i++) {
System.out.println("\n Output of Input Vector " + i + ":");
for (int j = 0; j < net.get(resultsPane.getSelectedIndex())
.getOutputSet()[i].length; j++) {
System.out.println(" Output Node " + j + " = "
+ net.get(resultsPane.getSelectedIndex()).getOutputSet()[i][j]);
}
}
JOptionPane.showMessageDialog(mainWindow,
"<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
}
} else
JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
JOptionPane.ERROR_MESSAGE);
} else if (resultsPane.getTabCount() != 0
&& netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
if (net.get(resultsPane.getSelectedIndex()).getInputValues() != null) {
loadingBar.get(resultsPane.getSelectedIndex()).setText(
"<html><font color = rgb(160,0,0)>Training</font> <font color = rgb(0,0,248)>net...</font></html>");
loadingBar.get(resultsPane.getSelectedIndex()).setVisible(true);
(thisTrainer = new Trainer()).execute();
} else
JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
JOptionPane.ERROR_MESSAGE);
} else
JOptionPane.showMessageDialog(mainWindow, "Can't Run Nonexistent Neural Network",
"Existential Error", JOptionPane.ERROR_MESSAGE);
}
});
runner.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : run.getActionListeners()) {
a.actionPerformed(ae);
}
}
});
//the following code is for the getTraining button under utilities
getTrainingSet = new JFileChooser();
getTrainingSet.setFileFilter(new TrainingFileFilter());
getTraining.addActionListener(new ActionListener() {
//this method/class gets a training set (tsv/csv file) and parse it through the neural network. Kind of test that the file is formatted correctly, but if the data is wrong, there isn't much it can do.
public void actionPerformed(ActionEvent ae) {
if (resultsPane.getTabCount() != 0
&& netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
int result;
result = getTrainingSet.showOpenDialog(mainWindow);
if (result == JFileChooser.APPROVE_OPTION)
if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
|| getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
|| getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
if (net.get(resultsPane.getSelectedIndex())
.parseTrainingSet(getTrainingSet.getSelectedFile()))
JOptionPane.showMessageDialog(mainWindow,
"<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
"Formatting Warning", JOptionPane.WARNING_MESSAGE);
else
JOptionPane.showMessageDialog(mainWindow,
"File Mismatch with Network Configuration", "Correspondence Error",
JOptionPane.ERROR_MESSAGE);
else {
JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
JOptionPane.ERROR_MESSAGE);
}
else {
JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
JOptionPane.WARNING_MESSAGE);
}
} else if (resultsPane.getTabCount() != 0
&& netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
int result;
result = getTrainingSet.showOpenDialog(mainWindow);
if (result == JFileChooser.APPROVE_OPTION)
if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
|| getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
|| getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
if (net.get(resultsPane.getSelectedIndex())
.parseTrainingSet(getTrainingSet.getSelectedFile())) {
JOptionPane.showMessageDialog(mainWindow,
"<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
"Formatting Warning", JOptionPane.WARNING_MESSAGE);
readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Untrained Map:\n");
printInitMap();
} else
JOptionPane.showMessageDialog(mainWindow,
"File Mismatch with Network Configuration", "Correspondence Error",
JOptionPane.ERROR_MESSAGE);
else {
JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
JOptionPane.ERROR_MESSAGE);
}
else {
JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
JOptionPane.WARNING_MESSAGE);
}
} else {
JOptionPane.showMessageDialog(mainWindow, "Can't Train Nonexistent Neural Network",
"Existential Error", JOptionPane.ERROR_MESSAGE);
}
}
});
getTraininger.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : getTraining.getActionListeners()) {
a.actionPerformed(ae);
}
}
});
//this ends the getTraining section of the code
getInput.addActionListener(new ActionListener() {
//this method/class gets an input set (tsv/csv file) and parses it through the neural network. Somewhat tests that the file is formatted correctly, but cannot give a garuntee.
public void actionPerformed(ActionEvent ae) {
if (resultsPane.getTabCount() != 0) {
int result;
result = getTrainingSet.showOpenDialog(mainWindow);
if (result == JFileChooser.APPROVE_OPTION)
if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
|| getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
|| getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
if (net.get(resultsPane.getSelectedIndex())
.parseInputSet(getTrainingSet.getSelectedFile())) {
JOptionPane.showMessageDialog(mainWindow,
"<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
"Formatting Warning", JOptionPane.WARNING_MESSAGE);
if (netKind.get(resultsPane.getSelectedIndex()).toString()
.equals("Self-Organizing Map"))
printInitMap();
} else
JOptionPane.showMessageDialog(mainWindow,
"File Mismatch with Network Configuration", "Correspondence Error",
JOptionPane.ERROR_MESSAGE);
else
JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
JOptionPane.ERROR_MESSAGE);
else
JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
JOptionPane.WARNING_MESSAGE);
} else {
JOptionPane.showMessageDialog(mainWindow, "Can't train nonexistent network",
"Existential Error", JOptionPane.ERROR_MESSAGE);
}
}
});
//opens and displays a color map of a SOM
getColorMap.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (resultsPane.getTabCount() != 0) {
if (netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
MapNode[][] map;
map = net.get(resultsPane.getSelectedIndex()).getMapArray();
int lValue = net.get(resultsPane.getSelectedIndex()).getLatticeValue();
int inputDimensions = net.get(resultsPane.getSelectedIndex()).getInputDimensions();
int[][] colorValues = new int[(lValue * lValue)][3];
double dMax = net.get(resultsPane.getSelectedIndex()).getDataMax();
double dMin = net.get(resultsPane.getSelectedIndex()).getDataMin();
int count = 0;
for (int i = 0; i < lValue; i++) {
for (int j = 0; j < lValue; j++) {
for (int k = 0; k < 3; k++) {
Vector tempVec = map[i][j].getWeights();
if (inputDimensions % 3 == 0) {
colorValues[count][k] = Integer.parseInt(String.valueOf((Math.round(255
* (Double.parseDouble(String.valueOf(tempVec.elementAt(k))))))));
}
if (inputDimensions % 3 == 1) {
if (k == 0)
colorValues[count][k] = 0;
if (k == 1) {
colorValues[count][k] = Integer
.parseInt(String.valueOf((Math.round(255 * (Double
.parseDouble(String.valueOf(tempVec.elementAt(0))))))));
}
if (k == 2)
colorValues[count][k] = 0;
}
if (inputDimensions % 3 == 2) {
if (k == 2) {
colorValues[count][k] = 0;
} else
colorValues[count][k] = Integer
.parseInt(String.valueOf((Math.round(255 * (Double
.parseDouble(String.valueOf(tempVec.elementAt(k))))))));
}
}
count++;
}
}
JFrame frame = new JFrame();
frame.setTitle("Color Map");
frame.setPreferredSize(new Dimension(525, 500));
frame.add(new DrawPanel(colorValues, lValue));
frame.pack();
frame.setVisible(true);
}
else {
JOptionPane.showMessageDialog(mainWindow,
"This Feauture is only available for Self-Organizing Maps", "Not a Som Error",
JOptionPane.ERROR_MESSAGE);
}
} else {
JOptionPane.showMessageDialog(mainWindow, "Network does not exist", "Existential Error",
JOptionPane.ERROR_MESSAGE);
}
}
});
inputer.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : getInput.getActionListeners())
a.actionPerformed(ae);
}
});
getNet = new JFileChooser();
getNet.setFileFilter(new ANNFileFilter());
//saves the net, or opens save as dialog if net is not saved yet
save.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (resultsPane.getTabCount() != 0) {
if (!path.get(resultsPane.getSelectedIndex()).equals("")) {
net.get(resultsPane.getSelectedIndex())
.save(new File(path.get(resultsPane.getSelectedIndex())));
}
else {
for (ActionListener a : saveAs.getActionListeners()) {
a.actionPerformed(ae);
}
}
} else {
JOptionPane.showMessageDialog(mainWindow, "Can't save NonExistent Neural Network",
"Existential Error", JOptionPane.ERROR_MESSAGE);
}
}
});
saver.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : save.getActionListeners()) {
a.actionPerformed(ae);
}
}
});
//opens dialog for saving the net
saveAs.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (resultsPane.getTabCount() != 0) {
int result, override;
String tempName;
result = getNet.showSaveDialog(mainWindow);
if (result == JFileChooser.APPROVE_OPTION)
if ((new File(tempName = getNet.getSelectedFile().getName())).exists()
|| (new File(tempName + ".ffn")).exists() || (new File(tempName + ".som")).exists()
|| (new File(tempName + ".hfn")).exists()) {
override = JOptionPane.showConfirmDialog(mainWindow,
tempName + " already exists, do you want to override?", "File Exists",
JOptionPane.YES_NO_OPTION);
if (override == JOptionPane.YES_OPTION) {
if (net.get(resultsPane.getSelectedIndex()).save(getNet.getSelectedFile())) {
if (tempName.endsWith(".ffn") || tempName.endsWith(".som")) {
netName.set(resultsPane.getSelectedIndex(), new StringBuffer(tempName));
title.get(resultsPane.getSelectedIndex()).setText(tempName + " ");
} else if (netKind.get(resultsPane.getSelectedIndex()).toString()
.equals("Feed Forward Network")) {
netName.set(resultsPane.getSelectedIndex(),
new StringBuffer(tempName + ".ffn"));
title.get(resultsPane.getSelectedIndex()).setText(tempName + ".ffn ");
} else if (netKind.get(resultsPane.getSelectedIndex()).toString()
.equals("Self-Organizing Map")) {
netName.set(resultsPane.getSelectedIndex(),
new StringBuffer(tempName + ".som"));
title.get(resultsPane.getSelectedIndex()).setText(tempName + ".som ");
}
path.set(resultsPane.getSelectedIndex(), getNet.getSelectedFile().getPath());
} else
JOptionPane.showMessageDialog(mainWindow, "Could not save file", "File Error",
JOptionPane.ERROR_MESSAGE);
}
} else {
if (net.get(resultsPane.getSelectedIndex()).save(getNet.getSelectedFile())) {
if (tempName.endsWith(".ffn") || tempName.endsWith(".som")
|| tempName.endsWith(".hfn")) {
netName.set(resultsPane.getSelectedIndex(), new StringBuffer(tempName));
title.get(resultsPane.getSelectedIndex()).setText(tempName + " ");
} else if (netKind.get(resultsPane.getSelectedIndex()).toString()
.equals("Feed Forward Network")) {
netName.set(resultsPane.getSelectedIndex(),
new StringBuffer(tempName + ".ffn"));
title.get(resultsPane.getSelectedIndex()).setText(tempName + ".ffn ");
} else if (netKind.get(resultsPane.getSelectedIndex()).toString()
.equals("Self-Organizing Map")) {
netName.set(resultsPane.getSelectedIndex(),
new StringBuffer(tempName + ".som"));
title.get(resultsPane.getSelectedIndex()).setText(tempName + ".som ");
path.set(resultsPane.getSelectedIndex(), getNet.getSelectedFile().getPath());
}
} else
JOptionPane.showMessageDialog(mainWindow, "Could not save file", "File Error",
JOptionPane.ERROR_MESSAGE);
}
} else {
JOptionPane.showMessageDialog(mainWindow, "Nothing to Save", "Existetial Error",
JOptionPane.ERROR_MESSAGE);
}
}
});
saveAser.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : saveAs.getActionListeners()) {
a.actionPerformed(ae);
}
}
});
//loads a net
load.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
int result;
boolean test = true;
String tempName;
result = getNet.showOpenDialog(mainWindow);
if (result == JFileChooser.APPROVE_OPTION) {
tempName = getNet.getSelectedFile().getName();
for (StringBuffer names : netName) {
if (names.toString().equals(tempName))
test = false;
}
if (test != false) {
//creates and sets the network configuration
if (tempName.endsWith(".ffn")) {
net.add(new FullyConnectedFeedForwardNet());
}
if (tempName.endsWith(".som")) {
net.add(new SelfOrganizingMap());
}
if (net.get(openNets).load(getNet.getSelectedFile()))
try {
//adds a close button to the top corner of each tab
title.add(new JLabel(tempName + " "));
close.add(new JButton("X"));
close.get(openNets).setActionCommand(tempName);
close.get(openNets)
.setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
tabPanel.add(new JPanel(new GridBagLayout()));
tabPanel.get(openNets).setOpaque(false);
GridBagConstraints grid = new GridBagConstraints();
grid.fill = GridBagConstraints.HORIZONTAL;
grid.gridx = 0;
grid.gridy = 0;
grid.weightx = 1;
tabPanel.get(openNets).add(title.get(openNets), grid);
grid.gridx = 1;
grid.gridy = 0;
grid.weightx = 0;
tabPanel.get(openNets).add(close.get(openNets), grid);
//adds a loading bar
loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
loadingBar.get(openNets).setVisible(false);
path.add(getNet.getSelectedFile().getPath());
netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
netName.add(new StringBuffer(tempName));
oneNet.add(new JPanel());
oneNet.get(openNets).setLayout(new GridBagLayout());
GridBagConstraints constraints = new GridBagConstraints();
constraints.fill = GridBagConstraints.BOTH;
//creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
readOut.add(new JTextArea(""));
readOutLocale.add(new JScrollPane(readOut.get(openNets)));
readOut.get(openNets).setEditable(false);
constraints.gridx = 0;
constraints.gridy = 0;
constraints.weighty = 1.0;
constraints.weightx = 1.0;
constraints.gridwidth = 2;
constraints.ipady = 90;
oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
constraints.fill = GridBagConstraints.HORIZONTAL;
constraints.gridx = 0;
constraints.gridy = 1;
constraints.ipady = 0;
constraints.gridwidth = 2;
constraints.anchor = GridBagConstraints.PAGE_END;
//add everythign to the tabbed pane
oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));
//display the starting configuration of the network
readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
resultsPane.setSelectedIndex(openNets++);
if (tempName.endsWith(".ffn"))
printConnections();
if (tempName.endsWith(".som")) {
readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Map:\n");
printInitMap();
}
//unfortunately difficult way that I made to add the close button functionality to close a tab
//it works, but there has to be a better way to do this
close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
public void actionPerformed(final ActionEvent ae) {
int result;
result = 0;
for (StringBuffer names : netName) {
if (ae.getActionCommand().equals(names.toString())) {
result = JOptionPane.showConfirmDialog(createFFN,
"<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
"Close Network", JOptionPane.OK_CANCEL_OPTION);
resultsPane.setSelectedIndex(netName.indexOf(names));
}
}
if (result == JOptionPane.OK_OPTION) {
net.remove(resultsPane.getSelectedIndex());
oneNet.remove(resultsPane.getSelectedIndex());
readOutLocale.remove(resultsPane.getSelectedIndex());
readOut.remove(resultsPane.getSelectedIndex());
loadingBar.remove(resultsPane.getSelectedIndex());
tabPanel.remove(resultsPane.getSelectedIndex());
title.remove(resultsPane.getSelectedIndex());
close.remove(resultsPane.getSelectedIndex());
netName.remove(resultsPane.getSelectedIndex());
resultsPane.remove(resultsPane.getSelectedIndex());
openNets--;
}
}
});
} catch (Error e) {
JOptionPane.showMessageDialog(mainWindow, "File Formatted Incorrectly",
"Formatting Error", JOptionPane.ERROR_MESSAGE);
}
else {
//if file was unable to load, remove the newly created neural network and display an error message
net.remove(openNets);
JOptionPane.showMessageDialog(mainWindow, "File Formatted Incorrectly",
"Formatting Error", JOptionPane.ERROR_MESSAGE);
}
}
else {
JOptionPane.showMessageDialog(mainWindow, "File Already Open", "Duality Error",
JOptionPane.ERROR_MESSAGE);
}
}
}
});
//associates the load toolbar button with load from the file menu
loader.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : load.getActionListeners())
a.actionPerformed(ae);
}
});
textFileChooser = new JFileChooser();
textFileChooser.setFileFilter(new TextFileFilter());
//exports all text from readout to a text file
exportOutput.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (resultsPane.getTabCount() != 0) {
int result;
result = textFileChooser.showSaveDialog(mainWindow);
if (result == JFileChooser.APPROVE_OPTION) {
if (textFileChooser.getSelectedFile().exists()
|| (new File(textFileChooser.getSelectedFile().getPath() + ".txt")).exists()) {
result = JOptionPane.showConfirmDialog(mainWindow,
"The File you have selected already Exists, do you want to Overwrite it?",
"File Exits", JOptionPane.YES_NO_OPTION);
if (result == JOptionPane.YES_OPTION) {
try {
if (textFileChooser.getSelectedFile().getPath().endsWith(".txt"))
FileUtils.writeStringToFile(textFileChooser.getSelectedFile(),
readOut.get(resultsPane.getSelectedIndex()).getText());
else
FileUtils.writeStringToFile(
new File(textFileChooser.getSelectedFile().getPath() + ".txt"),
readOut.get(resultsPane.getSelectedIndex()).getText());
JOptionPane.showMessageDialog(mainWindow, "Succesfully wrote readout to file");
} catch (Exception e) {
JOptionPane.showMessageDialog(mainWindow, "Could not write to file", "Error",
JOptionPane.ERROR_MESSAGE);
}
}
} else {
try {
if (textFileChooser.getSelectedFile().getPath().endsWith(".txt"))
FileUtils.writeStringToFile(textFileChooser.getSelectedFile(),
readOut.get(resultsPane.getSelectedIndex()).getText());
else
FileUtils.writeStringToFile(
new File(textFileChooser.getSelectedFile().getPath() + ".txt"),
readOut.get(resultsPane.getSelectedIndex()).getText());
JOptionPane.showMessageDialog(mainWindow, "Succesfully wrote readout to file");
} catch (Exception e) {
JOptionPane.showMessageDialog(mainWindow, "Could not write to file", "Error",
JOptionPane.ERROR_MESSAGE);
}
}
}
} else {
JOptionPane.showMessageDialog(mainWindow, "Nothing to Export", "Existential Error",
JOptionPane.ERROR_MESSAGE);
}
}
});
projectFileChooser = new JFileChooser();
projectFileChooser.setFileFilter(new ProjectFileFilter());
//exports a neural network to a java/android project
exportNet.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
int result, override, override2;
String tempName;
String templateFile;
String directory;
String path;
if (resultsPane.getTabCount() != 0) {
result = projectFileChooser.showSaveDialog(mainWindow);
if (result == JFileChooser.APPROVE_OPTION) {
path = projectFileChooser.getSelectedFile().getPath();
directory = projectFileChooser.getSelectedFile().getPath().substring(0,
projectFileChooser.getSelectedFile().getPath().lastIndexOf(File.separator));
tempName = projectFileChooser.getSelectedFile().getName();
if (projectFileChooser.getSelectedFile().exists()
|| (new File(directory, tempName + ".java")).exists()) {
override = JOptionPane.showConfirmDialog(mainWindow,
"Java Class File" + tempName + " already exists, do you want to overwrite it?",
"File Exists", JOptionPane.YES_NO_OPTION);
if (override == JOptionPane.YES_OPTION) {
try {
if (!(new File(directory, "ann")).exists())
FileUtils.copyDirectoryToDirectory(
FileUtils.toFile(ClassLoader.getSystemResource("ann/")),
new File(directory));
if (netKind.get(resultsPane.getSelectedIndex()).toString()
.equals("Feed Forward Network")) {
templateFile = FileUtils.readFileToString(FileUtils
.toFile(ClassLoader.getSystemResource("ann/FFNTemplate.txt")));
templateFile = templateFile.replaceAll("yourpackagename",
(new File(directory)).getName());
templateFile = templateFile.replaceAll("YourProjectName",
projectFileChooser.getSelectedFile().getName());
if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".ffn"))
templateFile = templateFile.replaceAll("networkName",
(new File(directory)).getName() + File.separator + netName
.get(resultsPane.getSelectedIndex()).toString());
else
templateFile = templateFile.replaceAll("networkName",
(new File(directory)).getName() + File.separator
+ netName.get(resultsPane.getSelectedIndex()).toString()
+ ".ffn");
if (path.indexOf('.') > 0) {
FileUtils.writeStringToFile(
new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
templateFile);
} else
FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
if ((new File(directory,
(tempName = netName.get(resultsPane.getSelectedIndex())
.toString()))).exists()
|| (new File(directory, tempName + ".ffn")).exists()) {
override2 = JOptionPane.showConfirmDialog(mainWindow,
"Neural Network " + tempName
+ " already exists, do you want to overwrite it?",
"File Exists", JOptionPane.YES_NO_OPTION);
if (override2 == JOptionPane.YES_OPTION)
if (net.get(resultsPane.getSelectedIndex())
.save(new File(directory + File.separator + tempName))) {
JOptionPane.showMessageDialog(mainWindow, "Network Exported to "
+ (new File(directory)).getName());
} else {
JOptionPane.showMessageDialog(mainWindow,
"Couldn't save neural network to file, the rest of the project is exported",
"Write Error", JOptionPane.ERROR_MESSAGE);
}
} else {
if (net.get(resultsPane.getSelectedIndex())
.save(new File(directory + File.separator + tempName))) {
JOptionPane.showMessageDialog(mainWindow,
"Network Exported to " + (new File(directory)).getName());
} else {
JOptionPane.showMessageDialog(mainWindow,
"Couldn't save neural network to file, the rest of the project is exported",
"Write Error", JOptionPane.ERROR_MESSAGE);
}
}
} else if (netKind.get(resultsPane.getSelectedIndex()).toString()
.equals("Self-Organizing Map")) {
templateFile = FileUtils.readFileToString(FileUtils
.toFile(ClassLoader.getSystemResource("ann/SOMTemplate.txt")));
templateFile = templateFile.replaceAll("yourpackagename",
(new File(directory)).getName());
templateFile = templateFile.replaceAll("YourProjectName",
projectFileChooser.getSelectedFile().getName());
if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".som"))
templateFile = templateFile.replaceAll("networkName",
(new File(directory)).getName() + File.separator + netName
.get(resultsPane.getSelectedIndex()).toString());
else
templateFile = templateFile.replaceAll("networkName",
(new File(directory)).getName() + File.separator
+ netName.get(resultsPane.getSelectedIndex()).toString()
+ ".som");
if (path.indexOf('.') > 0) {
FileUtils.writeStringToFile(
new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
templateFile);
} else
FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
if ((new File(directory,
(tempName = netName.get(resultsPane.getSelectedIndex())
.toString()))).exists()
|| (new File(directory, tempName + ".som")).exists()) {
override2 = JOptionPane.showConfirmDialog(mainWindow,
"Neural Network " + tempName
+ " already exists, do you want to overwrite it?",
"File Exists", JOptionPane.YES_NO_OPTION);
if (override2 == JOptionPane.YES_OPTION)
if (net.get(resultsPane.getSelectedIndex())
.save(new File(directory + File.separator + tempName))) {
JOptionPane.showMessageDialog(mainWindow, "Network Exported to "
+ (new File(directory)).getName());
} else {
JOptionPane.showMessageDialog(mainWindow,
"Couldn't save neural network to file, the rest of the project is exported",
"Write Error", JOptionPane.ERROR_MESSAGE);
}
} else {
if (net.get(resultsPane.getSelectedIndex())
.save(new File(directory + File.separator + tempName))) {
JOptionPane.showMessageDialog(mainWindow,
"Network Exported to " + (new File(directory)).getName());
} else {
JOptionPane.showMessageDialog(mainWindow,
"Couldn't save neural network to file, the rest of the project is exported",
"Write Error", JOptionPane.ERROR_MESSAGE);
}
}
}
} catch (IOException io) {
System.out.println(io);
}
}
} else {
try {
if (!(new File(directory, "ann")).exists())
FileUtils.copyDirectoryToDirectory(
FileUtils.toFile(ClassLoader.getSystemResource("ann/")),
new File(directory));
if (netKind.get(resultsPane.getSelectedIndex()).toString()
.equals("Feed Forward Network")) {
templateFile = FileUtils.readFileToString(
FileUtils.toFile(ClassLoader.getSystemResource("ann/FFNTemplate.txt")));
templateFile = templateFile.replaceAll("yourpackagename",
(new File(directory)).getName());
templateFile = templateFile.replaceAll("YourProjectName",
projectFileChooser.getSelectedFile().getName());
if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".ffn"))
templateFile = templateFile.replaceAll("networkName",
(new File(directory)).getName() + File.separator
+ netName.get(resultsPane.getSelectedIndex()).toString());
else
templateFile = templateFile.replaceAll("networkName",
(new File(directory)).getName() + File.separator
+ netName.get(resultsPane.getSelectedIndex()).toString()
+ ".ffn");
if (path.indexOf('.') > 0) {
FileUtils.writeStringToFile(
new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
templateFile);
} else
FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
if ((new File(directory + File.separator
+ (tempName = netName.get(resultsPane.getSelectedIndex()).toString())))
.exists()
|| (new File(directory + File.separator + tempName + ".ffn"))
.exists()) {
override2 = JOptionPane.showConfirmDialog(mainWindow,
"Neural Network " + tempName
+ " already exists, do you want to overwrite it?",
"File Exists", JOptionPane.YES_NO_OPTION);
if (override2 == JOptionPane.YES_OPTION)
if (net.get(resultsPane.getSelectedIndex())
.save(new File(directory + File.separator + tempName))) {
JOptionPane.showMessageDialog(mainWindow,
"Network Exported to " + (new File(directory)).getName());
} else {
JOptionPane.showMessageDialog(mainWindow,
"Couldn't save neural network to file, the rest of the project is exported",
"Write Error", JOptionPane.ERROR_MESSAGE);
}
} else {
if (net.get(resultsPane.getSelectedIndex())
.save(new File(directory + File.separator + tempName))) {
JOptionPane.showMessageDialog(mainWindow,
"Network Exported to " + (new File(directory)).getName());
} else {
JOptionPane.showMessageDialog(mainWindow,
"Couldn't save neural network to file, the rest of the project is exported",
"Write Error", JOptionPane.ERROR_MESSAGE);
}
}
} else if (netKind.get(resultsPane.getSelectedIndex()).toString()
.equals("Self-Organizing Map")) {
templateFile = FileUtils.readFileToString(
FileUtils.toFile(ClassLoader.getSystemResource("ann/SOMTemplate.txt")));
templateFile = templateFile.replaceAll("yourpackagename",
(new File(directory)).getName());
templateFile = templateFile.replaceAll("YourProjectName",
projectFileChooser.getSelectedFile().getName());
if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".som"))
templateFile = templateFile.replaceAll("networkName",
(new File(directory)).getName() + File.separator
+ netName.get(resultsPane.getSelectedIndex()).toString());
else
templateFile = templateFile.replaceAll("networkName",
(new File(directory)).getName() + File.separator
+ netName.get(resultsPane.getSelectedIndex()).toString()
+ ".som");
if (path.indexOf('.') > 0) {
FileUtils.writeStringToFile(
new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
templateFile);
} else
FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
if ((new File(directory,
(tempName = netName.get(resultsPane.getSelectedIndex()).toString())))
.exists()
|| (new File(directory, tempName + ".som")).exists()) {
override2 = JOptionPane.showConfirmDialog(mainWindow,
"Neural Network " + tempName
+ " already exists, do you want to overwrite it?",
"File Exists", JOptionPane.YES_NO_OPTION);
if (override2 == JOptionPane.YES_OPTION)
if (net.get(resultsPane.getSelectedIndex())
.save(new File(directory + File.separator + tempName))) {
JOptionPane.showMessageDialog(mainWindow,
"Network Exported to " + (new File(directory)).getName());
} else {
JOptionPane.showMessageDialog(mainWindow,
"Couldn't save neural network to file, the rest of the project is exported",
"Write Error", JOptionPane.ERROR_MESSAGE);
}
} else {
if (net.get(resultsPane.getSelectedIndex())
.save(new File(directory + File.separator + tempName))) {
JOptionPane.showMessageDialog(mainWindow,
"Network Exported to " + (new File(directory)).getName());
} else {
JOptionPane.showMessageDialog(mainWindow,
"Couldn't save neural network to file, the rest of the project is exported",
"Write Error", JOptionPane.ERROR_MESSAGE);
}
}
}
} catch (IOException io) {
System.out.println(io);
}
}
}
} else {
JOptionPane.showMessageDialog(mainWindow, "Can't Export NonExistent Neural Network",
"Existential Error", JOptionPane.ERROR_MESSAGE);
}
}
});
toJava.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : exportNet.getActionListeners())
a.actionPerformed(ae);
}
});
//settings menu
changeConfig.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (resultsPane.getTabCount() != 0
&& netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
modifyFFNDialog = new JDialog(mainWindow, "Network Settings", true);
modifyFFNDialog.setSize(500, 500);
modifyFFNDialog.setLayout(new GridBagLayout());
GridBagConstraints asdf = new GridBagConstraints();
asdf.gridwidth = 5;
asdf.gridheight = 1;
asdf.gridx = 0;
asdf.gridy = 0;
asdf.fill = GridBagConstraints.HORIZONTAL;
modifyFFNDialog.add(new JSeparator(), asdf);
asdf.gridwidth = 5;
asdf.gridheight = 15;
asdf.weightx = 1.0;
asdf.weighty = 1.0;
asdf.gridx = 0;
asdf.gridy = 1;
asdf.fill = GridBagConstraints.BOTH;
settings = new JTextArea();
settings.setEditable(false);
settings.setBorder(BorderFactory.createEtchedBorder());
modifyFFNDialog.add(settings, asdf);
asdf.fill = GridBagConstraints.HORIZONTAL;
asdf.gridwidth = 5;
asdf.gridheight = 1;
asdf.gridx = 0;
asdf.gridy = 16;
modifyFFNDialog.add(new JSeparator(), asdf);
asdf.gridwidth = 2;
asdf.gridx = 7;
asdf.gridy = 0;
modifyFFNDialog.add(new JSeparator(), asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridx = 7;
asdf.gridy = 1;
learningRateL = new JLabel("Set Learning Rate:");
modifyFFNDialog.add(learningRateL, asdf);
asdf.gridx = 7;
asdf.gridy = 2;
asdf.fill = GridBagConstraints.HORIZONTAL;
learningRateTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
learningRateTF.setText("");
modifyFFNDialog.add(learningRateTF, asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridx = 7;
asdf.gridy = 3;
momentumL = new JLabel("Set Momentum:");
modifyFFNDialog.add(momentumL, asdf);
asdf.gridx = 7;
asdf.gridy = 4;
asdf.fill = GridBagConstraints.HORIZONTAL;
momentumTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
momentumTF.setText("");
modifyFFNDialog.add(momentumTF, asdf);
asdf.gridx = 7;
asdf.gridy = 5;
modifyFFNDialog.add(new JSeparator(), asdf);
asdf.fill = GridBagConstraints.NONE;
/*asdf.gridwidth = 2;
asdf.gridheight = 1;
asdf.gridx = 7;
asdf.gridy = 6;
setNoise = new JLabel("Use Noise: ");
modifyFFNDialog.add(setNoise, asdf);
asdf.gridx = 7;
asdf.gridy = 7;
asdf.gridwidth = 1;
noiseOn = new JRadioButton("yes");
noiseOff = new JRadioButton("no");
noiseGroup = new ButtonGroup();
noiseGroup.add(noiseOn);
noiseGroup.add(noiseOff);
modifyFFNDialog.add(noiseOn,asdf);
asdf.gridx = 8;
asdf.gridy = 7;
modifyFFNDialog.add(noiseOff,asdf);
asdf.gridx = 7;
asdf.gridy = 8;
asdf.gridwidth = 2;
setNoiseRange = new JButton("Set Noise Range");
modifyFFNDialog.add(setNoiseRange,asdf);
asdf.gridx = 7;
asdf.gridy = 9;
setNoiseTiming = new JButton("Set Noise Timing");
modifyFFNDialog.add(setNoiseTiming,asdf);*/
asdf.gridx = 7;
asdf.gridy = 10;
asdf.fill = GridBagConstraints.HORIZONTAL;
modifyFFNDialog.add(new JSeparator(), asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridx = 7;
asdf.gridy = 11;
setTrainingStyle = new JLabel("Set Training Style:");
modifyFFNDialog.add(setTrainingStyle, asdf);
asdf.gridx = 7;
asdf.gridy = 12;
asdf.gridwidth = 1;
batchOn = new JRadioButton("batch");
onlineOn = new JRadioButton("online");
batchGroup = new ButtonGroup();
batchGroup.add(batchOn);
batchGroup.add(onlineOn);
modifyFFNDialog.add(batchOn, asdf);
asdf.gridx = 8;
modifyFFNDialog.add(onlineOn, asdf);
asdf.gridx = 7;
asdf.gridy = 13;
asdf.gridwidth = 2;
asdf.fill = GridBagConstraints.HORIZONTAL;
modifyFFNDialog.add(new JSeparator(), asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridx = 7;
asdf.gridy = 14;
modifyBiases = new JButton("Modify Biases");
modifyFFNDialog.add(modifyBiases, asdf);
asdf.gridx = 7;
asdf.gridy = 15;
trainingCompletionButton = new JButton("Modify End Condition");
modifyFFNDialog.add(trainingCompletionButton, asdf);
asdf.fill = GridBagConstraints.HORIZONTAL;
asdf.gridy = 16;
modifyFFNDialog.add(new JSeparator(), asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridwidth = 1;
asdf.gridx = 3;
asdf.gridy = 17;
asdf.anchor = GridBagConstraints.PAGE_END;
modifyFFN = new JButton("OK");
modifyFFNDialog.add(modifyFFN, asdf);
asdf.gridx = 7;
cancelModifyFFN = new JButton("Cancel");
modifyFFNDialog.add(cancelModifyFFN, asdf);
settings.setText("");
settings.append(
"\n\n\n\nLearning Rate: " + net.get(resultsPane.getSelectedIndex()).getLearningRate());
settings.append("\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
settings.append("\n\nTraining Style: ");
if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
settings.append("batch");
batchOn.setSelected(true);
} else {
settings.append("online");
onlineOn.setSelected(true);
}
settings.append("\n\nTraining End Condition: ");
if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
settings.append("Iterative");
settings.append(
"\n\nIterations: " + net.get(resultsPane.getSelectedIndex()).getIterations());
} else {
settings.append("Ideal Error");
settings.append(
"\n\nIdeal Error: " + net.get(resultsPane.getSelectedIndex()).getIdealError());
}
//expiremental feature, needs work on the back end to be properly implemented
modifyBiases.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
JButton addBiases, removeBiases;
biasesDialog = new JDialog(modifyFFNDialog, "Set Biases");
biasesDialog.setSize(200, 46);
biasesDialog.setLayout(new GridLayout(2, 1));
addBiases = new JButton("Add Bias");
removeBiases = new JButton("Remove Bias");
biasesDialog.add(addBiases);
biasesDialog.add(removeBiases);
addBiases.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
JLabel howManyBiasLayersLabel, whatBiasNodeLabel, whatBiasValueLabel;
final JFormattedTextField howManyBiasLayers, whatBiasNode, whatBiasValue;
JButton addBiasOK, addBiasCancel;
biasesDialog.setVisible(false);
addBiasDialog = new JDialog(modifyFFNDialog, "Add Bias");
addBiasDialog.setSize(756, 90);
addBiasDialog.setLayout(new GridLayout(4, 2));
howManyBiasLayersLabel = new JLabel("What Layer will get the Bias?");
howManyBiasLayers = new JFormattedTextField(
new NumberFormatter(NumberFormat.getIntegerInstance()));
whatBiasNodeLabel = new JLabel("Which Node will get the Bias?");
whatBiasNode = new JFormattedTextField(
new NumberFormatter(NumberFormat.getIntegerInstance()));
whatBiasValueLabel = new JLabel("What Value will the Bias have?");
whatBiasValue = new JFormattedTextField(
new NumberFormatter(NumberFormat.getInstance()));
addBiasOK = new JButton("OK");
addBiasCancel = new JButton("Cancel");
addBiasDialog.add(howManyBiasLayersLabel);
addBiasDialog.add(howManyBiasLayers);
addBiasDialog.add(whatBiasNodeLabel);
addBiasDialog.add(whatBiasNode);
addBiasDialog.add(whatBiasValueLabel);
addBiasDialog.add(whatBiasValue);
addBiasDialog.add(addBiasOK);
addBiasDialog.add(addBiasCancel);
addBiasOK.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (!howManyBiasLayers.getText().equals("")
&& !whatBiasNode.getText().equals("")
&& !whatBiasValue.getText().equals("")) {
addBiasDialog.setVisible(false);
if (net.get(resultsPane.getSelectedIndex()).addBias(
Integer.parseInt(howManyBiasLayers.getText()) - 1,
Integer.parseInt(whatBiasNode.getText()) - 1,
Double.parseDouble(whatBiasValue.getText()))) {
} else {
JOptionPane.showMessageDialog(modifyFFNDialog,
"Existential Error", "Invalid Node for Bias",
JOptionPane.ERROR_MESSAGE);
}
} else {
JOptionPane.showMessageDialog(modifyFFNDialog, "Form Error",
"Form not completed", JOptionPane.ERROR_MESSAGE);
}
}
});
addBiasCancel.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
addBiasDialog.setVisible(false);
}
});
addBiasDialog.setVisible(true);
}
});
removeBiases.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
JLabel howManyBiasLayersLabel, whatBiasNodeLabel;
final JFormattedTextField howManyBiasLayers, whatBiasNode;
JButton addBiasOK, addBiasCancel;
biasesDialog.setVisible(false);
removeBiasDialog = new JDialog(modifyFFNDialog, "Remove Bias");
removeBiasDialog.setSize(756, 90);
removeBiasDialog.setLayout(new GridLayout(3, 2));
howManyBiasLayersLabel = new JLabel("What Layer will lose the Bias?");
howManyBiasLayers = new JFormattedTextField(
new NumberFormatter(NumberFormat.getIntegerInstance()));
whatBiasNodeLabel = new JLabel("Which Node will get the Bias?");
whatBiasNode = new JFormattedTextField(
new NumberFormatter(NumberFormat.getIntegerInstance()));
addBiasOK = new JButton("OK");
addBiasCancel = new JButton("Cancel");
removeBiasDialog.add(howManyBiasLayersLabel);
removeBiasDialog.add(howManyBiasLayers);
removeBiasDialog.add(whatBiasNodeLabel);
removeBiasDialog.add(whatBiasNode);
removeBiasDialog.add(addBiasOK);
removeBiasDialog.add(addBiasCancel);
addBiasOK.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (!howManyBiasLayers.getText().equals("")
&& !whatBiasNode.getText().equals("")) {
addBiasDialog.setVisible(false);
if (net.get(resultsPane.getSelectedIndex()).removeBias(
Integer.parseInt(howManyBiasLayers.getText()) - 1,
Integer.parseInt(whatBiasNode.getText()) - 1)) {
} else {
JOptionPane.showMessageDialog(modifyFFNDialog,
"Existential Error", "Invalid Node for Bias",
JOptionPane.ERROR_MESSAGE);
}
} else {
JOptionPane.showMessageDialog(modifyFFNDialog, "Form Error",
"Form not completed", JOptionPane.ERROR_MESSAGE);
}
}
});
addBiasCancel.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
addBiasDialog.setVisible(false);
}
});
removeBiasDialog.setVisible(true);
}
});
biasesDialog.setVisible(true);
}
});
trainingCompletionButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
final JDialog iterationsDialog;
JLabel numberOfIterationsLabel;
final JFormattedTextField numberOfIterations;
JButton iterationsOK, iterationsCancel;
iterationsDialog = new JDialog(modifyFFNDialog, "Set Iterations");
iterationsDialog.setSize(765, 75);
iterationsDialog.setLayout(new GridLayout(2, 2));
numberOfIterationsLabel = new JLabel("How Many Iterations do you want to Train?");
numberOfIterations = new JFormattedTextField(
new NumberFormatter(NumberFormat.getIntegerInstance()));
iterationsOK = new JButton("OK");
iterationsCancel = new JButton("Cancel");
iterationsDialog.add(numberOfIterationsLabel);
iterationsDialog.add(numberOfIterations);
iterationsDialog.add(iterationsOK);
iterationsDialog.add(iterationsCancel);
iterationsOK.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (!numberOfIterations.getText().equals("")) {
iterationsDialog.setVisible(false);
if (net.get(resultsPane.getSelectedIndex())
.setIterations(Integer.parseInt(numberOfIterations.getText()))) {
settings.setText("");
settings.append("\n\n\n\nLearning Rate: "
+ net.get(resultsPane.getSelectedIndex()).getLearningRate());
settings.append("\n\nMomentum: "
+ net.get(resultsPane.getSelectedIndex()).getMomentum());
settings.append("\n\nTraining Style: ");
if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
settings.append("batch");
batchOn.setSelected(true);
} else {
settings.append("online");
onlineOn.setSelected(true);
}
settings.append("\n\nTraining End Condition: ");
if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
settings.append("Iterative");
settings.append("\n\nIterations: "
+ net.get(resultsPane.getSelectedIndex()).getIterations());
} else {
settings.append("Ideal Error");
settings.append("\n\nIdeal Error: "
+ net.get(resultsPane.getSelectedIndex()).getIdealError());
}
modifyFFNDialog.setVisible(true);
} else {
JOptionPane.showMessageDialog(modifyFFNDialog,
"Invalid Number of Iterations", "Math Error",
JOptionPane.ERROR_MESSAGE);
}
} else {
JOptionPane.showMessageDialog(iterationsDialog, "Field not filled out",
"Form Error", JOptionPane.ERROR_MESSAGE);
}
}
});
iterationsCancel.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
iterationsDialog.setVisible(false);
}
});
iterationsDialog.setVisible(true);
}
});
modifyFFN.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (!learningRateTF.getText().equals("")) {
net.get(resultsPane.getSelectedIndex())
.setLearningRate(Double.parseDouble(learningRateTF.getText()));
learningRateTF.setText("");
}
if (!momentumTF.getText().equals("")) {
net.get(resultsPane.getSelectedIndex())
.setMomentum(Double.parseDouble(momentumTF.getText()));
momentumTF.setText("");
}
if (batchOn.isSelected()) {
net.get(resultsPane.getSelectedIndex()).setBatchvOnline(true);
} else {
net.get(resultsPane.getSelectedIndex()).setBatchvOnline(false);
}
modifyFFNDialog.setVisible(false);
}
});
learningRateTF.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (learningRateTF.getText() != "") {
net.get(resultsPane.getSelectedIndex())
.setLearningRate(Double.parseDouble(learningRateTF.getText()));
}
settings.setText("");
settings.append("\n\n\n\nLearning Rate: "
+ net.get(resultsPane.getSelectedIndex()).getLearningRate());
settings.append(
"\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
settings.append("\n\nTraining Style: ");
if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
settings.append("batch");
batchOn.setSelected(true);
} else {
settings.append("online");
onlineOn.setSelected(true);
}
settings.append("\n\nTraining End Condition: ");
if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
settings.append("Iterative");
settings.append("\n\nIterations: "
+ net.get(resultsPane.getSelectedIndex()).getIterations());
} else {
settings.append("Ideal Error");
settings.append("\n\nIdeal Error: "
+ net.get(resultsPane.getSelectedIndex()).getIdealError());
}
modifyFFNDialog.setVisible(true);
}
});
momentumTF.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (momentumTF.getText() != "") {
net.get(resultsPane.getSelectedIndex())
.setMomentum(Double.parseDouble(momentumTF.getText()));
}
settings.setText("");
settings.append("\n\n\n\nLearning Rate: "
+ net.get(resultsPane.getSelectedIndex()).getLearningRate());
settings.append(
"\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
settings.append("\n\nTraining Style: ");
if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
settings.append("batch");
batchOn.setSelected(true);
} else {
settings.append("online");
onlineOn.setSelected(true);
}
settings.append("\n\nTraining End Condition: ");
if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
settings.append("Iterative");
settings.append("\n\nIterations: "
+ net.get(resultsPane.getSelectedIndex()).getIterations());
} else {
settings.append("Ideal Error");
settings.append("\n\nIdeal Error: "
+ net.get(resultsPane.getSelectedIndex()).getIdealError());
}
modifyFFNDialog.setVisible(true);
}
});
cancelModifyFFN.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
modifyFFNDialog.setVisible(false);
}
});
modifyFFNDialog.setVisible(true);
}
if (resultsPane.getTabCount() != 0
&& netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
modifySOMDialog = new JDialog(mainWindow, "Network Settings", true);
modifySOMDialog.setSize(500, 400);
modifySOMDialog.setLayout(new GridBagLayout());
GridBagConstraints asdf = new GridBagConstraints();
asdf.gridwidth = 5;
asdf.gridheight = 1;
asdf.gridx = 0;
asdf.gridy = 0;
asdf.fill = GridBagConstraints.HORIZONTAL;
modifySOMDialog.add(new JSeparator(), asdf);
asdf.gridwidth = 5;
asdf.gridheight = 15;
asdf.weightx = 1.0;
asdf.weighty = 1.0;
asdf.gridx = 0;
asdf.gridy = 1;
asdf.fill = GridBagConstraints.BOTH;
settings = new JTextArea();
settings.setEditable(false);
settings.setBorder(BorderFactory.createEtchedBorder());
modifySOMDialog.add(settings, asdf);
asdf.fill = GridBagConstraints.HORIZONTAL;
asdf.gridwidth = 5;
asdf.gridheight = 1;
asdf.gridx = 0;
asdf.gridy = 16;
modifySOMDialog.add(new JSeparator(), asdf);
asdf.gridwidth = 2;
asdf.gridx = 7;
asdf.gridy = 0;
modifySOMDialog.add(new JSeparator(), asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridx = 7;
asdf.gridy = 1;
mIterationL = new JLabel("Set Number of Iterations:");
modifySOMDialog.add(mIterationL, asdf);
asdf.gridx = 7;
asdf.gridy = 2;
asdf.fill = GridBagConstraints.HORIZONTAL;
mIterationTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
mIterationTF.setText("");
modifySOMDialog.add(mIterationTF, asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridx = 7;
asdf.gridy = 3;
mLRL = new JLabel("Set Learning Rate (0-1):");
modifySOMDialog.add(mLRL, asdf);
asdf.gridx = 7;
asdf.gridy = 4;
asdf.fill = GridBagConstraints.HORIZONTAL;
mLRTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
mLRTF.setText("");
modifySOMDialog.add(mLRTF, asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridx = 7;
asdf.gridy = 5;
mMaxL = new JLabel("Set Data Maximum:");
modifySOMDialog.add(mMaxL, asdf);
asdf.gridx = 7;
asdf.gridy = 6;
asdf.fill = GridBagConstraints.HORIZONTAL;
mMaxTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
mMaxTF.setText("");
modifySOMDialog.add(mMaxTF, asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridx = 7;
asdf.gridy = 7;
mMinL = new JLabel("Set Data Minimum:");
modifySOMDialog.add(mMinL, asdf);
asdf.gridx = 7;
asdf.gridy = 8;
asdf.fill = GridBagConstraints.HORIZONTAL;
mMinTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
mMinTF.setText("");
modifySOMDialog.add(mMinTF, asdf);
asdf.fill = GridBagConstraints.HORIZONTAL;
asdf.gridy = 16;
modifySOMDialog.add(new JSeparator(), asdf);
asdf.fill = GridBagConstraints.NONE;
asdf.gridwidth = 1;
asdf.gridx = 3;
asdf.gridy = 17;
asdf.anchor = GridBagConstraints.PAGE_END;
modifySOM = new JButton("OK");
modifySOMDialog.add(modifySOM, asdf);
asdf.gridx = 7;
cancelModifySOM = new JButton("Cancel");
modifySOMDialog.add(cancelModifySOM, asdf);
settings.setText("");
settings.append("\n\nNumber of Iterations: "
+ net.get(resultsPane.getSelectedIndex()).getNumIterations());
settings.append(
"\n\nLearning Rate: " + net.get(resultsPane.getSelectedIndex()).getLearningRate());
settings.append("\n\nData Maximum: " + net.get(resultsPane.getSelectedIndex()).getDataMax());
settings.append("\n\nData Minimum: " + net.get(resultsPane.getSelectedIndex()).getDataMin());
mIterationTF.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (mIterationTF.getText() != "") {
net.get(resultsPane.getSelectedIndex())
.setNumIterations(Integer.parseInt(mIterationTF.getText()));
settings.setText("");
settings.append("\n\nNumber of Iterations: "
+ net.get(resultsPane.getSelectedIndex()).getNumIterations());
settings.append("\n\nLearning Rate: "
+ net.get(resultsPane.getSelectedIndex()).getLearningRate());
settings.append("\n\nData Maximum: "
+ net.get(resultsPane.getSelectedIndex()).getDataMax());
settings.append("\n\nData Minimum: "
+ net.get(resultsPane.getSelectedIndex()).getDataMin());
}
}
});
mLRTF.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if ((mLRTF.getText() != "") && ((Double.parseDouble(mLRTF.getText())) <= 1.0)) {
net.get(resultsPane.getSelectedIndex())
.setLearningRate(Double.parseDouble(mLRTF.getText()));
settings.setText("");
settings.append("\n\nNumber of Iterations: "
+ net.get(resultsPane.getSelectedIndex()).getNumIterations());
settings.append("\n\nLearning Rate: "
+ net.get(resultsPane.getSelectedIndex()).getLearningRate());
settings.append("\n\nData Maximum: "
+ net.get(resultsPane.getSelectedIndex()).getDataMax());
settings.append("\n\nData Minimum: "
+ net.get(resultsPane.getSelectedIndex()).getDataMin());
} else {
JOptionPane.showMessageDialog(mLRTF, "Pick a number from 0 - 1", "Incorrect Value",
JOptionPane.ERROR_MESSAGE);
mLRTF.setText("");
}
}
});
mMaxTF.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if ((mMaxTF.getText() != "") && (((Double.parseDouble(mMaxTF.getText())) > net
.get(resultsPane.getSelectedIndex()).getDataMin()))) {
net.get(resultsPane.getSelectedIndex())
.setDataMax(Double.parseDouble(mMaxTF.getText()));
settings.setText("");
settings.append("\n\nNumber of Iterations: "
+ net.get(resultsPane.getSelectedIndex()).getNumIterations());
settings.append("\n\nLearning Rate: "
+ net.get(resultsPane.getSelectedIndex()).getLearningRate());
settings.append("\n\nData Maximum: "
+ net.get(resultsPane.getSelectedIndex()).getDataMax());
settings.append("\n\nData Minimum: "
+ net.get(resultsPane.getSelectedIndex()).getDataMin());
} else {
JOptionPane.showMessageDialog(mMaxTF, "Max value must be greater than Min value",
"Incorrect Value", JOptionPane.ERROR_MESSAGE);
mMaxTF.setText("");
}
}
});
mMinTF.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if ((mMinTF.getText() != "") && ((Double.parseDouble(mMinTF.getText())) < net
.get(resultsPane.getSelectedIndex()).getDataMax())) {
net.get(resultsPane.getSelectedIndex())
.setDataMin(Double.parseDouble(mMinTF.getText()));
settings.setText("");
settings.append("\n\nNumber of Iterations: "
+ net.get(resultsPane.getSelectedIndex()).getNumIterations());
settings.append("\n\nLearning Rate: "
+ net.get(resultsPane.getSelectedIndex()).getLearningRate());
settings.append("\n\nData Maximum: "
+ net.get(resultsPane.getSelectedIndex()).getDataMax());
settings.append("\n\nData Minimum: "
+ net.get(resultsPane.getSelectedIndex()).getDataMin());
} else {
JOptionPane.showMessageDialog(mMinTF, "Min value must be less than Max value",
"Incorrect Value", JOptionPane.ERROR_MESSAGE);
mMinTF.setText("");
}
}
});
modifySOM.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
boolean error = false;
if (!("".equals(mIterationTF.getText()))) {
net.get(resultsPane.getSelectedIndex())
.setNumIterations(Integer.parseInt(mIterationTF.getText()));
}
if (!("".equals(mLRTF.getText()))) {
if ((Double.parseDouble(mLRTF.getText())) > 1.0) {
error = true;
mLRTF.setText("");
} else
net.get(resultsPane.getSelectedIndex())
.setLearningRate(Double.parseDouble(mLRTF.getText()));
}
if (!("".equals(mMaxTF.getText()))) {
if (((Double.parseDouble(mMaxTF.getText())) < net
.get(resultsPane.getSelectedIndex()).getDataMin())) {
error = true;
mMaxTF.setText("");
} else
net.get(resultsPane.getSelectedIndex())
.setDataMax(Double.parseDouble(mMaxTF.getText()));
}
if (!("".equals(mMinTF.getText()))) {
if ((Double.parseDouble(mMinTF.getText())) > net.get(resultsPane.getSelectedIndex())
.getDataMax()) {
error = true;
mMinTF.setText("");
} else
net.get(resultsPane.getSelectedIndex())
.setDataMin(Double.parseDouble(mMinTF.getText()));
}
if (error == true) {
JOptionPane.showMessageDialog(modifySOMDialog,
"One or more fields have incorrect values", "Incorrect Value",
JOptionPane.ERROR_MESSAGE);
} else {
modifySOMDialog.setVisible(false);
readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Map:\n");
printInitMap();
}
}
});
cancelModifySOM.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
modifySOMDialog.setVisible(false);
}
});
modifySOMDialog.setVisible(true);
}
}
});
modify.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : changeConfig.getActionListeners()) {
a.actionPerformed(ae);
}
}
});
//The following code is for the newNet button under file:
//create a dialog to be activated when "New Network" is pressed in the file menu
newDialog = new JDialog(mainWindow, "New Network", true);
newDialog.setSize(375, 100);
newDialog.setLayout(new GridLayout(3, 2)); //going to change the layout to GridBagLayout for better customization
name = new JLabel("Network Name:");
newName = new JTextField(10);
type = new JLabel("Type of Network:");
netTypes = new String[] { "Feed Forward Network", "Self-Organizing Map" };
netType = new JComboBox<String>(netTypes);
netType.setSelectedItem("Feed Forward Network");
createNewNet = new JButton("create");
cancelNew = new JButton("cancel");
newDialog.add(name);
newDialog.add(newName);
newDialog.add(type);
newDialog.add(netType);
newDialog.add(createNewNet);
newDialog.add(cancelNew);
//utilities for a second dialog(Feed Forward Network) in the process of creating a new network
number = new JLabel("Enter the number of layers you want for your network:");
howManyLayers = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
createFFNArchitecture = new JButton("OK");
cancelFFN = new JButton("Cancel");
howManyNodes = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
createFFN = new JButton("OK");
cancelNodes = new JButton("Cancel");
//Written by Michael Scott
somLattice = new JLabel(" Lattice number for your Map:");
somLatticeField = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
somLatticeField.setFocusLostBehavior(1);
somMax = new JLabel(" Maximum value of your input (if known):");
somMaxField = new JFormattedTextField(new NumberFormatter(NumberFormat.getInstance()));
somMaxField.setFocusLostBehavior(1);
somMin = new JLabel(" Minimum value of your input (if known):");
somMinField = new JFormattedTextField(new NumberFormatter(NumberFormat.getInstance()));
somMinField.setFocusLostBehavior(1);
somDim = new JLabel(" Node Dimensions:");
somDimField = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
somDimField.setFocusLostBehavior(1);
createSOM = new JButton("OK");
cancelSOM = new JButton("Cancel");
//displays the newDialog window when newNet is pressed
newNet.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
newDialog.setVisible(true);
}
});
newwer.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
newDialog.setVisible(true);
}
});
//makes hitting enter in the text box do the same thing as clicking "create"
newName.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : createNewNet.getActionListeners()) {
a.actionPerformed(ae);
}
}
});
//when create net is pressed, this reads the selections from the newNet dialog and creates the approriate next dialog
createNewNet.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
int test;
test = 0;
for (StringBuffer names : netName) {
if (names.toString().equals(newName.getText()))
test = 1;
}
if (test == 0)
if (!newName.getText().equals("")) {
if (netType.getSelectedIndex() == 0) { //if the net selected is Feed Forward, create and display the prompt for a feed forward network
newDialog.setVisible(false);
fFNDialog = new JDialog(mainWindow, newName.getText(), true);
fFNDialog.setSize(919, 65);
fFNDialog.setLayout(new GridLayout(2, 2));
fFNDialog.add(number);
fFNDialog.add(howManyLayers);
fFNDialog.add(createFFNArchitecture);
fFNDialog.add(cancelFFN);
fFNDialog.setVisible(true);
}
//Written by Michael Scott
if (netType.getSelectedIndex() == 1) {
newDialog.setVisible(false);
sOMDialog = new JDialog(mainWindow, newName.getText(), true);
sOMDialog.setSize(500, 180);
sOMDialog.setLayout(new GridLayout(5, 2));
sOMDialog.add(somLattice);
sOMDialog.add(somLatticeField);
sOMDialog.add(somDim);
sOMDialog.add(somDimField);
sOMDialog.add(somMax);
sOMDialog.add(somMaxField);
sOMDialog.add(somMin);
sOMDialog.add(somMinField);
sOMDialog.add(createSOM);
sOMDialog.add(cancelSOM);
sOMDialog.setVisible(true);
}
} else
JOptionPane.showMessageDialog(createNewNet, "Network must have a Name",
"Namelessness Error", JOptionPane.ERROR_MESSAGE);
else {
JOptionPane.showMessageDialog(createNewNet, "Network " + newName.getText() + " already exists",
"Existential Naming Error", JOptionPane.ERROR_MESSAGE);
newName.setText("");
}
}
});
//beginning of section about creating Feed Forward Networks
//cancel clears the name field and hides the newDialog dialog
cancelNew.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
newDialog.setVisible(false);
newName.setText("");
}
});
//makes hitting enter the same as clicking "ok"
howManyLayers.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : createFFNArchitecture.getActionListeners()) {
a.actionPerformed(ae);
}
}
});
//create a prompt for the first layer to determine how many nodes will go into the first layer
createFFNArchitecture.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (!howManyLayers.getText().equals("")
&& (layers = Integer.parseInt(howManyLayers.getText())) > 1) {
nodeConfiguration = new int[layers]; //create an array to hold the node configuration that will be passed to the Net constructor
layer = 1; //create a variable to hold the current layer the prompt series is on
numberofNodes = new JLabel("How many nodes do you want in layer " + layer + "?");
fFNDialog.setVisible(false);
howManyNodesDialog = new JDialog(mainWindow, newName.getText(), true);
howManyNodesDialog.setSize(919, 65);
howManyNodesDialog.setLayout(new GridLayout(2, 2));
howManyNodesDialog.add(numberofNodes);
howManyNodesDialog.add(howManyNodes);
howManyNodesDialog.add(createFFN);
howManyNodesDialog.add(cancelNodes);
howManyNodesDialog.setVisible(true);
} else {
//if the string is not valid, pop up an error message
JOptionPane.showMessageDialog(fFNDialog,
"<html>Number Out of Bounds<br>Please Enter a Number Greater than 1</html>",
"Out of Bounds", JOptionPane.ERROR_MESSAGE);
}
}
});
//runs each time ok is pressed, until all the layers have a vaule for the number of nodes in the layer
createFFN.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (!howManyNodes.getText().equals("")
&& (nodeConfiguration[layer - 1] = Integer.parseInt(howManyNodes.getText())) > 0) {
if (layer == layers) {
try {
//adds a close button to the top corner of each tab
title.add(new JLabel(newName.getText() + " "));
close.add(new JButton("X"));
close.get(openNets).setActionCommand(newName.getText());
close.get(openNets).setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
tabPanel.add(new JPanel(new GridBagLayout()));
tabPanel.get(openNets).setOpaque(false);
GridBagConstraints grid = new GridBagConstraints();
grid.fill = GridBagConstraints.HORIZONTAL;
grid.gridx = 0;
grid.gridy = 0;
grid.weightx = 1;
tabPanel.get(openNets).add(title.get(openNets), grid);
grid.gridx = 1;
grid.gridy = 0;
grid.weightx = 0;
tabPanel.get(openNets).add(close.get(openNets), grid);
//adds a loading bar
loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
loadingBar.get(openNets).setVisible(false);
//creates and sets the network configuration
net.add(new FullyConnectedFeedForwardNet(nodeConfiguration));
netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
netName.add(new StringBuffer(newName.getText()));
oneNet.add(new JPanel());
oneNet.get(openNets).setLayout(new GridBagLayout());
GridBagConstraints constraints = new GridBagConstraints();
constraints.fill = GridBagConstraints.BOTH;
//creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
readOut.add(new JTextArea(""));
readOutLocale.add(new JScrollPane(readOut.get(openNets)));
readOut.get(openNets).setEditable(false);
constraints.gridx = 0;
constraints.gridy = 0;
constraints.weighty = 1.0;
constraints.weightx = 1.0;
constraints.gridwidth = 2;
constraints.ipady = 90;
oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
constraints.fill = GridBagConstraints.HORIZONTAL;
constraints.gridx = 0;
constraints.gridy = 1;
constraints.ipady = 0;
constraints.gridwidth = 2;
constraints.anchor = GridBagConstraints.PAGE_END;
//add everythign to the tabbed pane
oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));
path.add("");
//display the starting configuration of the network
readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
resultsPane.setSelectedIndex(openNets++);
printConnections();
//erases all the text in the setup fields and closes the window
howManyNodes.setValue(null);
howManyLayers.setText("");
newName.setText("");
howManyNodesDialog.setVisible(false);
//unfortunately difficult way that I made to add the close button functionality to close a tab
//it works, but there has to be a better way to do this
close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
public void actionPerformed(final ActionEvent ae) {
int result;
result = 0;
for (StringBuffer names : netName) {
if (ae.getActionCommand().equals(names.toString())) {
result = JOptionPane.showConfirmDialog(createFFN,
"<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
"Close Network", JOptionPane.OK_CANCEL_OPTION);
resultsPane.setSelectedIndex(netName.indexOf(names));
}
}
if (result == JOptionPane.OK_OPTION) {
net.remove(resultsPane.getSelectedIndex());
oneNet.remove(resultsPane.getSelectedIndex());
readOutLocale.remove(resultsPane.getSelectedIndex());
readOut.remove(resultsPane.getSelectedIndex());
loadingBar.remove(resultsPane.getSelectedIndex());
tabPanel.remove(resultsPane.getSelectedIndex());
title.remove(resultsPane.getSelectedIndex());
close.remove(resultsPane.getSelectedIndex());
netName.remove(resultsPane.getSelectedIndex());
resultsPane.remove(resultsPane.getSelectedIndex());
openNets--;
}
}
});
} catch (OutOfMemoryError e) {
JOptionPane.showMessageDialog(mainWindow,
"<html>Net too Large for Memory.<br>Try Closing some of the Nets.</html>",
"Memory Error", JOptionPane.ERROR_MESSAGE);
}
} else {
layer++;
howManyNodes.setText("");
numberofNodes.setText("How many nodes do you want in layer " + layer + "?");
}
} else {
JOptionPane.showMessageDialog(createFFN,
"<html>Number Out of Bounds<br>Please Enter a Number Greater than 0", "Out of Bounds",
JOptionPane.ERROR_MESSAGE);
}
}
});
//makes hitting enter in text box the same as clicking ok
howManyNodes.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
for (ActionListener a : createFFN.getActionListeners()) {
a.actionPerformed(ae);
}
}
});
//cancels the node prompt
cancelNodes.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
newName.setText("");
howManyLayers.setText("");
howManyNodes.setText("");
howManyNodesDialog.setVisible(false);
}
});
//cancel clears both name fields so far filled in the series of dialogs and hides the dialog
cancelFFN.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
newName.setText("");
howManyLayers.setText("");
fFNDialog.setVisible(false);
}
});
//end of section about creating FFNs
//end of section about newNet
//Method to create a SOM
createSOM.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
if (somLatticeField.getText().equals("") || somDimField.getText().equals("")) {
JOptionPane.showMessageDialog(createSOM, "<html>Empty Field<br>Please Fill All Fields",
"Empty Field", JOptionPane.ERROR_MESSAGE);
} else {
if (somMaxField.getText().equals(""))
somMaxField.setText("100");
if (somMinField.getText().equals(""))
somMinField.setText("0");
if (Double.parseDouble(somMaxField.getText().replace(",", "")) < Double
.parseDouble(somMinField.getText().replace(",", ""))) {
JOptionPane.showMessageDialog(createSOM, "MIN GREATER THAN MAX!!!!", "Stupidity Error",
JOptionPane.ERROR_MESSAGE);
}
try {
//adds a close button to the top corner of each tab
title.add(new JLabel(newName.getText() + " "));
close.add(new JButton("X"));
close.get(openNets).setActionCommand(newName.getText());
close.get(openNets).setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
tabPanel.add(new JPanel(new GridBagLayout()));
tabPanel.get(openNets).setOpaque(false);
GridBagConstraints grid = new GridBagConstraints();
grid.fill = GridBagConstraints.HORIZONTAL;
grid.gridx = 0;
grid.gridy = 0;
grid.weightx = 1;
tabPanel.get(openNets).add(title.get(openNets), grid);
grid.gridx = 1;
grid.gridy = 0;
grid.weightx = 0;
tabPanel.get(openNets).add(close.get(openNets), grid);
//adds a loading bar
loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
loadingBar.get(openNets).setVisible(false);
//creates and sets the network configuration
net.add(new SelfOrganizingMap());
netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
netName.add(new StringBuffer(newName.getText()));
oneNet.add(new JPanel());
oneNet.get(openNets).setLayout(new GridBagLayout());
GridBagConstraints constraints = new GridBagConstraints();
constraints.fill = GridBagConstraints.BOTH;
//creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
readOut.add(new JTextArea(""));
readOutLocale.add(new JScrollPane(readOut.get(openNets)));
readOut.get(openNets).setEditable(false);
constraints.gridx = 0;
constraints.gridy = 0;
constraints.weighty = 1.0;
constraints.weightx = 1.0;
constraints.gridwidth = 2;
constraints.ipady = 90;
oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
constraints.fill = GridBagConstraints.HORIZONTAL;
constraints.gridx = 0;
constraints.gridy = 1;
constraints.ipady = 0;
constraints.gridwidth = 2;
constraints.anchor = GridBagConstraints.PAGE_END;
//add everythign to the tabbed pane
oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));
path.add("");
//display the starting configuration of the network
readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
resultsPane.setSelectedIndex(openNets++);
try {
net.get(resultsPane.getSelectedIndex())
.setLatticeValue(Integer.parseInt(somLatticeField.getText().replace(",", "")));
net.get(resultsPane.getSelectedIndex())
.setDataMax(Double.parseDouble(somMaxField.getText().replace(",", "")));
net.get(resultsPane.getSelectedIndex())
.setDataMin(Double.parseDouble(somMinField.getText().replace(",", "")));
net.get(resultsPane.getSelectedIndex())
.setInputDimensions(Integer.parseInt(somDimField.getText().replace(",", "")));
net.get(resultsPane.getSelectedIndex()).runNet();
readOut.get(resultsPane.getSelectedIndex()).append("Initial Untrained Map:\n");
printInitMap();
if (!getColorMap.isVisible()) {
util.addSeparator();
util.add(getColorMap);
getColorMap.setVisible(true);
}
//erases all the text in the setup fields and closes the window
newName.setText("");
somLatticeField.setText("");
somDimField.setText("");
somMaxField.setText("");
somMinField.setText("");
sOMDialog.setVisible(false);
//unfortunately difficult way that I made to add the close button functionality to close a tab
//it works, but there has to be a better way to do this
close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
public void actionPerformed(final ActionEvent ae) {
int result;
result = 0;
for (StringBuffer names : netName) {
if (ae.getActionCommand().equals(names.toString())) {
result = JOptionPane.showConfirmDialog(createSOM,
"<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
"Close Network", JOptionPane.OK_CANCEL_OPTION);
resultsPane.setSelectedIndex(netName.indexOf(names));
}
}
if (result == JOptionPane.OK_OPTION) {
net.remove(resultsPane.getSelectedIndex());
oneNet.remove(resultsPane.getSelectedIndex());
readOutLocale.remove(resultsPane.getSelectedIndex());
readOut.remove(resultsPane.getSelectedIndex());
loadingBar.remove(resultsPane.getSelectedIndex());
tabPanel.remove(resultsPane.getSelectedIndex());
title.remove(resultsPane.getSelectedIndex());
close.remove(resultsPane.getSelectedIndex());
netName.remove(resultsPane.getSelectedIndex());
resultsPane.remove(resultsPane.getSelectedIndex());
openNets--;
}
}
});
} catch (Exception e) {
net.remove(resultsPane.getSelectedIndex());
oneNet.remove(resultsPane.getSelectedIndex());
readOutLocale.remove(resultsPane.getSelectedIndex());
readOut.remove(resultsPane.getSelectedIndex());
loadingBar.remove(resultsPane.getSelectedIndex());
tabPanel.remove(resultsPane.getSelectedIndex());
title.remove(resultsPane.getSelectedIndex());
close.remove(resultsPane.getSelectedIndex());
netName.remove(resultsPane.getSelectedIndex());
resultsPane.remove(resultsPane.getSelectedIndex());
openNets--;
JOptionPane.showMessageDialog(sOMDialog, "Numbers too large to parse", "Parse error",
JOptionPane.ERROR_MESSAGE);
}
} catch (OutOfMemoryError e) {
JOptionPane.showMessageDialog(mainWindow,
"<html>Net too Large for Memory.<br>Try Closing some of the Nets.</html>",
"Memory Error", JOptionPane.ERROR_MESSAGE);
}
}
}
});
cancelSOM.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent ae) {
newName.setText("");
somLatticeField.setText("");
somMaxField.setText("");
somMinField.setText("");
sOMDialog.setVisible(false);
}
});
//end of SOM creation
mainWindow.setVisible(true);
}
From source file:gov.nih.nci.evs.browser.utils.SearchUtils.java
public ResolvedConceptReferencesIteratorWrapper searchByName(Vector<String> schemes, Vector<String> versions, String matchText, String source, String matchAlgorithm, boolean ranking, int maxToReturn) { try {//from ww w. j a va2 s. co m if (matchText == null || matchText.trim().length() == 0) return null; Utils.StopWatch stopWatch = new Utils.StopWatch(); Utils.StopWatch stopWatchTotal = new Utils.StopWatch(); boolean debug_flag = false; matchText = matchText.trim(); _logger.debug("searchByName ... " + matchText); // p11.1-q11.1 // /100{WBC} if (matchAlgorithm.compareToIgnoreCase("contains") == 0) { // matchAlgorithm = Constants.CONTAIN_SEARCH_ALGORITHM; matchAlgorithm = findBestContainsAlgorithm(matchText); } LexBIGService lbSvc = RemoteServerUtil.createLexBIGService(); Vector<CodedNodeSet> cns_vec = new Vector<CodedNodeSet>(); for (int i = 0; i < schemes.size(); i++) { stopWatch.start(); String scheme = (String) schemes.elementAt(i); CodingSchemeVersionOrTag versionOrTag = new CodingSchemeVersionOrTag(); String version = (String) versions.elementAt(i); if (version != null) versionOrTag.setVersion(version); CodedNodeSet cns = getNodeSet(lbSvc, scheme, versionOrTag); if (cns != null) { cns = cns.restrictToMatchingDesignations(matchText, null, matchAlgorithm, null); cns = restrictToSource(cns, source); } if (cns != null) cns_vec.add(cns); if (debug_flag) _logger.debug("Restricting CNS on " + scheme + " delay (msec): " + stopWatch.duration()); } SortOptionList sortCriteria = null; LocalNameList restrictToProperties = new LocalNameList(); boolean resolveConcepts = false; if (ranking) { sortCriteria = null;// Constructors.createSortOptionList(new // String[]{"matchToQuery"}); } else { sortCriteria = Constructors.createSortOptionList(new String[] { "entityDescription" }); // code _logger.debug("*** Sort alphabetically..."); } stopWatch.start(); if (debug_flag) _logger.debug("Calling cns.resolve to resolve the union CNS ... "); ResolvedConceptReferencesIterator iterator = new QuickUnionIterator(cns_vec, sortCriteria, null, restrictToProperties, null, resolveConcepts); if (debug_flag) _logger.debug("Resolve CNS union delay (msec): " + stopWatch.duration()); if (iterator.numberRemaining() <= 0) { stopWatch.start(); iterator = matchConceptCode(schemes, versions, matchText, source, CODE_SEARCH_ALGORITHM); if (debug_flag) _logger.debug("Match concept code delay (msec): " + stopWatch.duration()); } _logger.debug("Total search delay (msec): " + stopWatchTotal.duration()); return new ResolvedConceptReferencesIteratorWrapper(iterator); } catch (Exception e) { e.printStackTrace(); return null; } }