List of usage examples for java.util ArrayList set
public E set(int index, E element)
From source file:com.hygenics.parser.ForceConformityWithReference.java
private void iter() { log.info("Starting Enforcement @ " + Calendar.getInstance().getTime().toString() + " | UTC " + Calendar.getInstance().getTimeInMillis()); String sql;//w w w. ja v a 2s. co m boolean add = true; ArrayList<String> columns = null; ArrayList<String> tablecolumns = null; Quicksort<String> qs = new Quicksort<String>(); Levenshtein lev = new Levenshtein(); // iterate through each table for (String table : schema_columns.keySet()) { log.info("Checking for Table Existance " + table); String schema = this.baseschema; log.info("Checking table: " + table + "&& schema: " + schema); if (template.checkTable(this.baseschema + "." + table, schema)) { log.info("Conforming: " + table); // get the arraylist tablecolumns = template.getColumns(this.baseschema + "." + table); if (insensitive == true) { for (int i = 0; i < tablecolumns.size(); i++) { tablecolumns.set(i, tablecolumns.get(i).toLowerCase()); } } columns = (ArrayList<String>) schema_columns.get(table); if (insensitive == true) { for (int i = 0; i < columns.size(); i++) { columns.set(i, columns.get(i).toLowerCase()); } } if (exclude != null) { // remove unmatchable columns if (exclude.size() > 0) { for (String col : exclude) { tablecolumns.remove(col); columns.remove(col); } } } // sort each arraylist qs.setTosortlist(columns); columns = qs.sort(); qs.setTosortlist(tablecolumns); tablecolumns = qs.sort(); // check each remaining column for (int i = 0; i < columns.size(); i++) { if (tablecolumns.contains(columns.get(i).trim()) == false || (insensitive == true && tablecolumns.contains(columns.get(i).toLowerCase().trim()) == false)) { if (correct) { int dist = Levenshtein.getLevenshteinDistance(tablecolumns.get(i), columns.get(i)); add = false; log.info("Distance was " + dist + " Cutoff is " + levcutoff); // check lev. distances if requested and ensure some // match with fuzzy (use at your own risk) if (levcutoff > -1 & dist <= levcutoff) { log.info("Approximate Match: Correcting Column"); // if distance is within 1 or specified // distances, correct it sql = "ALTER TABLE " + this.baseschema + "." + table + " RENAME COLUMN " + tablecolumns.get(i) + " TO " + columns.get(i); template.execute(sql); // get the table columns tablecolumns = template.getColumns(this.baseschema + "." + table); qs.setTosortlist(tablecolumns); tablecolumns = qs.sort(); } } else { add = true; } if (add) { // add column if necessary sql = "Alter Table " + this.baseschema + "." + table + " ADD COLUMN " + columns.get(i) + " text"; template.execute(sql); // get the table columns again and resort them tablecolumns = template.getColumns(this.baseschema + "." + table); if (exclude != null) { if (exclude.size() > 0) { for (String ex : exclude) { tablecolumns.remove(ex); columns.remove(ex); } } } qs.setTosortlist(tablecolumns); tablecolumns = qs.sort(); } // iterate backward so that the integrety is assured i--; } } } else { try { throw new SQLMalformedException("WARNING: Table " + table + " is missing"); } catch (SQLMalformedException e) { e.printStackTrace(); } } } log.info("Finishing Enforcement @ " + Calendar.getInstance().getTime().toString() + " | UTC " + Calendar.getInstance().getTimeInMillis()); }
From source file:org.openmrs.module.accessmonitor.web.controller.AccessMonitorOrderController.java
@RequestMapping(value = "/module/accessmonitor/order", method = RequestMethod.POST) public void postSave(ModelMap model, HttpServletRequest request) throws IOException { if (request.getParameter("offset") != null) { offset = Integer.parseInt(request.getParameter("offset")); }/*from w w w. j a v a 2 s . c o m*/ int count = -1; // parse them to Date, null is acceptable DateFormat format = new SimpleDateFormat("MM/dd/yyyy"); // Get the from date and to date Date to = null; Date from = null; try { from = format.parse(request.getParameter("datepickerFrom")); } catch (Exception e) { //System.out.println("======From Date Empty======="); } try { to = format.parse(request.getParameter("datepickerTo")); } catch (Exception e) { //System.out.println("======To Date Empty======="); } if (orderAccessData == null || orderAccessData.size() == 0) { // get all the records in the date range orderAccessData = ((OrderAccessService) Context.getService(OrderAccessService.class)) .getOrderAccessesByAccessDateOrderByPatientId(from, to); if (orderAccessData == null) { orderAccessData = new ArrayList<OrderServiceAccess>(); } } // get date for small graph Date toSmall = to; Date fromSmall = null; Calendar calendar = Calendar.getInstance(); calendar.add(Calendar.DATE, 1); if (toSmall == null) { toSmall = calendar.getTime(); } else { calendar.setTime(toSmall); } calendar.add(Calendar.DATE, -DAYNUM); fromSmall = calendar.getTime(); List<String> dateStrings = new ArrayList<String>(); for (int i = 0; i < DAYNUM; i++) { if (i == DAYNUM - 1) { dateStrings.add(format.format(toSmall)); } else if (i == 0) { dateStrings.add(format.format(fromSmall)); } else { dateStrings.add(""); } } ArrayList<ArrayList<Integer>> tooltip = new ArrayList<ArrayList<Integer>>(); tooltip.add(new ArrayList<Integer>()); for (int j = 0; j < SHOWNUM + 1; j++) { tooltip.get(0).add(1000 + j); } for (int i = 1; i < DAYNUM + 1; i++) { tooltip.add(new ArrayList<Integer>()); tooltip.get(i).add(i); for (int j = 0; j < SHOWNUM; j++) { tooltip.get(i).add(0); } } ArrayList<String> patientIds = new ArrayList<String>(); ArrayList<Integer> patientCounts = new ArrayList<Integer>(); String last = ""; for (OrderServiceAccess oa : orderAccessData) { // data for big graph String idString = (oa.getPatientId() == null) ? "No ID" : oa.getPatientId().toString(); if (!idString.equals(last)) { count++; last = idString; } int index = patientIds.indexOf(idString); if (index < 0) { if (count < offset) continue; if (patientIds.size() >= SHOWNUM) break; patientIds.add(idString); patientCounts.add(1); index = patientIds.size() - 1;//index = personIds.indexOf(idString); } else { patientCounts.set(index, patientCounts.get(index) + 1); } // data for small graph if (oa.getAccessDate().after(fromSmall) && oa.getAccessDate().before(toSmall)) { int index2 = (int) ((oa.getAccessDate().getTime() - fromSmall.getTime()) / (1000 * 60 * 60 * 24)); if (index2 < DAYNUM && index2 >= 0) tooltip.get(index2 + 1).set(index + 1, tooltip.get(index2 + 1).get(index + 1) + 1); } } String patientIdString = JSONValue.toJSONString(patientIds); String patientCountString = JSONValue.toJSONString(patientCounts); String dateSmallString = JSONValue.toJSONString(dateStrings); String tooltipdata = JSONValue.toJSONString(tooltip); model.addAttribute("patientIds", patientIdString); model.addAttribute("patientCounts", patientCountString); model.addAttribute("dateSmallString", dateSmallString); model.addAttribute("tooltipdata", tooltipdata); model.addAttribute("user", Context.getAuthenticatedUser()); //model.addAttribute("tables1", orderAccessData); //model.addAttribute("dateSmall", dateStrings); model.addAttribute("currentoffset", String.valueOf(offset)); }
From source file:org.openmrs.module.accessmonitor.web.controller.AccessMonitorVisitController.java
@RequestMapping(value = "/module/accessmonitor/visit", method = RequestMethod.POST) public void postSave(ModelMap model, HttpServletRequest request) throws IOException { if (request.getParameter("offset") != null) { offset = Integer.parseInt(request.getParameter("offset")); }/*ww w. j a v a 2 s . co m*/ int count = -1; // parse them to Date, null is acceptabl DateFormat format = new SimpleDateFormat("MM/dd/yyyy"); // Get the from date and to date Date to = null; Date from = null; try { from = format.parse(request.getParameter("datepickerFrom")); } catch (Exception e) { //System.out.println("======From Date Empty======="); } try { to = format.parse(request.getParameter("datepickerTo")); } catch (Exception e) { //System.out.println("======To Date Empty======="); } if (visitAccessData == null || visitAccessData.size() == 0) { // get all the records in the date range visitAccessData = ((VisitAccessService) Context.getService(VisitAccessService.class)) .getVisitAccessesByAccessDateOrderByPatientId(from, to); if (visitAccessData == null) { visitAccessData = new ArrayList<VisitServiceAccess>(); } } // get date for small graph Date toSmall = to; Date fromSmall = null; Calendar calendar = Calendar.getInstance(); calendar.add(Calendar.DATE, 1); if (toSmall == null) { toSmall = calendar.getTime(); } else { calendar.setTime(toSmall); } calendar.add(Calendar.DATE, -DAYNUM); fromSmall = calendar.getTime(); List<String> dateStrings = new ArrayList<String>(); for (int i = 0; i < DAYNUM; i++) { if (i == DAYNUM - 1) { dateStrings.add(format.format(toSmall)); } else if (i == 0) { dateStrings.add(format.format(fromSmall)); } else { dateStrings.add(""); } } ArrayList<ArrayList<Integer>> tooltip = new ArrayList<ArrayList<Integer>>(); tooltip.add(new ArrayList<Integer>()); for (int j = 0; j < SHOWNUM + 1; j++) { tooltip.get(0).add(1000 + j); } for (int i = 1; i < DAYNUM + 1; i++) { tooltip.add(new ArrayList<Integer>()); tooltip.get(i).add(i); for (int j = 0; j < SHOWNUM; j++) { tooltip.get(i).add(0); } } ArrayList<String> patientIds = new ArrayList<String>(); ArrayList<Integer> patientCounts = new ArrayList<Integer>(); String last = ""; for (VisitServiceAccess va : visitAccessData) { // data for big graph String idString = (va.getPatientId() == null) ? "No ID" : va.getPatientId().toString(); if (!idString.equals(last)) { count++; last = idString; } int index = patientIds.indexOf(idString); if (index < 0) { if (count < offset) continue; if (patientIds.size() >= SHOWNUM) break; patientIds.add(idString); patientCounts.add(1); index = patientIds.size() - 1;//index = patientIds.indexOf(idString); } else { patientCounts.set(index, patientCounts.get(index) + 1); } // data for small graph if (va.getAccessDate().after(fromSmall) && va.getAccessDate().before(toSmall)) { int index2 = (int) ((va.getAccessDate().getTime() - fromSmall.getTime()) / (1000 * 60 * 60 * 24)); if (index2 < DAYNUM && index2 >= 0) tooltip.get(index2 + 1).set(index + 1, tooltip.get(index2 + 1).get(index + 1) + 1); } } String patientIdString = JSONValue.toJSONString(patientIds); String patientCountString = JSONValue.toJSONString(patientCounts); String dateSmallString = JSONValue.toJSONString(dateStrings); String tooltipdata = JSONValue.toJSONString(tooltip); model.addAttribute("patientIds", patientIdString); model.addAttribute("patientCounts", patientCountString); model.addAttribute("dateSmallString", dateSmallString); model.addAttribute("tooltipdata", tooltipdata); model.addAttribute("user", Context.getAuthenticatedUser()); // model.addAttribute("tables1", visitAccessData); // model.addAttribute("dateSmall", dateStrings); model.addAttribute("currentoffset", String.valueOf(offset)); }
From source file:at.illecker.hama.hybrid.examples.hellohybrid.HelloHybridBSP.java
@Override public void bsp(BSPPeer<IntWritable, NullWritable, IntWritable, NullWritable, NullWritable> peer) throws IOException, SyncException, InterruptedException { BSPJob job = new BSPJob((HamaConfiguration) peer.getConfiguration()); FileSystem fs = FileSystem.get(peer.getConfiguration()); FSDataOutputStream outStream = fs//from www. j av a 2 s . c om .create(new Path(FileOutputFormat.getOutputPath(job), peer.getTaskId() + ".log")); outStream.writeChars("HelloHybrid.bsp executed on CPU!\n"); ArrayList<Integer> summation = new ArrayList<Integer>(); // test input IntWritable key = new IntWritable(); NullWritable nullValue = NullWritable.get(); while (peer.readNext(key, nullValue)) { outStream.writeChars("input: key: '" + key.get() + "'\n"); summation.add(key.get()); } // test sequenceFileReader Path example = new Path(peer.getConfiguration().get(CONF_EXAMPLE_PATH)); SequenceFile.Reader reader = null; try { reader = new SequenceFile.Reader(fs, example, peer.getConfiguration()); int i = 0; while (reader.next(key, nullValue)) { outStream.writeChars("sequenceFileReader: key: '" + key.get() + "'\n"); if (i < summation.size()) { summation.set(i, summation.get(i) + key.get()); } i++; } } catch (IOException e) { throw new RuntimeException(e); } finally { if (reader != null) { reader.close(); } } // test output for (Integer i : summation) { key.set(i); outStream.writeChars("output: key: '" + key.get() + "'\n"); peer.write(key, nullValue); } // test getAllPeerNames outStream.writeChars("getAllPeerNames: '" + Arrays.toString(peer.getAllPeerNames()) + "'\n"); // test String.split String splitString = "boo:and:foo"; String[] splits; outStream.writeChars("splitString: '" + splitString + "'\n"); splits = splitString.split(":"); outStream.writeChars("split(\":\") len: " + splits.length + " values: '" + Arrays.toString(splits) + "'\n"); splits = splitString.split(":", 2); outStream.writeChars( "split(\":\",2) len: " + splits.length + " values: '" + Arrays.toString(splits) + "'\n"); splits = splitString.split(":", 5); outStream.writeChars( "split(\":\",5) len: " + splits.length + " values: '" + Arrays.toString(splits) + "'\n"); splits = splitString.split(":", -2); outStream.writeChars( "split(\":\",-2) len: " + splits.length + " values: '" + Arrays.toString(splits) + "'\n"); splits = splitString.split(";"); outStream.writeChars("split(\";\") len: " + splits.length + " values: '" + Arrays.toString(splits) + "'\n"); outStream.close(); }
From source file:classes.MyVisitor.java
@Override public T visitDef_arreglo(MyLanguageParser.Def_arregloContext ctx) { T visit = visitExpr(ctx.expr());//from w ww . j a va 2 s. c om ArrayList<String> lista = (ArrayList<String>) visit; ArrayList<Integer> cuantos = new ArrayList<>(); int size = 1; for (int i = 1; i < lista.size(); i++) { size *= Integer.valueOf(lista.get(i)); } for (int i = 1; i < lista.size(); i++) { cuantos.add(size / Integer.valueOf(lista.get(i))); } ArrayList<String> add = new ArrayList<>(); for (int i = 0; i < size; i++) { add.add(lista.get(0) + "["); } for (int i = 1; i < lista.size(); i++) { add = dimensiones(size, Integer.valueOf(lista.get(i)), add); } for (int i = 0; i < size; i++) { add.set(i, add.get(i).substring(0, add.get(i).length() - 1)); add.set(i, add.get(i).concat("]")); } for (String string : add) { guardar(string, lista.get(0)); } return visitChildren(ctx); }
From source file:com.pidoco.juri.JURI.java
/** * Decodes the path segments on request. * @return a new list that the caller may manipulate. Empty string if no path or the root path is set. Returns * empty path segments (//as//df// has three empty * segments)./* ww w . j av a 2s. co m*/ */ public List<String> getPathSegments() { ArrayList<String> result = getRawPathSegments(); for (int i = 0; i < result.size(); i++) { String segment = result.get(i); result.set(i, urlDecode(segment)); } return result; }
From source file:cn.edu.hfut.dmic.contentextractor.ContentExtractor.java
protected String getTitleByEditDistance(Element contentElement) throws Exception { final String metaTitle = doc.title(); final ArrayList<Double> max = new ArrayList<Double>(); max.add(0.0);/* w w w . j a va2s . co m*/ final StringBuilder sb = new StringBuilder(); doc.body().traverse(new NodeVisitor() { public void head(Node node, int i) { if (node instanceof TextNode) { TextNode tn = (TextNode) node; String text = tn.text().trim(); double sim = strSim(text, metaTitle); if (sim > 0) { if (sim > max.get(0)) { max.set(0, sim); sb.setLength(0); sb.append(text); } } } } public void tail(Node node, int i) { } }); if (sb.length() > 0) { return sb.toString(); } throw new Exception(); }
From source file:org.akaza.openclinica.control.managestudy.ViewStudySubjectServlet.java
public static void populateUncompletedCRFsWithCRFAndVersions(DataSource ds, ArrayList uncompletedEventDefinitionCRFs) { CRFDAO cdao = new CRFDAO(ds); CRFVersionDAO cvdao = new CRFVersionDAO(ds); int size = uncompletedEventDefinitionCRFs.size(); for (int i = 0; i < size; i++) { DisplayEventDefinitionCRFBean dedcrf = (DisplayEventDefinitionCRFBean) uncompletedEventDefinitionCRFs .get(i);/*from w ww. j a v a 2 s . c o m*/ CRFBean cb = (CRFBean) cdao.findByPK(dedcrf.getEdc().getCrfId()); dedcrf.getEdc().setCrf(cb); ArrayList theVersions = (ArrayList) cvdao.findAllActiveByCRF(dedcrf.getEdc().getCrfId()); ArrayList versions = new ArrayList(); HashMap<String, CRFVersionBean> crfVersionIds = new HashMap<String, CRFVersionBean>(); for (int j = 0; j < theVersions.size(); j++) { CRFVersionBean crfVersion = (CRFVersionBean) theVersions.get(j); crfVersionIds.put(String.valueOf(crfVersion.getId()), crfVersion); } if (!dedcrf.getEdc().getSelectedVersionIds().equals("")) { String[] kk = dedcrf.getEdc().getSelectedVersionIds().split(","); for (String string : kk) { if (crfVersionIds.get(string) != null) { versions.add(crfVersionIds.get(string)); } } } else { versions = theVersions; } dedcrf.getEdc().setVersions(versions); uncompletedEventDefinitionCRFs.set(i, dedcrf); } }
From source file:com.twosigma.beaker.core.rest.PluginServiceLocatorRest.java
/** * locatePluginService/*from ww w. ja v a2s . c o m*/ * locate the service that matches the passed-in information about a service and return the * base URL the client can use to connect to the target plugin service. If such service * doesn't exist, this implementation will also start the service. * * @param pluginId * @param command name of the starting script * @param nginxRules rules to help setup nginx proxying * @param startedIndicator string indicating that the plugin has started * @param startedIndicatorStream stream to search for indicator, null defaults to stdout * @param recordOutput boolean, record out/err streams to output log service or not, null defaults * to false * @param waitfor if record output log service is used, string to wait for before logging starts * @return the base url of the service * @throws InterruptedException * @throws IOException */ @GET @Path("/{plugin-id}") @Produces(MediaType.TEXT_PLAIN) public Response locatePluginService(@PathParam("plugin-id") String pluginId, @QueryParam("command") String command, @QueryParam("nginxRules") @DefaultValue("rest") String nginxRules, @QueryParam("startedIndicator") String startedIndicator, @QueryParam("startedIndicatorStream") @DefaultValue("stdout") String startedIndicatorStream, @QueryParam("recordOutput") @DefaultValue("false") boolean recordOutput, @QueryParam("waitfor") String waitfor) throws InterruptedException, IOException, ExecutionException { PluginConfig pConfig = this.plugins.get(pluginId); if (pConfig != null && pConfig.isStarted()) { logger.info("plugin service " + pluginId + " already started at" + pConfig.getBaseUrl()); return buildResponse(pConfig.getBaseUrl(), false); } String password = RandomStringUtils.random(40, true, true); Process proc = null; String restartId = ""; /* * Only one plugin can be started at a given time since we need to find a free port. * We serialize starting of plugins and we parallelize nginx configuration reload with the actual plugin * evaluator start. */ synchronized (this) { // find a port to use for proxypass between nginx and the plugin final int port = getNextAvailablePort(this.portSearchStart); final String baseUrl = generatePrefixedRandomString(pluginId, 12).replaceAll("[\\s]", ""); pConfig = new PluginConfig(port, nginxRules, baseUrl, password); this.portSearchStart = pConfig.port + 1; this.plugins.put(pluginId, pConfig); if (nginxRules.startsWith("ipython")) { generateIPythonConfig(pluginId, port, password, command); if (isIPython4OrNewer(getIPythonVersion(pluginId, command))) { new JupyterWidgetsExtensionProcessor(pluginId, this.pluginDir).copyJupyterExtensionIfExists(); } } // reload nginx config restartId = generateNginxConfig(); Process restartproc = Runtime.getRuntime().exec(this.nginxRestartCommand, this.nginxEnv); startGobblers(restartproc, "restart-nginx-" + pluginId, null, null); restartproc.waitFor(); ArrayList<String> fullCommand = new ArrayList<String>(Arrays.asList(command.split("\\s+"))); String args; fullCommand.set(0, (this.pluginLocations.containsKey(pluginId) ? this.pluginLocations.get(pluginId) : this.pluginDir) + "/" + fullCommand.get(0)); if (Files.notExists(Paths.get(fullCommand.get(0)))) { throw new PluginServiceNotFoundException("plugin service " + pluginId + " not found at " + command); } List<String> extraArgs = this.pluginArgs.get(pluginId); if (extraArgs != null) { fullCommand.addAll(extraArgs); } fullCommand.add(Integer.toString(pConfig.port)); String[] env = buildEnv(pluginId, password); if (windows()) { String python = this.config.getInstallDirectory() + "\\python\\python"; fullCommand.add(0, python); } logger.info("Running"); for (int i = 0; i < fullCommand.size(); i++) { logger.info(i + ": " + fullCommand.get(i)); } proc = Runtime.getRuntime().exec(listToArray(fullCommand), env); } if (startedIndicator != null && !startedIndicator.isEmpty()) { InputStream is = startedIndicatorStream.equals("stderr") ? proc.getErrorStream() : proc.getInputStream(); InputStreamReader ir = new InputStreamReader(is); BufferedReader br = new BufferedReader(ir); String line = ""; while ((line = br.readLine()) != null) { logger.info("looking on " + startedIndicatorStream + " found:" + line); if (line.indexOf(startedIndicator) >= 0) { logger.info("Acknowledge " + pluginId + " plugin started due to " + startedIndicator); break; } } if (null == line) { throw new PluginServiceNotFoundException("plugin service: " + pluginId + " failed to start"); } } startGobblers(proc, pluginId, recordOutput ? this.outputLogService : null, waitfor); // check that nginx did actually restart String url = "http://127.0.0.1:" + this.restartPort + "/restart." + restartId + "/present.html"; try { spinCheck(url); } catch (Throwable t) { logger.warn("time out plugin = {}", pluginId); this.plugins.remove(pluginId); if (windows()) { new WinProcess(proc).killRecursively(); } else { proc.destroy(); // send SIGTERM } throw new NginxRestartFailedException( "nginx restart failed.\n" + "url=" + url + "\n" + "message=" + t.getMessage()); } pConfig.setProcess(proc); logger.info("Done starting " + pluginId); return buildResponse(pConfig.getBaseUrl(), true); }
From source file:ispd.gui.auxiliar.Graficos.java
public void criarGraficoPreempcao(RedeDeFilas rdf, List<Tarefa> tarefas) { DefaultCategoryDataset preempPorUsuario = new DefaultCategoryDataset(); double mflopTotal = 0.0, tamanhoTotal; ArrayList<Integer> tarefasPreemp; tarefasPreemp = new ArrayList(); int i, j, indexUsuario; for (i = 0; i < rdf.getUsuarios().size(); i++) { tarefasPreemp.add(0);//from w w w .ja v a 2 s .c o m } for (i = 0; i < tarefas.size(); i++) { indexUsuario = rdf.getUsuarios().indexOf(tarefas.get(i).getProprietario()); if (tarefas.get(i).getMflopsDesperdicados() > 0.0 && tarefas.get(i).getEstado() != Tarefa.CANCELADO) { tarefasPreemp.set(indexUsuario, 1 + tarefasPreemp.get(indexUsuario)); } mflopTotal = 0.0; } for (i = 0; i < rdf.getUsuarios().size(); i++) { preempPorUsuario.addValue(tarefasPreemp.get(i), "Number of tasks", rdf.getUsuarios().get(i)); } JFreeChart jfc = ChartFactory.createStackedBarChart("Tasks preempted per user", //Titulo "", // Eixo X "Number of tasks", //Eixo Y preempPorUsuario, // Dados para o grafico PlotOrientation.VERTICAL, //Orientacao do grafico true, true, false); // exibir: legendas, tooltips, url PreemptionPerUser = new ChartPanel(jfc); PreemptionPerUser.setPreferredSize(new Dimension(600, 300)); }