List of usage examples for java.util ArrayList set
public E set(int index, E element)
From source file:net.opentsdb.tree.Leaf.java
/** * Attempts to parse the leaf from the given column, optionally loading the * UID names. This is used by the branch loader when scanning an entire row. * <b>Note:</b> The column better have a qualifier that starts with "leaf:" or * we're likely to throw a parsing exception. * @param tsdb The TSDB to use for storage access * @param column Column to parse a leaf from * @param load_uids Whether or not to load UID names from the TSD * @return The parsed leaf if successful * @throws IllegalArgumentException if the column was missing data * @throws NoSuchUniqueId If any of the UID name mappings do not exist * @throws HBaseException if there was an issue * @throws JSONException if the object could not be serialized *///from w w w . ja v a 2s . c o m public static Deferred<Leaf> parseFromStorage(final TSDB tsdb, final KeyValue column, final boolean load_uids) { if (column.value() == null) { throw new IllegalArgumentException("Leaf column value was null"); } // qualifier has the TSUID in the format "leaf:<display_name.hashCode()>" // and we should only be here if the qualifier matched on "leaf:" final Leaf leaf = JSON.parseToObject(column.value(), Leaf.class); // if there was an error with the data and the tsuid is missing, dump it if (leaf.tsuid == null || leaf.tsuid.isEmpty()) { LOG.warn("Invalid leaf object in row: " + Branch.idToString(column.key())); return Deferred.fromResult(null); } // if we don't need to load UIDs, then return now if (!load_uids) { return Deferred.fromResult(leaf); } // split the TSUID to get the tags final List<byte[]> parsed_tags = UniqueId.getTagsFromTSUID(leaf.tsuid); // initialize the with empty objects, otherwise the "set" operations in // the callback won't work. final ArrayList<String> tags = new ArrayList<String>(parsed_tags.size()); for (int i = 0; i < parsed_tags.size(); i++) { tags.add(""); } // setup an array of deferreds to wait on so we can return the leaf only // after all of the name fetches have completed final ArrayList<Deferred<Object>> uid_group = new ArrayList<Deferred<Object>>(parsed_tags.size() + 1); /** * Callback executed after the UID name has been retrieved successfully. * The {@code index} determines where the result is stored: -1 means metric, * >= 0 means tag */ final class UIDNameCB implements Callback<Object, String> { final int index; public UIDNameCB(final int index) { this.index = index; } @Override public Object call(final String name) throws Exception { if (index < 0) { leaf.metric = name; } else { tags.set(index, name); } return null; } } // fetch the metric name first final byte[] metric_uid = UniqueId.stringToUid(leaf.tsuid.substring(0, TSDB.metrics_width() * 2)); uid_group.add(tsdb.getUidName(UniqueIdType.METRIC, metric_uid).addCallback(new UIDNameCB(-1))); int idx = 0; for (byte[] tag : parsed_tags) { if (idx % 2 == 0) { uid_group.add(tsdb.getUidName(UniqueIdType.TAGK, tag).addCallback(new UIDNameCB(idx))); } else { uid_group.add(tsdb.getUidName(UniqueIdType.TAGV, tag).addCallback(new UIDNameCB(idx))); } idx++; } /** * Called after all of the UID name fetches have completed and parses the * tag name/value list into name/value pairs for proper display */ final class CollateUIDsCB implements Callback<Deferred<Leaf>, ArrayList<Object>> { /** * @return A valid Leaf object loaded with UID names */ @Override public Deferred<Leaf> call(final ArrayList<Object> name_calls) throws Exception { int idx = 0; String tagk = ""; leaf.tags = new HashMap<String, String>(tags.size() / 2); for (String name : tags) { if (idx % 2 == 0) { tagk = name; } else { leaf.tags.put(tagk, name); } idx++; } return Deferred.fromResult(leaf); } } // wait for all of the UID name fetches in the group to complete before // returning the leaf return Deferred.group(uid_group).addCallbackDeferring(new CollateUIDsCB()); }
From source file:com.liferay.ide.portlet.core.PluginPackageModel.java
public void swapDependencies(String property, String dep1, String dep2) { String[] deps = null;//from w w w .j a v a2 s .co m String depsValue = pluginPackageProperties.getString(property, null); if (depsValue != null) { deps = depsValue.split(","); //$NON-NLS-1$ } else { deps = new String[0]; } ArrayList<String> list = new ArrayList<String>(); Collections.addAll(list, deps); int index1 = list.indexOf(dep1); int index2 = list.indexOf(dep2); list.set(index2, dep1); list.set(index1, dep2); String[] newValues = list.toArray(new String[0]); StringBuffer buffer = new StringBuffer(); for (String val : newValues) { buffer.append(val + ","); //$NON-NLS-1$ } String newValue = buffer.toString().substring(0, buffer.length() - 1); pluginPackageProperties.setProperty(property, newValue); flushProperties(); fireModelChanged(new ModelChangedEvent(this, null, property, depsValue, newValue)); }
From source file:com.ge.research.semtk.load.DataCleaner.java
/** * Take a row of data and remove null strings * @param row the input row of data//from ww w . j a va 2s .c o m * @return cleaned rows of data */ private ArrayList<String> performRemoveNulls(ArrayList<String> row) { String value; for (int i = 0; i < row.size(); i++) { // for each value in the row value = row.get(i); if (value.trim().equalsIgnoreCase("null")) { // if's null string row.set(i, ""); // change to empty string } } return row; }
From source file:hrpod.tools.nlp.NLPTools.java
public ArrayList<String> stemmer(ArrayList<String> wordList) { PorterStemmer stemmer = new PorterStemmer(); for (int wl = 0; wl < wordList.size(); wl++) { //logger.info("OLD WORD: " + wordList.get(wl)); ArrayList<String> subWordList = new ArrayList(); subWordList.addAll(Arrays.asList(wordList.get(wl).split(" "))); for (int swl = 0; swl < subWordList.size(); swl++) { String word = subWordList.get(swl); stemmer.setCurrent(word); //set string you need to stem stemmer.stem();/*w ww . j a v a2s . com*/ String stemmedWord = stemmer.getCurrent(); subWordList.set(swl, stemmedWord); } wordList.set(wl, StringUtils.join(subWordList, " ")); //logger.info("NEW WORD: " + wordList.get(wl)); } return wordList; }
From source file:com.predic8.membrane.core.transport.http.ConnectionManager.java
private int closeOldConnections() { ArrayList<ConnectionKey> toRemove = new ArrayList<ConnectionKey>(); ArrayList<Connection> toClose = new ArrayList<Connection>(); long now = System.currentTimeMillis(); log.trace("closing old connections"); int closed = 0, remaining; synchronized (this) { // close connections after their timeout for (Map.Entry<ConnectionKey, ArrayList<OldConnection>> e : availableConnections.entrySet()) { ArrayList<OldConnection> l = e.getValue(); for (int i = 0; i < l.size(); i++) { OldConnection o = l.get(i); if (o.deathTime < now) { // replace [i] by [last] if (i == l.size() - 1) l.remove(i);// w w w.j av a2s .com else l.set(i, l.remove(l.size() - 1)); --i; closed++; toClose.add(o.connection); } } if (l.isEmpty()) toRemove.add(e.getKey()); } for (ConnectionKey remove : toRemove) availableConnections.remove(remove); remaining = availableConnections.size(); } for (Connection c : toClose) { try { c.close(); } catch (Exception e) { // do nothing } } if (closed != 0) log.debug("closed " + closed + " connections"); return remaining; }
From source file:com.ge.research.semtk.load.DataCleaner.java
/** * Take a row of data and converts appropriate values to lower case. * @param row the input row of data/*ww w . j ava2 s .c o m*/ * @return cleaned rows of data */ private ArrayList<String> performLowerCase(ArrayList<String> row) { String header; String value; for (int i = 0; i < row.size(); i++) { // for each value in the row value = row.get(i); header = headers.get(i); if (columnsToLowerCase.contains(header)) { row.set(i, value.toLowerCase()); } } return row; }
From source file:org.apache.sysml.runtime.codegen.SpoofOperator.java
protected SideInput[] prepInputMatrices(ArrayList<MatrixBlock> inputs, int offset, int len, boolean denseOnly, boolean tB1) { SideInput[] b = new SideInput[len]; for (int i = offset; i < offset + len; i++) { //decompress if necessary if (inputs.get(i) instanceof CompressedMatrixBlock) inputs.set(i, ((CompressedMatrixBlock) inputs.get(i)).decompress()); //transpose if necessary int clen = inputs.get(i).getNumColumns(); MatrixBlock in = (tB1 && i == 1) ? LibMatrixReorg.transpose(inputs.get(i), new MatrixBlock(clen, inputs.get(i).getNumRows(), false)) : inputs.get(i); //create side input if (denseOnly && (in.isInSparseFormat() || !in.isAllocated())) { //convert empty or sparse to dense temporary block (note: we don't do //this in place because this block might be used by multiple threads) if (in.getNumColumns() == 1 && in.isEmptyBlock(false)) //dense empty b[i - offset] = new SideInput(null, null, clen); else { b[i - offset] = new SideInput(DataConverter.convertToDenseBlock(in, false), null, clen); LOG.warn(getClass().getName() + ": Converted " + in.getNumRows() + "x" + in.getNumColumns() + ", nnz=" + in.getNonZeros() + " sideways input matrix from sparse to dense."); }/*from ww w . j a va2 s. c om*/ } else if (in.isInSparseFormat() || !in.isAllocated()) { b[i - offset] = new SideInput(null, in, clen); } else { b[i - offset] = new SideInput(in.getDenseBlock(), null, clen); } } return b; }
From source file:org.talend.designer.scd.util.TableEditorManager.java
public void addEditor(TableItem item, int column, TableEditor editor) { ArrayList<TableEditor> editors = (ArrayList<TableEditor>) editorMap.get(item); if (editors == null) { editors = new ArrayList<TableEditor>(); editorMap.put(item, editors);/*from w ww.j a va2 s . com*/ } if (editors.size() <= column) { for (int i = editors.size(); i <= column; i++) { // add place holder to prevent index out of bound exception editors.add(null); } } editors.set(column, editor); }
From source file:com.sillelien.dollar.api.types.DollarList.java
@NotNull @Override//from ww w . j a v a 2 s .c o m public var $set(@NotNull var key, Object value) { ArrayList<var> newVal = new ArrayList<>(list.mutable()); if (key.integer()) { newVal.set(key.toInteger(), DollarFactory.fromValue(value)); } else { return DollarFactory.failure(ErrorType.INVALID_LIST_OPERATION); } return DollarFactory.fromValue(newVal, errors()); }
From source file:com.maxl.java.aips2xml.Aips2Xml.java
static void extractPackageInfo() { try {//w ww . j av a 2 s .c om long startTime = System.currentTimeMillis(); if (SHOW_LOGS) System.out.print("- Processing packages xls ... "); // Load Swissmedic xls file FileInputStream packages_file = new FileInputStream(FILE_PACKAGES_XLS); // Get workbook instance for XLS file (HSSF = Horrible SpreadSheet Format) HSSFWorkbook packages_workbook = new HSSFWorkbook(packages_file); // Get first sheet from workbook HSSFSheet packages_sheet = packages_workbook.getSheetAt(0); // Iterate through all rows of first sheet Iterator<Row> rowIterator = packages_sheet.iterator(); int num_rows = 0; while (rowIterator.hasNext()) { Row row = rowIterator.next(); if (num_rows > 3) { String swissmedic_no5 = ""; // SwissmedicNo5 registration number (5 digits) String sequence_name = ""; String package_id = ""; String swissmedic_no8 = ""; // SwissmedicNo8 = SwissmedicNo5 + Package id (8 digits) String heilmittel_code = ""; String package_size = ""; String package_unit = ""; String swissmedic_cat = ""; String application_area = ""; String public_price = ""; String exfactory_price = ""; String therapeutic_index = ""; String withdrawn_str = ""; String speciality_str = ""; String plimitation_str = ""; String add_info_str = ""; // Contains additional information separated by ; // 0: Zulassungsnnr, 1: Sequenz, 2: Sequenzname, 3: Zulassunginhaberin, 4: T-Nummer, 5: ATC-Code, 6: Heilmittelcode // 7: Erstzulassung Prparat, 8: Zulassungsdatum Sequenz, 9: Gltigkeitsdatum, 10: Verpackung, 11: Packungsgrsse // 12: Einheit, 13: Abgabekategorie, 14: Wirkstoff, 15: Zusammensetzung, 16: Anwendungsgebiet Prparat, 17: Anwendungsgebiet Sequenz swissmedic_no5 = getAnyValue(row.getCell(0)); // Swissmedic registration number (5 digits) sequence_name = getAnyValue(row.getCell(2)); // Sequence name heilmittel_code = getAnyValue(row.getCell(6)); package_size = getAnyValue(row.getCell(11)); package_unit = getAnyValue(row.getCell(12)); swissmedic_cat = getAnyValue(row.getCell(13)); application_area = getAnyValue(row.getCell(16)); if (row.getCell(10) != null) { package_id = getAnyValue(row.getCell(10)); swissmedic_no8 = swissmedic_no5 + package_id; // Fill in row ArrayList<String> pack = new ArrayList<String>(); pack.add(swissmedic_no5); // 0 pack.add(sequence_name); // 1 pack.add(heilmittel_code); // 2 pack.add(package_size); // 3 pack.add(package_unit); // 4 pack.add(swissmedic_cat); // 5 if (!application_area.isEmpty()) pack.add(application_area + " (Swissmedic)\n"); // 6 = swissmedic + bag else pack.add(""); pack.add(public_price); // 7 pack.add(exfactory_price); // 8 pack.add(therapeutic_index); // 9 pack.add(withdrawn_str); // 10 pack.add(speciality_str); // 11 pack.add(plimitation_str); // 12 pack.add(add_info_str); // 13 package_info.put(swissmedic_no8, pack); } } num_rows++; } long stopTime = System.currentTimeMillis(); if (SHOW_LOGS) { System.out.println( (package_info.size() + 1) + " packages in " + (stopTime - startTime) / 1000.0f + " sec"); } startTime = System.currentTimeMillis(); if (SHOW_LOGS) System.out.print("- Processing atc classes xls ... "); if (DB_LANGUAGE.equals("de")) { // Load ATC classes xls file FileInputStream atc_classes_file = new FileInputStream(FILE_ATC_CLASSES_XLS); // Get workbook instance for XLS file (HSSF = Horrible SpreadSheet Format) HSSFWorkbook atc_classes_workbook = new HSSFWorkbook(atc_classes_file); // Get first sheet from workbook HSSFSheet atc_classes_sheet = atc_classes_workbook.getSheetAt(1); // Iterate through all rows of first sheet rowIterator = atc_classes_sheet.iterator(); num_rows = 0; while (rowIterator.hasNext()) { Row row = rowIterator.next(); if (num_rows > 2) { String atc_code = ""; String atc_class = ""; if (row.getCell(0) != null) { atc_code = row.getCell(0).getStringCellValue().replaceAll("\\s", ""); } if (row.getCell(2) != null) { atc_class = row.getCell(2).getStringCellValue(); } // Build a full map atc code to atc class if (atc_code.length() > 0) { atc_map.put(atc_code, atc_class); } } num_rows++; } } else if (DB_LANGUAGE.equals("fr")) { // Load multilinguagl ATC classes txt file String atc_classes_multi = readFromFile(FILE_ATC_MULTI_LINGUAL_TXT); // Loop through all lines Scanner scanner = new Scanner(atc_classes_multi); while (scanner.hasNextLine()) { String line = scanner.nextLine(); List<String> atc_class = Arrays.asList(line.split(": ")); String atc_code = atc_class.get(0); String[] atc_classes_str = atc_class.get(1).split(";"); String atc_class_french = atc_classes_str[1].trim(); atc_map.put(atc_code, atc_class_french); } scanner.close(); } stopTime = System.currentTimeMillis(); if (SHOW_LOGS) System.out .println((atc_map.size() + 1) + " classes in " + (stopTime - startTime) / 1000.0f + " sec"); // Load Refdata xml file File refdata_xml_file = null; if (DB_LANGUAGE.equals("de")) refdata_xml_file = new File(FILE_REFDATA_PHARMA_DE_XML); else if (DB_LANGUAGE.equals("fr")) refdata_xml_file = new File(FILE_REFDATA_PHARMA_FR_XML); else { System.err.println("ERROR: DB_LANGUAGE undefined"); System.exit(1); } FileInputStream refdata_fis = new FileInputStream(refdata_xml_file); startTime = System.currentTimeMillis(); if (SHOW_LOGS) System.out.print("- Unmarshalling Refdata Pharma " + DB_LANGUAGE + " ... "); JAXBContext context = JAXBContext.newInstance(Pharma.class); Unmarshaller um = context.createUnmarshaller(); Pharma refdataPharma = (Pharma) um.unmarshal(refdata_fis); List<Pharma.ITEM> pharma_list = refdataPharma.getItem(); String smno8; for (Pharma.ITEM pharma : pharma_list) { String ean_code = pharma.getGtin(); if (ean_code.length() == 13) { smno8 = ean_code.substring(4, 12); // Extract pharma corresponding to swissmedicno8 ArrayList<String> pi_row = package_info.get(smno8); // Replace sequence_name if (pi_row != null) { if (pharma.getAddscr().length() > 0) pi_row.set(1, pharma.getDscr() + ", " + pharma.getAddscr()); else pi_row.set(1, pharma.getDscr()); if (pharma.getStatus().equals("I")) { if (DB_LANGUAGE.equals("de")) pi_row.set(10, "a.H."); else if (DB_LANGUAGE.equals("fr")) pi_row.set(10, "p.c."); } } else { if (SHOW_ERRORS) System.err.println(">> Does not exist in BAG xls: " + smno8 + " (" + pharma.getDscr() + ", " + pharma.getAddscr() + ")"); } } else if (ean_code.length() < 13) { if (SHOW_ERRORS) System.err.println(">> EAN code too short: " + ean_code + ": " + pharma.getDscr()); } else if (ean_code.length() > 13) { if (SHOW_ERRORS) System.err.println(">> EAN code too long: " + ean_code + ": " + pharma.getDscr()); } } stopTime = System.currentTimeMillis(); if (SHOW_LOGS) System.out.println(pharma_list.size() + " medis in " + (stopTime - startTime) / 1000.0f + " sec"); // Load BAG xml file File bag_xml_file = new File(FILE_PREPARATIONS_XML); FileInputStream fis_bag = new FileInputStream(bag_xml_file); startTime = System.currentTimeMillis(); if (SHOW_LOGS) System.out.print("- Processing preparations xml ... "); context = JAXBContext.newInstance(Preparations.class); um = context.createUnmarshaller(); Preparations prepInfos = (Preparations) um.unmarshal(fis_bag); List<Preparations.Preparation> prep_list = prepInfos.getPreparations(); int num_preparations = 0; for (Preparations.Preparation prep : prep_list) { String swissmedicno5_str = prep.getSwissmedicNo5(); if (swissmedicno5_str != null) { String orggencode_str = ""; // "O", "G" or empty -> "" String flagSB20_str = ""; // "Y" -> 20% or "N" -> 10% if (prep.getOrgGenCode() != null) orggencode_str = prep.getOrgGenCode(); if (prep.getFlagSB20() != null) { flagSB20_str = prep.getFlagSB20(); if (flagSB20_str.equals("Y")) { if (DB_LANGUAGE.equals("de")) flagSB20_str = "SB 20%"; else if (DB_LANGUAGE.equals("fr")) flagSB20_str = "QP 20%"; } else if (flagSB20_str.equals("N")) { if (DB_LANGUAGE.equals("de")) flagSB20_str = "SB 10%"; else if (DB_LANGUAGE.equals("fr")) flagSB20_str = "QP 10%"; } else flagSB20_str = ""; } add_info_map.put(swissmedicno5_str, orggencode_str + ";" + flagSB20_str); } List<Preparation.Packs> packs_list = prep.getPacks(); for (Preparation.Packs packs : packs_list) { // Extract codes for therapeutic index / classification String bag_application = ""; String therapeutic_code = ""; List<Preparations.Preparation.ItCodes> itcode_list = prep.getItCodes(); for (Preparations.Preparation.ItCodes itc : itcode_list) { List<Preparations.Preparation.ItCodes.ItCode> code_list = itc.getItCode(); int index = 0; for (Preparations.Preparation.ItCodes.ItCode code : code_list) { if (index == 0) { if (DB_LANGUAGE.equals("de")) therapeutic_code = code.getDescriptionDe(); else if (DB_LANGUAGE.equals("fr")) therapeutic_code = code.getDescriptionFr(); } else { if (DB_LANGUAGE.equals("de")) bag_application = code.getDescriptionDe(); else if (DB_LANGUAGE.equals("fr")) bag_application = code.getDescriptionFr(); } index++; } } // Generate new package info List<Preparation.Packs.Pack> pack_list = packs.getPack(); for (Preparation.Packs.Pack pack : pack_list) { // Get SwissmedicNo8 and used it as a key to extract all the relevant package info String swissMedicNo8 = pack.getSwissmedicNo8(); ArrayList<String> pi_row = package_info.get(swissMedicNo8); // Preparation also in BAG xml file (we have a price) if (pi_row != null) { // Update Swissmedic catory if necessary ("N->A", Y->"A+") if (pack.getFlagNarcosis().equals("Y")) pi_row.set(5, pi_row.get(5) + "+"); // Extract point limitations List<Preparations.Preparation.Packs.Pack.PointLimitations> point_limits = pack .getPointLimitations(); for (Preparations.Preparation.Packs.Pack.PointLimitations limits : point_limits) { List<Preparations.Preparation.Packs.Pack.PointLimitations.PointLimitation> plimits_list = limits .getPointLimitation(); if (plimits_list.size() > 0) if (plimits_list.get(0) != null) pi_row.set(12, ", LIM" + plimits_list.get(0).getPoints() + ""); } // Extract exfactory and public prices List<Preparations.Preparation.Packs.Pack.Prices> price_list = pack.getPrices(); for (Preparations.Preparation.Packs.Pack.Prices price : price_list) { List<Preparations.Preparation.Packs.Pack.Prices.PublicPrice> public_price = price .getPublicPrice(); List<Preparations.Preparation.Packs.Pack.Prices.ExFactoryPrice> exfactory_price = price .getExFactoryPrice(); if (exfactory_price.size() > 0) { try { float f = Float.valueOf(exfactory_price.get(0).getPrice()); String ep = String.format("%.2f", f); pi_row.set(8, "CHF " + ep); } catch (NumberFormatException e) { if (SHOW_ERRORS) System.err.println("Number format exception (exfactory price): " + swissMedicNo8 + " (" + public_price.size() + ")"); } } if (public_price.size() > 0) { try { float f = Float.valueOf(public_price.get(0).getPrice()); String pp = String.format("%.2f", f); pi_row.set(7, "CHF " + pp); if (DB_LANGUAGE.equals("de")) pi_row.set(11, ", SL"); else if (DB_LANGUAGE.equals("fr")) pi_row.set(11, ", LS"); } catch (NumberFormatException e) { if (SHOW_ERRORS) System.err.println("Number format exception (public price): " + swissMedicNo8 + " (" + public_price.size() + ")"); } } // Add application area and therapeutic code if (!bag_application.isEmpty()) pi_row.set(6, pi_row.get(6) + bag_application + " (BAG)"); pi_row.set(9, therapeutic_code); } } } } num_preparations++; } stopTime = System.currentTimeMillis(); if (SHOW_LOGS) System.out.println( num_preparations + " preparations in " + (stopTime - startTime) / 1000.0f + " sec"); // Loop through all SwissmedicNo8 numbers for (Map.Entry<String, ArrayList<String>> entry : package_info.entrySet()) { String swissmedicno8 = entry.getKey(); ArrayList<String> pi_row = entry.getValue(); } } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } catch (JAXBException e) { e.printStackTrace(); } }