List of usage examples for java.io BufferedReader close
public void close() throws IOException
From source file:io.s4.util.AvroSchemaSupplementer.java
public static void main(String args[]) { if (args.length < 1) { System.err.println("No schema filename specified"); System.exit(1);/*from w ww .j a va 2 s .com*/ } String filename = args[0]; FileReader fr = null; BufferedReader br = null; InputStreamReader isr = null; try { if (filename == "-") { isr = new InputStreamReader(System.in); br = new BufferedReader(isr); } else { fr = new FileReader(filename); br = new BufferedReader(fr); } String inputLine = ""; StringBuffer jsonBuffer = new StringBuffer(); while ((inputLine = br.readLine()) != null) { jsonBuffer.append(inputLine); } JSONObject jsonRecord = new JSONObject(jsonBuffer.toString()); JSONObject keyPathElementSchema = new JSONObject(); keyPathElementSchema.put("name", "KeyPathElement"); keyPathElementSchema.put("type", "record"); JSONArray fieldsArray = new JSONArray(); JSONObject fieldRecord = new JSONObject(); fieldRecord.put("name", "index"); JSONArray typeArray = new JSONArray("[\"int\", \"null\"]"); fieldRecord.put("type", typeArray); fieldsArray.put(fieldRecord); fieldRecord = new JSONObject(); fieldRecord.put("name", "keyName"); typeArray = new JSONArray("[\"string\", \"null\"]"); fieldRecord.put("type", typeArray); fieldsArray.put(fieldRecord); keyPathElementSchema.put("fields", fieldsArray); JSONObject keyInfoSchema = new JSONObject(); keyInfoSchema.put("name", "KeyInfo"); keyInfoSchema.put("type", "record"); fieldsArray = new JSONArray(); fieldRecord = new JSONObject(); fieldRecord.put("name", "keyPath"); typeArray = new JSONArray("[\"string\", \"null\"]"); fieldRecord.put("type", typeArray); fieldsArray.put(fieldRecord); fieldRecord = new JSONObject(); fieldRecord.put("name", "fullKeyPath"); typeArray = new JSONArray("[\"string\", \"null\"]"); fieldRecord.put("type", typeArray); fieldsArray.put(fieldRecord); fieldRecord = new JSONObject(); fieldRecord.put("name", "keyPathElementList"); JSONObject typeRecord = new JSONObject(); typeRecord.put("type", "array"); typeRecord.put("items", keyPathElementSchema); fieldRecord.put("type", typeRecord); fieldsArray.put(fieldRecord); keyInfoSchema.put("fields", fieldsArray); JSONObject partitionInfoSchema = new JSONObject(); partitionInfoSchema.put("name", "PartitionInfo"); partitionInfoSchema.put("type", "record"); fieldsArray = new JSONArray(); fieldRecord = new JSONObject(); fieldRecord.put("name", "partitionId"); typeArray = new JSONArray("[\"int\", \"null\"]"); fieldRecord.put("type", typeArray); fieldsArray.put(fieldRecord); fieldRecord = new JSONObject(); fieldRecord.put("name", "compoundKey"); typeArray = new JSONArray("[\"string\", \"null\"]"); fieldRecord.put("type", typeArray); fieldsArray.put(fieldRecord); fieldRecord = new JSONObject(); fieldRecord.put("name", "compoundValue"); typeArray = new JSONArray("[\"string\", \"null\"]"); fieldRecord.put("type", typeArray); fieldsArray.put(fieldRecord); fieldRecord = new JSONObject(); fieldRecord.put("name", "keyInfoList"); typeRecord = new JSONObject(); typeRecord.put("type", "array"); typeRecord.put("items", keyInfoSchema); fieldRecord.put("type", typeRecord); fieldsArray.put(fieldRecord); partitionInfoSchema.put("fields", fieldsArray); fieldRecord = new JSONObject(); fieldRecord.put("name", "S4__PartitionInfo"); typeRecord = new JSONObject(); typeRecord.put("type", "array"); typeRecord.put("items", partitionInfoSchema); fieldRecord.put("type", typeRecord); fieldsArray = jsonRecord.getJSONArray("fields"); fieldsArray.put(fieldRecord); System.out.println(jsonRecord.toString(3)); } catch (Exception ioe) { throw new RuntimeException(ioe); } finally { if (br != null) try { br.close(); } catch (Exception e) { } if (isr != null) try { isr.close(); } catch (Exception e) { } if (fr != null) try { fr.close(); } catch (Exception e) { } } }
From source file:com.genentech.struchk.oeStruchk.OEStruchk.java
/** * Command line interface to {@link OEStruchk}. *///from ww w.ja v a 2 s.c o m public static void main(String[] args) throws ParseException, JDOMException, IOException { long start = System.currentTimeMillis(); int nMessages = 0; int nErrors = 0; int nStruct = 0; System.err.printf("OEChem Version: %s\n", oechem.OEChemGetVersion()); // create command line Options object Options options = new Options(); Option opt = new Option("f", true, "specify the configuration file name"); opt.setRequired(false); options.addOption(opt); opt = new Option("noMsg", false, "Do not add any additional sd-tags to the sdf file"); options.addOption(opt); opt = new Option("printRules", true, "Print HTML listing all the rules to filename."); options.addOption(opt); opt = new Option("errorsAsWarnings", false, "Treat errors as warnings."); options.addOption(opt); opt = new Option("stopForDebug", false, "Stop and read from stdin for user tu start debugger."); options.addOption(opt); CommandLineParser parser = new PosixParser(); CommandLine cmd = parser.parse(options, args); args = cmd.getArgs(); if (cmd.hasOption("stopForDebug")) { BufferedReader localRdr = new BufferedReader(new InputStreamReader(System.in)); System.err.print("Please press return:"); localRdr.readLine(); } URL confFile; if (cmd.hasOption("f")) { confFile = new File(cmd.getOptionValue("f")).toURI().toURL(); } else { confFile = getResourceURL(OEStruchk.class, "Struchk.xml"); } boolean errorsAsWarnings = cmd.hasOption("errorsAsWarnings"); if (cmd.hasOption("printRules")) { String fName = cmd.getOptionValue("printRules"); PrintStream out = new PrintStream(new BufferedOutputStream(new FileOutputStream(fName))); OEStruchk structFlagAssigner = new OEStruchk(confFile, CHECKConfig.ASSIGNStructFlag, errorsAsWarnings); structFlagAssigner.printRules(out); out.close(); return; } if (args.length < 1) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("oeStruck", options); throw new Error("missing input file\n"); } BufferedReader in = null; try { in = new BufferedReader(new FileReader(args[0])); StringBuilder mol = new StringBuilder(); StringBuilder data = new StringBuilder(); PrintStream out = System.out; if (args.length > 1) out = new PrintStream(args[1]); // create OEStruchk from config file OEStruchk structFlagAssigner = new OEStruchk(confFile, CHECKConfig.ASSIGNStructFlag, errorsAsWarnings); OEStruchk structFlagChecker = new OEStruchk(confFile, CHECKConfig.CHECKStructFlag, errorsAsWarnings); Pattern sFlagPat = Pattern.compile("<StructFlag>\\s*([^\\n\\r]+)"); String line; boolean inMolFile = true; boolean atEnd = false; while (!atEnd) { if ((line = in.readLine()) == null) { if ("".equals(mol.toString().trim())) break; if (!inMolFile) throw new Error("Invalid end of sd file!"); line = "$$$$"; atEnd = true; } if (line.startsWith("$$$$")) { OEStruchk oeStruchk; StructureFlag sFlag = null; Matcher mat = sFlagPat.matcher(data); if (!mat.find()) { oeStruchk = structFlagAssigner; } else { oeStruchk = structFlagChecker; sFlag = StructureFlag.fromString(mat.group(1)); } if (!oeStruchk.applyRules(mol.toString(), null, sFlag)) nErrors++; out.print(oeStruchk.getTransformedMolfile(null)); out.print(data); if (!cmd.hasOption("noMsg")) { List<Message> msgs = oeStruchk.getStructureMessages(null); if (msgs.size() > 0) { nMessages += msgs.size(); out.println("> <errors_oe2>"); for (Message msg : msgs) out.printf("%s: %s\n", msg.getLevel(), msg.getText()); out.println(); } //System.err.println(oeStruchk.getTransformedMolfile("substance")); out.printf("> <outStereo>\n%s\n\n", oeStruchk.getStructureFlag().getName()); out.printf("> <TISM>\n%s\n\n", oeStruchk.getTransformedIsoSmiles(null)); out.printf("> <TSMI>\n%s\n\n", oeStruchk.getTransformedSmiles(null)); out.printf("> <pISM>\n%s\n\n", oeStruchk.getTransformedIsoSmiles("parent")); out.printf("> <salt>\n%s\n\n", oeStruchk.getSaltCode()); out.printf("> <stereoCounts>\n%s.%s\n\n", oeStruchk.countChiralCentersStr(), oeStruchk.countStereoDBondStr()); } out.println(line); nStruct++; mol.setLength(0); data.setLength(0); inMolFile = true; } else if (!inMolFile || line.startsWith(">")) { inMolFile = false; data.append(line).append("\n"); } else { mol.append(line).append("\n"); } } structFlagAssigner.delete(); structFlagChecker.delete(); } catch (Exception e) { throw new Error(e); } finally { System.err.printf("Checked %d structures %d errors, %d messages in %dsec\n", nStruct, nErrors, nMessages, (System.currentTimeMillis() - start) / 1000); if (in != null) in.close(); } if (cmd.hasOption("stopForDebug")) { BufferedReader localRdr = new BufferedReader(new InputStreamReader(System.in)); System.err.print("Please press return:"); localRdr.readLine(); } }
From source file:net.sf.extjwnl.cli.ewn.java
public static void main(String[] args) throws IOException, JWNLException { if (args.length < 1) { System.out.println(USAGE); System.exit(0);// w w w .j av a 2 s . c om } //find dictionary Dictionary d = null; File config = new File(defaultConfig); if (!config.exists()) { if (System.getenv().containsKey("WNHOME")) { String wnHomePath = System.getenv().get("WNHOME"); File wnHome = new File(wnHomePath); if (wnHome.exists()) { d = Dictionary.getFileBackedInstance(wnHomePath); } else { log.error("Cannot find dictionary. Make sure " + defaultConfig + " is available or WNHOME variable is set."); } } } else { d = Dictionary.getInstance(new FileInputStream(config)); } if (null != d) { //parse and execute command line if ((-1 < args[0].indexOf('%') && -1 < args[0].indexOf(':')) || "-script".equals(args[0]) || (-1 < args[0].indexOf('#'))) { d.edit(); //edit if ("-script".equals(args[0])) { if (args.length < 2) { log.error("Filename missing for -script command"); System.exit(1); } else { File script = new File(args[1]); if (script.exists()) { //load into args ArrayList<String> newArgs = new ArrayList<String>(); BufferedReader in = new BufferedReader( new InputStreamReader(new FileInputStream(script), "UTF-8")); try { String str; while ((str = in.readLine()) != null) { String[] bits = str.split(" "); StringBuilder tempArg = null; for (String bit : bits) { int quoteCnt = 0; for (int j = 0; j < bit.length(); j++) { if ('"' == bit.charAt(j)) { quoteCnt++; } } if (null != tempArg) { if (0 == quoteCnt) { tempArg.append(" ").append(bit); } else { tempArg.append(" ").append(bit.replaceAll("\"\"", "\"")); if (1 == (quoteCnt % 2)) { newArgs.add( tempArg.toString().substring(1, tempArg.length() - 1)); tempArg = null; } } } else { if (0 == quoteCnt) { newArgs.add(bit); } else { if (1 == (quoteCnt % 2)) { tempArg = new StringBuilder(bit.replaceAll("\"\"", "\"")); } else { newArgs.add(bit.replaceAll("\"\"", "\"")); } } } } if (null != tempArg) { newArgs.add(tempArg.toString()); } } } finally { try { in.close(); } catch (IOException e) { //nop } } args = newArgs.toArray(args); } } } Word workWord = null; String key = null; String lemma = null; int lexFileNum = -1; int lexId = -1; // String headLemma = null; // int headLexId = -1; POS pos = null; String derivation = null; for (int i = 0; i < args.length; i++) { if (null == key && '-' != args[i].charAt(0) && ((-1 < args[i].indexOf('%') && -1 < args[i].indexOf(':')))) { key = args[i]; log.info("Searching " + key + "..."); if (null != key) { workWord = d.getWordBySenseKey(key); } if (null == workWord) { //parse sensekey lemma = key.substring(0, key.indexOf('%')).replace('_', ' '); String posId = key.substring(key.indexOf('%') + 1, key.indexOf(':')); if ("1".equals(posId) || "2".equals(posId) || "3".equals(posId) || "4".equals(posId) || "5".equals(posId)) { pos = POS.getPOSForId(Integer.parseInt(posId)); String lexFileString = key.substring(key.indexOf(':') + 1); if (-1 < lexFileString.indexOf(':')) { lexFileNum = Integer .parseInt(lexFileString.substring(0, lexFileString.indexOf(':'))); if (lexFileString.indexOf(':') + 1 < lexFileString.length()) { String lexIdString = lexFileString .substring(lexFileString.indexOf(':') + 1); if (-1 < lexIdString.indexOf(':')) { lexId = Integer .parseInt(lexIdString.substring(0, lexIdString.indexOf(':'))); // if (lexIdString.indexOf(':') + 1 < lexIdString.length()) { // headLemma = lexIdString.substring(lexIdString.indexOf(':') + 1); // if (-1 < headLemma.indexOf(':')) { // headLemma = headLemma.substring(0, headLemma.indexOf(':')); // if (null != headLemma && !"".equals(headLemma) && lexIdString.lastIndexOf(':') + 1 < lexIdString.length()) { // headLexId = Integer.parseInt(lexIdString.substring(lexIdString.lastIndexOf(':') + 1)); // } // } else { // log.error("Malformed sensekey " + key); // System.exit(1); // } // } } else { log.error("Malformed sensekey " + key); System.exit(1); } } else { log.error("Malformed sensekey " + key); System.exit(1); } } else { log.error("Malformed sensekey " + key); System.exit(1); } } else { log.error("Malformed sensekey " + key); System.exit(1); } } } else if (-1 < args[i].indexOf('#')) { if (2 < args[i].length()) { derivation = args[i].substring(2); if (null == derivation) { log.error("Missing derivation"); System.exit(1); } else { pos = POS.getPOSForKey(args[i].substring(0, 1)); if (null == pos) { log.error("POS " + args[i] + " is not recognized for derivation " + derivation); System.exit(1); } } } } if ("-add".equals(args[i])) { if (null == key) { log.error("Missing sensekey"); System.exit(1); } if (null != workWord) { log.error("Duplicate sensekey " + workWord.getSenseKey()); System.exit(1); } log.info("Creating " + pos.getLabel() + " synset..."); Synset tempSynset = d.createSynset(pos); log.info("Creating word " + lemma + "..."); workWord = new Word(d, tempSynset, 1, lemma); workWord.setLexId(lexId); tempSynset.getWords().add(workWord); tempSynset.setLexFileNum(lexFileNum); key = null; } if ("-remove".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { d.removeSynset(workWord.getSynset()); workWord = null; key = null; } } if ("-addword".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length && '-' != args[i].charAt(0)) { Word tempWord = new Word(d, workWord.getSynset(), workWord.getSynset().getWords().size() + 1, args[i]); workWord.getSynset().getWords().add(tempWord); key = null; } else { log.error( "Missing word for addword command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-removeword".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { workWord.getSynset().getWords().remove(workWord); key = null; } } if ("-setgloss".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length && '-' != args[i].charAt(0)) { workWord.getSynset().setGloss(args[i]); key = null; } else { log.error("Missing gloss for setgloss command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-setadjclus".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length && '-' != args[i].charAt(0)) { workWord.getSynset().setIsAdjectiveCluster(Boolean.parseBoolean(args[i])); key = null; } else { log.error("Missing flag for setadjclus command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-setverbframe".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length) { if (workWord instanceof Verb) { Verb verb = (Verb) workWord; if ('-' == args[i].charAt(0)) { verb.getVerbFrameFlags().clear(Integer.parseInt(args[i].substring(1))); } else { verb.getVerbFrameFlags().set(Integer.parseInt(args[i])); } } else { log.error("Word at " + workWord.getSenseKey() + " should be verb"); System.exit(1); } key = null; } else { log.error("Missing index for setverbframe command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-setverbframeall".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length) { if (workWord.getSynset() instanceof VerbSynset) { if ('-' == args[i].charAt(0)) { workWord.getSynset().getVerbFrameFlags() .clear(Integer.parseInt(args[i].substring(1))); } else { workWord.getSynset().getVerbFrameFlags().set(Integer.parseInt(args[i])); } } else { log.error("Synset at " + workWord.getSenseKey() + " should be verb"); System.exit(1); } key = null; } else { log.error("Missing index for setverbframeall command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-setlexfile".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length && '-' != args[i].charAt(0)) { if (-1 < args[i].indexOf('.')) { workWord.getSynset() .setLexFileNum(LexFileNameLexFileIdMap.getMap().get(args[i])); } else { workWord.getSynset().setLexFileNum(Integer.parseInt(args[i])); } } else { log.error("Missing file number or name for setlexfile command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-addptr".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length) { Word targetWord = d.getWordBySenseKey(args[i]); if (null != targetWord) { i++; if (i < args.length) { PointerType pt = PointerType.getPointerTypeForKey(args[i]); if (null != pt) { Pointer p; if (pt.isLexical()) { p = new Pointer(pt, workWord, targetWord); } else { p = new Pointer(pt, workWord.getSynset(), targetWord.getSynset()); } if (!workWord.getSynset().getPointers().contains(p)) { workWord.getSynset().getPointers().add(p); } else { log.error("Duplicate pointer of type " + pt + " to " + targetWord.getSenseKey() + " in addptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } } else { log.error("Invalid pointer type at " + args[i] + " in addptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } } else { log.error("Missing pointer type at " + args[i] + " in addptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } } else { log.error("Missing target at " + args[i] + " in addptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } key = null; } else { log.error("Missing sensekey for addptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-removeptr".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length) { Word targetWord = d.getWordBySenseKey(args[i]); if (null != targetWord) { i++; if (i < args.length) { PointerType pt = PointerType.getPointerTypeForKey(args[i]); if (null != pt) { Pointer p; if (pt.isLexical()) { p = new Pointer(pt, workWord, targetWord); } else { p = new Pointer(pt, workWord.getSynset(), targetWord.getSynset()); } if (workWord.getSynset().getPointers().contains(p)) { workWord.getSynset().getPointers().remove(p); } else { log.error("Missing pointer of type " + pt + " to " + targetWord.getSenseKey() + " in removeptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } } else { log.error("Invalid pointer type at " + args[i] + " in removeptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } } else { log.error("Missing pointer type at " + args[i] + " in removeptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } } else { log.error("Missing target at " + args[i] + " in removeptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } key = null; } else { log.error("Missing sensekey for removeptr command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-setlexid".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length && '-' != args[i].charAt(0)) { workWord.setLexId(Integer.parseInt(args[i])); key = null; } else { log.error("Missing lexid for setlexid command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-setusecount".equals(args[i])) { if (null == workWord) { log.error("Missing sensekey"); System.exit(1); } else { i++; if (i < args.length && '-' != args[i].charAt(0)) { workWord.setUseCount(Integer.parseInt(args[i])); key = null; } else { log.error("Missing count for setusecount command for sensekey " + workWord.getSenseKey()); System.exit(1); } } } if ("-addexc".equals(args[i])) { i++; if (i < args.length && '-' != args[i].charAt(0)) { String baseform = args[i]; Exc e = d.getException(pos, derivation); if (null != e) { if (null != e.getExceptions()) { if (!e.getExceptions().contains(baseform)) { e.getExceptions().add(baseform); } } } else { ArrayList<String> list = new ArrayList<String>(1); list.add(baseform); d.createException(pos, derivation, list); } derivation = null; } else { log.error("Missing baseform for addexc command for derivation " + derivation); System.exit(1); } } if ("-removeexc".equals(args[i])) { Exc e = d.getException(pos, derivation); if (null != e) { i++; if (i < args.length && '-' != args[i].charAt(0)) { String baseform = args[i]; if (null != e.getExceptions()) { if (e.getExceptions().contains(baseform)) { e.getExceptions().remove(baseform); } if (0 == e.getExceptions().size()) { d.removeException(e); } } } else { d.removeException(e); } } else { log.error("Missing derivation " + derivation); System.exit(1); } derivation = null; } } d.save(); } else { //browse String key = args[0]; if (1 == args.length) { for (POS pos : POS.getAllPOS()) { IndexWord iw = d.getIndexWord(pos, key); if (null == iw) { System.out.println("\nNo information available for " + pos.getLabel() + " " + key); } else { System.out.println( "\nInformation available for " + iw.getPOS().getLabel() + " " + iw.getLemma()); printAvailableInfo(iw); } if (null != d.getMorphologicalProcessor()) { List<String> forms = d.getMorphologicalProcessor().lookupAllBaseForms(pos, key); if (null != forms) { for (String form : forms) { if (!key.equals(form)) { iw = d.getIndexWord(pos, form); if (null != iw) { System.out.println("\nInformation available for " + iw.getPOS().getLabel() + " " + iw.getLemma()); printAvailableInfo(iw); } } } } } } } else { boolean needHelp = false; boolean needGloss = false; boolean needLex = false; boolean needOffset = false; boolean needSenseNum = false; boolean needSenseKeys = false; int needSense = 0; for (String arg : args) { if ("-h".equals(arg)) { needHelp = true; } if ("-g".equals(arg)) { needGloss = true; } if ("-a".equals(arg)) { needLex = true; } if ("-o".equals(arg)) { needOffset = true; } if ("-s".equals(arg)) { needSenseNum = true; } if ("-k".equals(arg)) { needSenseKeys = true; } if (arg.startsWith("-n") && 2 < arg.length()) { needSense = Integer.parseInt(arg.substring(2)); } } for (String arg : args) { if (arg.startsWith("-ants") && 6 == arg.length()) { if (needHelp) { System.out.println( "Display synsets containing direct antonyms of the search string.\n" + "\n" + "Direct antonyms are a pair of words between which there is an\n" + "associative bond built up by co-occurrences.\n" + "\n" + "Antonym synsets are preceded by \"=>\"."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nAntonyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.ANTONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //ants if (arg.startsWith("-hype") && 6 == arg.length()) { if (needHelp) { System.out.println( "Recursively display hypernym (superordinate) tree for the search\n" + "string.\n" + "\n" + "Hypernym is the generic term used to designate a whole class of\n" + "specific instances. Y is a hypernym of X if X is a (kind of) Y.\n" + "\n" + "Hypernym synsets are preceded by \"=>\", and are indented from\n" + "the left according to their level in the hierarchy."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nHypernyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.HYPERNYM, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //hype if (arg.startsWith("-hypo") && 6 == arg.length()) { if (needHelp) { System.out.println( "Display immediate hyponyms (subordinates) for the search string.\n" + "\n" + "Hyponym is the generic term used to designate a member of a class.\n" + "X is a hyponym of Y if X is a (kind of) Y.\n" + "\n" + "Hyponym synsets are preceded by \"=>\"."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nHyponyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.HYPONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //hypo if (arg.startsWith("-tree") && 6 == arg.length()) { if (needHelp) { System.out.println( "Display hyponym (subordinate) tree for the search string. This is\n" + "a recursive search that finds the hyponyms of each hyponym. \n" + "\n" + "Hyponym is the generic term used to designate a member of a class.\n" + "X is a hyponym of Y if X is a (kind of) Y. \n" + "\n" + "Hyponym synsets are preceded by \"=>\", and are indented from the left\n" + "according to their level in the hierarchy."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nHyponyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.HYPONYM, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //tree if (arg.startsWith("-enta") && 6 == arg.length()) { if (needHelp) { System.out.println( "Recursively display entailment relations of the search string.\n" + "\n" + "The action represented by the verb X entails Y if X cannot be done\n" + "unless Y is, or has been, done.\n" + "\n" + "Entailment synsets are preceded by \"=>\", and are indented from the left\n" + "according to their level in the hierarchy."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nEntailment of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.ENTAILMENT, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //enta if (arg.startsWith("-syns") && 6 == arg.length()) { POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nSynonyms of " + p.getLabel() + " " + iw.getLemma()); if (POS.ADJECTIVE == p) { if (needHelp) { System.out.println( "Display synonyms and synsets related to synsets containing\n" + "the search string. If the search string is in a head synset\n" + "the 'cluster's' satellite synsets are displayed. If the search\n" + "string is in a satellite synset, its head synset is displayed.\n" + "If the search string is a pertainym the word or synset that it\n" + "pertains to is displayed.\n" + "\n" + "A cluster is a group of adjective synsets that are organized around\n" + "antonymous pairs or triplets. An adjective cluster contains two or more\n" + "head synsets that contan antonyms. Each head synset has one or more\n" + "satellite synsets.\n" + "\n" + "A head synset contains at least one word that has a direct antonym\n" + "in another head synset of the same cluster.\n" + "\n" + "A satellite synset represents a concept that is similar in meaning to\n" + "the concept represented by its head synset.\n" + "\n" + "Direct antonyms are a pair of words between which there is an\n" + "associative bond built up by co-occurrences.\n" + "\n" + "Direct antonyms are printed in parentheses following the adjective.\n" + "The position of an adjective in relation to the noun may be restricted\n" + "to the prenominal, postnominal or predicative position. Where present\n" + "these restrictions are noted in parentheses.\n" + "\n" + "A pertainym is a relational adjective, usually defined by such phrases\n" + "as \"of or pertaining to\" and that does not have an antonym. It pertains\n" + "to a noun or another pertainym.\n" + "\n" + "Senses contained in head synsets are displayed above the satellites,\n" + "which are indented and preceded by \"=>\". Senses contained in\n" + "satellite synsets are displayed with the head synset below. The head\n" + "synset is preceded by \"=>\".\n" + "\n" + "Pertainym senses display the word or synsets that the search string\n" + "pertains to."); } tracePointers(iw, PointerType.SIMILAR_TO, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.PARTICIPLE_OF, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } if (POS.ADVERB == p) { if (needHelp) { System.out.println( "Display synonyms and synsets related to synsets containing\n" + "the search string. If the search string is a pertainym the word\n" + "or synset that it pertains to is displayed.\n" + "\n" + "A pertainym is a relational adverb that is derived from an adjective.\n" + "\n" + "Pertainym senses display the word that the search string is derived from\n" + "and the adjective synset that contains the word. If the adjective synset\n" + "is a satellite synset, its head synset is also displayed."); } tracePointers(iw, PointerType.PERTAINYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } if (POS.NOUN == p || POS.VERB == p) { if (needHelp) { System.out.println( "Recursively display hypernym (superordinate) tree for the search\n" + "string.\n" + "\n" + "Hypernym is the generic term used to designate a whole class of\n" + "specific instances. Y is a hypernym of X if X is a (kind of) Y.\n" + "\n" + "Hypernym synsets are preceded by \"=>\", and are indented from\n" + "the left according to their level in the hierarchy."); } tracePointers(iw, PointerType.HYPERNYM, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } } //syns if (arg.startsWith("-smem") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all holonyms of the search string.\n" + "\n" + "A holonym is the name of the whole of which the 'meronym' names a part.\n" + "Y is a holonym of X if X is a part of Y.\n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nMember Holonyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.MEMBER_HOLONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //smem if (arg.startsWith("-ssub") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all holonyms of the search string.\n" + "\n" + "A holonym is the name of the whole of which the 'meronym' names a part.\n" + "Y is a holonym of X if X is a part of Y.\n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nSubstance Holonyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.SUBSTANCE_HOLONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //ssub if (arg.startsWith("-sprt") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all holonyms of the search string.\n" + "\n" + "A holonym is the name of the whole of which the 'meronym' names a part.\n" + "Y is a holonym of X if X is a part of Y.\n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nPart Holonyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.PART_HOLONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //sprt if (arg.startsWith("-memb") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all meronyms of the search string. \n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y.\n" + "\n" + "A holonym is the name of the whole of which the meronym names a part.\n" + "Y is a holonym of X if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nMember Meronyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.MEMBER_MERONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //memb if (arg.startsWith("-subs") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all meronyms of the search string. \n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y.\n" + "\n" + "A holonym is the name of the whole of which the meronym names a part.\n" + "Y is a holonym of X if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nSubstance Meronyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.SUBSTANCE_MERONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //subs if (arg.startsWith("-part") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all meronyms of the search string. \n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y.\n" + "\n" + "A holonym is the name of the whole of which the meronym names a part.\n" + "Y is a holonym of X if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nPart Meronyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.PART_MERONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //part if (arg.startsWith("-mero") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all meronyms of the search string. \n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y.\n" + "\n" + "A holonym is the name of the whole of which the meronym names a part.\n" + "Y is a holonym of X if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nMeronyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.MEMBER_MERONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.SUBSTANCE_MERONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.PART_MERONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //mero if (arg.startsWith("-holo") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all holonyms of the search string.\n" + "\n" + "A holonym is the name of the whole of which the 'meronym' names a part.\n" + "Y is a holonym of X if X is a part of Y.\n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nHolonyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.MEMBER_HOLONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.SUBSTANCE_HOLONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.PART_HOLONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //holo if (arg.startsWith("-caus") && 6 == arg.length()) { if (needHelp) { System.out.println("Recursively display CAUSE TO relations of the search string.\n" + "\n" + "The action represented by the verb X causes the action represented by\n" + "the verb Y.\n" + "\n" + "CAUSE TO synsets are preceded by \"=>\", and are indented from the left\n" + "according to their level in the hierarchy."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\n'Cause to' of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.CAUSE, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //caus if (arg.startsWith("-pert") && 6 == arg.length()) { POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nPertainyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.PERTAINYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //pert if (arg.startsWith("-attr") && 6 == arg.length()) { POS p = POS.getPOSForKey(arg.substring(5)); if (needHelp) { if (POS.NOUN == p) { System.out .println("Display adjectives for which search string is an attribute."); } if (POS.ADJECTIVE == p) { System.out.println("Display nouns that are attributes of search string."); } } IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nAttributes of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.ATTRIBUTE, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //attr if (arg.startsWith("-deri") && 6 == arg.length()) { if (needHelp) { System.out.println( "Display derived forms - nouns and verbs that are related morphologically.\n" + "Each related synset is preceeded by its part of speech. Each word in the\n" + "synset is followed by its sense number."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nDerived forms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.NOMINALIZATION, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //deri if (arg.startsWith("-domn") && 6 == arg.length()) { if (needHelp) { System.out.println("Display domain to which this synset belongs."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nDomain of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.CATEGORY, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.USAGE, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.REGION, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //domn if (arg.startsWith("-domt") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all synsets belonging to the domain."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nDomain of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.CATEGORY_MEMBER, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.USAGE_MEMBER, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.REGION_MEMBER, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //domt if (arg.startsWith("-faml") && 6 == arg.length()) { if (needHelp) { System.out.println( "Display familiarity and polysemy information for the search string.\n" + "The polysemy count is the number of senses in WordNet."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { String[] freqs = { "extremely rare", "very rare", "rare", "uncommon", "common", "familiar", "very familiar", "extremely familiar" }; String[] pos = { "a noun", "a verb", "an adjective", "an adverb" }; int cnt = iw.getSenses().size(); int familiar = 0; if (cnt == 0) { familiar = 0; } if (cnt == 1) { familiar = 1; } if (cnt == 2) { familiar = 2; } if (cnt >= 3 && cnt <= 4) { familiar = 3; } if (cnt >= 5 && cnt <= 8) { familiar = 4; } if (cnt >= 9 && cnt <= 16) { familiar = 5; } if (cnt >= 17 && cnt <= 32) { familiar = 6; } if (cnt > 32) { familiar = 7; } System.out.println("\n" + iw.getLemma() + " used as " + pos[p.getId() - 1] + " is " + freqs[familiar] + " (polysemy count = " + cnt + ")"); } } //faml if (arg.startsWith("-fram") && 6 == arg.length()) { if (needHelp) { System.out.println( "Display applicable verb sentence frames for the search string.\n" + "\n" + "A frame is a sentence template illustrating the usage of a verb.\n" + "\n" + "Verb sentence frames are preceded with the string \"*>\" if a sentence\n" + "frame is acceptable for all of the words in the synset, and with \"=>\"\n" + "if a sentence frame is acceptable for the search string only."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nVerb frames of " + p.getLabel() + " " + iw.getLemma()); for (int i = 0; i < iw.getSenses().size(); i++) { Synset synset = iw.getSenses().get(i); for (String vf : synset.getVerbFrames()) { System.out.println("\t*> " + vf); } for (Word word : synset.getWords()) { if (iw.getLemma().equalsIgnoreCase(word.getLemma())) { if (word instanceof Verb) { Verb verb = (Verb) word; for (String vf : verb.getVerbFrames()) { System.out.println("\t=> " + vf); } } } } } } } //fram if (arg.startsWith("-hmer") && 6 == arg.length()) { if (needHelp) { System.out.println( "Display meronyms for search string tree. This is a recursive search\n" + "the prints all the meronyms of the search string and all of its\n" + "hypernyms. \n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nMeronyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.MEMBER_MERONYM, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.SUBSTANCE_MERONYM, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.PART_MERONYM, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //hmer if (arg.startsWith("-hhol") && 6 == arg.length()) { if (needHelp) { System.out.println( "\"Display holonyms for search string tree. This is a recursive search\n" + "that prints all the holonyms of the search string and all of the\n" + "holonym's holonyms.\n" + "\n" + "A holonym is the name of the whole of which the meronym names a part.\n" + "Y is a holonym of X if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nHolonyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.MEMBER_HOLONYM, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.SUBSTANCE_HOLONYM, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.PART_HOLONYM, PointerUtils.INFINITY, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //hhol if (arg.startsWith("-mero") && 6 == arg.length()) { if (needHelp) { System.out.println("Display all meronyms of the search string. \n" + "\n" + "A meronym is the name of a constituent part, the substance of, or a\n" + "member of something. X is a meronym of Y if X is a part of Y.\n" + "\n" + "A holonym is the name of the whole of which the meronym names a part.\n" + "Y is a holonym of X if X is a part of Y."); } POS p = POS.getPOSForKey(arg.substring(5)); IndexWord iw = d.lookupIndexWord(p, key); if (null != iw) { System.out.println("\nMeronyms of " + p.getLabel() + " " + iw.getLemma()); tracePointers(iw, PointerType.MEMBER_MERONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.SUBSTANCE_MERONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); tracePointers(iw, PointerType.PART_MERONYM, 1, needSense, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } //mero if (arg.startsWith("-grep") && 6 == arg.length()) { if (needHelp) { System.out .println("Print all strings in the database containing the search string\n" + "as an individual word, or as the first or last string in a word or\n" + "collocation."); } POS p = POS.getPOSForKey(arg.substring(5)); System.out.println("\nGrep of " + p.getLabel() + " " + key); Iterator<IndexWord> ii = d.getIndexWordIterator(p, key); while (ii.hasNext()) { System.out.println(ii.next().getLemma()); } } //grep if ("-over".equals(arg)) { for (POS pos : POS.getAllPOS()) { if (null != d.getMorphologicalProcessor()) { IndexWord iw = d.getIndexWord(pos, key); //for plurals like species, glasses if (null != iw && key.equals(iw.getLemma())) { printOverview(pos, iw, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } List<String> forms = d.getMorphologicalProcessor().lookupAllBaseForms(pos, key); if (null != forms) { for (String form : forms) { if (!form.equals(key)) { iw = d.getIndexWord(pos, form); if (null != iw) { printOverview(pos, iw, needGloss, needLex, needOffset, needSenseNum, needSenseKeys); } } } } } } } //over } } } } }
From source file:com.yahoo.labs.yamall.local.Yamall.java
public static void main(String[] args) { String[] remainingArgs = null; String inputFile = null;//from ww w . ja va 2s. co m String predsFile = null; String saveModelFile = null; String initialModelFile = null; String lossName = null; String parserName = null; String linkName = null; String invertHashName = null; double learningRate = 1; String minPredictionString = null; String maxPredictionString = null; String fmNumberFactorsString = null; int bitsHash; int numberPasses; int holdoutPeriod = 10; boolean testOnly = false; boolean exponentialProgress; double progressInterval; options.addOption("h", "help", false, "displays this help"); options.addOption("t", false, "ignore label information and just test"); options.addOption(Option.builder().hasArg(false).required(false).longOpt("binary") .desc("reports loss as binary classification with -1,1 labels").build()); options.addOption( Option.builder().hasArg(false).required(false).longOpt("solo").desc("uses SOLO optimizer").build()); options.addOption(Option.builder().hasArg(false).required(false).longOpt("pcsolo") .desc("uses Per Coordinate SOLO optimizer").build()); options.addOption(Option.builder().hasArg(false).required(false).longOpt("pistol") .desc("uses PiSTOL optimizer").build()); options.addOption(Option.builder().hasArg(false).required(false).longOpt("kt") .desc("(EXPERIMENTAL) uses KT optimizer").build()); options.addOption(Option.builder().hasArg(false).required(false).longOpt("pckt") .desc("(EXPERIMENTAL) uses Per Coordinate KT optimizer").build()); options.addOption(Option.builder().hasArg(false).required(false).longOpt("pccocob") .desc("(EXPERIMENTAL) uses Per Coordinate COCOB optimizer").build()); options.addOption(Option.builder().hasArg(false).required(false).longOpt("cocob") .desc("(EXPERIMENTAL) uses COCOB optimizer").build()); options.addOption( Option.builder().hasArg(false).required(false).longOpt("fm").desc("Factorization Machine").build()); options.addOption(Option.builder("f").hasArg(true).required(false).desc("final regressor to save") .type(String.class).longOpt("final_regressor").build()); options.addOption(Option.builder("p").hasArg(true).required(false).desc("file to output predictions to") .longOpt("predictions").type(String.class).build()); options.addOption( Option.builder("i").hasArg(true).required(false).desc("initial regressor(s) to load into memory") .longOpt("initial_regressor").type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false).desc( "specify the loss function to be used. Currently available ones are: absolute, squared (default), hinge, logistic") .longOpt("loss_function").type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false).desc( "specify the link function used in the output of the predictions. Currently available ones are: identity (default), logistic") .longOpt("link").type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false) .desc("output human-readable final regressor with feature names").longOpt("invert_hash") .type(String.class).build()); options.addOption( Option.builder("l").hasArg(true).required(false).desc("set (initial) learning Rate, default = 1.0") .longOpt("learning_rate").type(String.class).build()); options.addOption(Option.builder("b").hasArg(true).required(false) .desc("number of bits in the feature table, default = 18").longOpt("bit_precision") .type(String.class).build()); options.addOption(Option.builder("P").hasArg(true).required(false) .desc("progress update frequency, integer: additive; float: multiplicative, default = 2.0") .longOpt("progress").type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false) .desc("smallest prediction to output, before the link function, default = -50") .longOpt("min_prediction").type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false) .desc("smallest prediction to output, before the link function, default = 50") .longOpt("max_prediction").type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false) .desc("ignore namespaces beginning with the characters in <arg>").longOpt("ignore") .type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false).desc("number of training passes") .longOpt("passes").type(String.class).build()); options.addOption( Option.builder().hasArg(true).required(false).desc("holdout period for test only, default = 10") .longOpt("holdout_period").type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false) .desc("number of factors for Factorization Machines default = 8").longOpt("fmNumberFactors") .type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false) .desc("specify the parser to use. Currently available ones are: vw (default), libsvm, tsv") .longOpt("parser").type(String.class).build()); options.addOption(Option.builder().hasArg(true).required(false).desc("schema file for the TSV input") .longOpt("schema").type(String.class).build()); CommandLineParser parser = new DefaultParser(); CommandLine cmd = null; try { cmd = parser.parse(options, args); } catch (ParseException e) { System.out.println("Unrecognized option"); help(); } if (cmd.hasOption("h")) help(); if (cmd.hasOption("t")) testOnly = true; if (cmd.hasOption("binary")) { binary = true; System.out.println("Reporting binary loss"); } initialModelFile = cmd.getOptionValue("i"); predsFile = cmd.getOptionValue("p"); lossName = cmd.getOptionValue("loss_function", "squared"); linkName = cmd.getOptionValue("link", "identity"); saveModelFile = cmd.getOptionValue("f"); learningRate = Double.parseDouble(cmd.getOptionValue("l", "1.0")); bitsHash = Integer.parseInt(cmd.getOptionValue("b", "18")); invertHashName = cmd.getOptionValue("invert_hash"); minPredictionString = cmd.getOptionValue("min_prediction", "-50"); maxPredictionString = cmd.getOptionValue("max_prediction", "50"); fmNumberFactorsString = cmd.getOptionValue("fmNumberFactors", "8"); parserName = cmd.getOptionValue("parser", "vw"); numberPasses = Integer.parseInt(cmd.getOptionValue("passes", "1")); System.out.println("Number of passes = " + numberPasses); if (numberPasses > 1) { holdoutPeriod = Integer.parseInt(cmd.getOptionValue("holdout_period", "10")); System.out.println("Holdout period = " + holdoutPeriod); } remainingArgs = cmd.getArgs(); if (remainingArgs.length == 1) inputFile = remainingArgs[0]; InstanceParser instanceParser = null; if (parserName.equals("vw")) instanceParser = new VWParser(bitsHash, cmd.getOptionValue("ignore"), (invertHashName != null)); else if (parserName.equals("libsvm")) instanceParser = new LIBSVMParser(bitsHash, (invertHashName != null)); else if (parserName.equals("tsv")) { String schema = cmd.getOptionValue("schema"); if (schema == null) { System.out.println("TSV parser requires a schema file."); System.exit(0); } else { String spec = null; try { spec = new String(Files.readAllBytes(Paths.get(schema))); } catch (IOException e) { System.out.println("Error reading the TSV schema file."); e.printStackTrace(); System.exit(0); } instanceParser = new TSVParser(bitsHash, cmd.getOptionValue("ignore"), (invertHashName != null), spec); } } else { System.out.println("Unknown parser."); System.exit(0); } System.out.println("Num weight bits = " + bitsHash); // setup progress String progress = cmd.getOptionValue("P", "2.0"); if (progress.indexOf('.') >= 0) { exponentialProgress = true; progressInterval = (double) Double.parseDouble(progress); } else { exponentialProgress = false; progressInterval = (double) Integer.parseInt(progress); } // min and max predictions minPrediction = (double) Double.parseDouble(minPredictionString); maxPrediction = (double) Double.parseDouble(maxPredictionString); // number of factors for Factorization Machines fmNumberFactors = (int) Integer.parseInt(fmNumberFactorsString); // configure the learner Loss lossFnc = null; LinkFunction link = null; if (initialModelFile == null) { if (cmd.hasOption("kt")) { learner = new KT(bitsHash); } else if (cmd.hasOption("pckt")) { learner = new PerCoordinateKT(bitsHash); } else if (cmd.hasOption("pcsolo")) { learner = new PerCoordinateSOLO(bitsHash); } else if (cmd.hasOption("solo")) { learner = new SOLO(bitsHash); } else if (cmd.hasOption("pccocob")) { learner = new PerCoordinateCOCOB(bitsHash); } else if (cmd.hasOption("cocob")) { learner = new COCOB(bitsHash); } else if (cmd.hasOption("pistol")) { learner = new PerCoordinatePiSTOL(bitsHash); } else if (cmd.hasOption("fm")) { learner = new SGD_FM(bitsHash, fmNumberFactors); } else learner = new SGD_VW(bitsHash); } else { learner = IOLearner.loadLearner(initialModelFile); } // setup link function if (linkName.equals("identity")) { link = new IdentityLinkFunction(); } else if (linkName.equals("logistic")) { link = new LogisticLinkFunction(); } else { System.out.println("Unknown link function."); System.exit(0); } // setup loss function if (lossName.equals("squared")) { lossFnc = new SquareLoss(); } else if (lossName.equals("hinge")) { lossFnc = new HingeLoss(); } else if (lossName.equals("logistic")) { lossFnc = new LogisticLoss(); } else if (lossName.equals("absolute")) { lossFnc = new AbsLoss(); } else { System.out.println("Unknown loss function."); System.exit(0); } learner.setLoss(lossFnc); learner.setLearningRate(learningRate); // maximum range predictions System.out.println("Max prediction = " + maxPrediction + ", Min Prediction = " + minPrediction); // print information about the learner System.out.println(learner.toString()); // print information about the link function System.out.println(link.toString()); // print information about the parser System.out.println(instanceParser.toString()); // print information about ignored namespaces System.out.println("Ignored namespaces = " + cmd.getOptionValue("ignore", "")); long start = System.nanoTime(); FileInputStream fstream; try { BufferedReader br = null; if (inputFile != null) { fstream = new FileInputStream(inputFile); System.out.println("Reading datafile = " + inputFile); br = new BufferedReader(new InputStreamReader(fstream)); } else { System.out.println("Reading from console"); br = new BufferedReader(new InputStreamReader(System.in)); } File fout = null; FileOutputStream fos = null; BufferedWriter bw = null; if (predsFile != null) { fout = new File(predsFile); fos = new FileOutputStream(fout); bw = new BufferedWriter(new OutputStreamWriter(fos)); } try { System.out.println("average example current current current"); System.out.println("loss counter label predict features"); int iter = 0; double cumLoss = 0; double weightedSampleSum = 0; double sPlus = 0; double sMinus = 0; Instance sample = null; boolean justPrinted = false; int pass = 0; ObjectOutputStream ooutTr = null; ObjectOutputStream ooutHO = null; ObjectInputStream oinTr = null; double pred = 0; int limit = 1; double hError = Double.MAX_VALUE; double lastHError = Double.MAX_VALUE; int numTestSample = 0; int numTrainingSample = 0; int idx = 0; if (numberPasses > 1) { ooutTr = new ObjectOutputStream(new FileOutputStream("cache_training.bin")); ooutHO = new ObjectOutputStream(new FileOutputStream("cache_holdout.bin")); oinTr = new ObjectInputStream(new FileInputStream("cache_training.bin")); } do { while (true) { double score; if (pass > 0 && numberPasses > 1) { Instance tmp = (Instance) oinTr.readObject(); if (tmp != null) sample = tmp; else break; } else { String strLine = br.readLine(); if (strLine != null) sample = instanceParser.parse(strLine); else break; } justPrinted = false; idx++; if (numberPasses > 1 && pass == 0 && idx % holdoutPeriod == 0) { // store the current sample for the holdout set ooutHO.writeObject(sample); ooutHO.reset(); numTestSample++; } else { if (numberPasses > 1 && pass == 0) { ooutTr.writeObject(sample); ooutTr.reset(); numTrainingSample++; } iter++; if (testOnly) { // predict the sample score = learner.predict(sample); } else { // predict the sample and update the classifier using the sample score = learner.update(sample); } score = Math.min(Math.max(score, minPrediction), maxPrediction); pred = link.apply(score); if (!binary) cumLoss += learner.getLoss().lossValue(score, sample.getLabel()) * sample.getWeight(); else if (Math.signum(score) != sample.getLabel()) cumLoss += sample.getWeight(); weightedSampleSum += sample.getWeight(); if (sample.getLabel() > 0) sPlus = sPlus + sample.getWeight(); else sMinus = sMinus + sample.getWeight(); // output predictions to file if (predsFile != null) { bw.write(String.format("%.6f %s", pred, sample.getTag())); bw.newLine(); } // print statistics to screen if (iter == limit) { justPrinted = true; System.out.printf("%.6f %12d % .4f % .4f %d\n", cumLoss / weightedSampleSum, iter, sample.getLabel(), pred, sample.getVector().size()); if (exponentialProgress) limit *= progressInterval; else limit += progressInterval; } } } if (numberPasses > 1) { if (pass == 0) { // finished first pass of many // write a null at the end of the files ooutTr.writeObject(null); ooutHO.writeObject(null); ooutTr.flush(); ooutHO.flush(); ooutTr.close(); ooutHO.close(); System.out.println("finished first epoch"); System.out.println(numTrainingSample + " training samples"); System.out.println(numTestSample + " holdout samples saved"); } lastHError = hError; hError = evalHoldoutError(); } if (numberPasses > 1) { System.out.printf("Weighted loss on holdout on epoch %d = %.6f\n", pass + 1, hError); oinTr.close(); oinTr = new ObjectInputStream(new FileInputStream("cache_training.bin")); if (hError > lastHError) { System.out.println("Early stopping"); break; } } pass++; } while (pass < numberPasses); if (justPrinted == false) { System.out.printf("%.6f %12d % .4f % .4f %d\n", cumLoss / weightedSampleSum, iter, sample.getLabel(), pred, sample.getVector().size()); } System.out.println("finished run"); System.out.println(String.format("average loss best constant predictor: %.6f", lossFnc.lossConstantBinaryLabels(sPlus, sMinus))); if (saveModelFile != null) IOLearner.saveLearner(learner, saveModelFile); if (invertHashName != null) IOLearner.saveInvertHash(learner.getWeights(), instanceParser.getInvertHashMap(), invertHashName); } catch (IOException e) { // TODO Auto-generated catch block e.printStackTrace(); } catch (ClassNotFoundException e) { // TODO Auto-generated catch block e.printStackTrace(); } // close the input stream try { br.close(); } catch (IOException e) { // TODO Auto-generated catch block e.printStackTrace(); } // close the output stream if (predsFile != null) { try { bw.close(); } catch (IOException e) { // TODO Auto-generated catch block e.printStackTrace(); } } long millis = System.nanoTime() - start; System.out.printf("Elapsed time: %d min, %d sec\n", TimeUnit.NANOSECONDS.toMinutes(millis), TimeUnit.NANOSECONDS.toSeconds(millis) - 60 * TimeUnit.NANOSECONDS.toMinutes(millis)); } catch ( FileNotFoundException e) { System.out.println("Error opening the input file"); e.printStackTrace(); } }
From source file:com.pari.nm.utils.backup.BackupRestore.java
/** * @param args//from w w w.ja v a 2 s. co m */ public static void main(String[] args) { com.maverick.ssh.LicenseManager.addLicense("----BEGIN 3SP LICENSE----\r\n" + "Product : J2SSH Maverick\r\n" + "Licensee: Pari Networks Inc.\r\n" + "Comments: Sreenivas Devalla\r\n" + "Type : Foundation License\r\n" + "Created : 20-Jun-2007\r\n" + "\r\n" + "3787201A027FCA5BA600F3CF9CCEF4C85068187D70F94ABC\r\n" + "E7D7280AAFB06CE499DC968A4CB25795475D5B79FDDD6CB4\r\n" + "7971A60E947E84A4DADFAB2F89E2F52470182ED2EF429A2F\r\n" + "2EC6D8B49CAF167605A7F56C4EB736ECA7150819FCF04DC6\r\n" + "01B1404EA9BC83BEAA4AB2F4FC7AB344BEC08CF9DDDAAA34\r\n" + "EC80C1C14FA8BB1A8B47E86D393FAECD3C0E7C450E0D1FE3\r\n" + "----END 3SP LICENSE----\r\n"); String mode = null; BufferedReader br = null; if (args.length < 9) { System.err.println("BackUpDatabase: Invalid Syntax."); System.err.println( "Usage - java BackUpDatabase <ftpserver> <ftpuser> <ftppassword> <ftpdir> <ftpfile> <localdir> <backup | recovery> "); System.exit(-1); } try { mode = args[8]; System.out.println("Request received with mode :" + mode + "\n"); // BackupRestore tbk = BackupRestore.getInstance(); BackupRestore tbk = new BackupRestore(); if ((mode != null) && (mode.length() > 0) && mode.equalsIgnoreCase("recovery")) { File restoreDir = new File(args[7], args[6].substring(0, args[6].length() - 4)); System.out.println("Restore Directory :" + restoreDir + "\n"); if (!restoreDir.exists()) { try { FTPServerType serverType = FTPServerType.valueOf(FTPServerType.class, args[0]); System.out.println("Fetching the backup File :" + args[6] + "\n"); System.out.println("Please wait, it may take sometime....." + "\n"); if (tbk.fetchAndExtractBackupFile(serverType, args[1], Integer.parseInt(args[2]), args[3], args[4], args[5], args[6], args[7]) == null) { System.err.println("Error : Failed to fetch the backup File.\n"); System.exit(-1); } System.out.println("Successfully fetched the backup File :" + args[6] + "\n"); } catch (Exception e) { System.out.println( "Error : Exception while fetching the backup file.Failed to restore the backup File.\n"); e.printStackTrace(); System.exit(-1); } } try { Thread.sleep(10000); } catch (Exception ee) { ee.printStackTrace(); } System.out.println("Starting recovery ...\n"); if (!File.separator.equals("\\")) { System.out.println("Stopping the Pari Server process.\n"); Process p = Runtime.getRuntime().exec("killall -9 pari_server"); MyReader min = new MyReader(p.getInputStream()); MyReader merr = new MyReader(p.getErrorStream()); try { min.join(20000); } catch (Exception ee) { } try { merr.join(20000); } catch (Exception ex) { } } if (!File.separator.equals("\\")) { System.out.println("Stopping the Pari Server process.\n"); // Process p = Runtime.getRuntime().exec("killall -9 pari_server"); Process p = Runtime.getRuntime().exec("/etc/init.d/dash stop"); MyReader min = new MyReader(p.getInputStream()); MyReader merr = new MyReader(p.getErrorStream()); try { min.join(20000); } catch (Exception ee) { } try { merr.join(20000); } catch (Exception ex) { } } System.out.println("Start recovering the backup file.\n"); if (tbk.doRecovery(args[0], args[1], args[2], args[3], args[4], args[5], args[6], args[7])) { System.out.println("Done recovering...\n"); validateCSPCInstanace(); } else { System.out.println("Failed to recover the backup File...\n"); } try { Process p = null; String cmd = ""; if (File.separator == "\\") { cmd = "cmd /k start_server.cmd > pari.out 2>&1"; } else { cmd = "/etc/init.d/dash start"; } System.err.println(cmd); Runtime.getRuntime().exec(cmd); Boolean flag = false; int count = 0; String[] nccmStatusCheckCmd = { "/bin/sh", "-c", "netstat -an | grep 42605 | grep LISTEN | wc -l" }; do { count++; Thread.sleep(60000); // The command output will be 1 if NCCM server started and Listening on port 42605 otherwise it // will return 0 p = Runtime.getRuntime().exec(nccmStatusCheckCmd); int ex = -1; try { ex = p.waitFor(); } catch (InterruptedException e) { System.out.println("Normal execution, exception: " + e); } System.out.println("Normal execution, exit value: " + ex); br = new BufferedReader(new InputStreamReader(p.getInputStream())); String thisLine = null; while ((thisLine = br.readLine()) != null) { System.out.println("Command Execution Result:" + thisLine); if (thisLine.equals("1")) { flag = true; break; } } System.out.println("Count - " + count); BufferedReader error = new BufferedReader(new InputStreamReader(p.getErrorStream())); while ((thisLine = error.readLine()) != null) { System.out.println(thisLine); } } while ((!flag) && count < 30); if (flag) { // System.out.println("NCCM Server came to listening state: after " + count + " mins"); // Runtime.getRuntime().exec("sh $DASH_HOME/webui/tomcat/bin/shutdown.sh"); Thread.sleep(60000); System.out.println("NCCM Server came to listening state: after " + count + " mins"); // Runtime.getRuntime().exec("sh $DASH_HOME/webui/tomcat/bin/startup.sh"); } else { System.out.println("NCCM Server didn't come to listening state: last " + count + " mins"); System.out.println("Please verify NCCM Server and start tomcat server manually."); } System.exit(1); } catch (Exception ee) { ee.printStackTrace(); } } else if ((mode != null) && (mode.length() > 0) && mode.equalsIgnoreCase("ftplist")) { PariFTP pftp = new PariFTP("10.100.1.20", "guest", "guest", "/"); String[] list = pftp.getRemoteListing(); System.out.println("List of Files\n"); for (int i = 0; (list != null) && (i < list.length); i++) { System.out.println(list[i] + "\n"); } } else { System.out.println("Mode \t" + mode + "\t not supported\n"); } System.exit(-1); } catch (Exception e) { e.printStackTrace(); } finally { try { if (br != null) { br.close(); } } catch (Exception ex) { ex.printStackTrace(); } } }
From source file:Main.java
public static void close(BufferedReader reader) { try {/* w w w . j a va 2 s. c o m*/ reader.close(); } catch (IOException e) { e.printStackTrace(); } }
From source file:Main.java
/** * Close a InputStream passed in./*from w w w . j av a2 s.c o m*/ * * @param stream - InputStream to be closed. */ public static void closeBufferedReader(BufferedReader stream, String tag) { if (stream != null) { try { stream.close(); } catch (IOException e) { Log.e(tag, "Exception occured when closing BufferedReader." + e); } } }
From source file:JarRead.java
private static void process(InputStream input) throws IOException { InputStreamReader isr = new InputStreamReader(input); BufferedReader reader = new BufferedReader(isr); String line;/*from w w w . j a va2 s . com*/ while ((line = reader.readLine()) != null) { System.out.println(line); } reader.close(); }
From source file:Main.java
private static void readFile(String fileName) throws Exception { File file = new File(fileName); FileReader reader = new FileReader(file); BufferedReader in = new BufferedReader(reader); String string;// ww w .jav a 2 s. c o m while ((string = in.readLine()) != null) { System.out.println(string); } in.close(); }
From source file:Main.java
public static String getEncoding(String f) { String encoding = "UTF-8"; File file = new File(f); try {//from www . j a va 2s.c o m BufferedReader reader = new BufferedReader(new FileReader(file)); String xml = reader.readLine(); reader.close(); xml = xml.toLowerCase(); int pos = xml.indexOf("encoding"); if (pos < 0) { return encoding; } xml = xml.substring(pos + "encoding".length()); pos = xml.indexOf("\""); xml = xml.substring(pos + 1); pos = xml.indexOf("\""); xml = xml.substring(0, pos).trim(); return xml.toUpperCase(); } catch (Exception ex) { ex.printStackTrace(); } return encoding; }