Example usage for com.vaadin.ui Window setIcon

List of usage examples for com.vaadin.ui Window setIcon

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Introduction

In this page you can find the example usage for com.vaadin.ui Window setIcon.

Prototype

@Override
public void setIcon(Resource icon)

Source Link

Document

Sets the component's icon.

Usage

From source file:de.uni_tuebingen.qbic.qbicmainportlet.BiologicalSamplesComponent.java

License:Open Source License

/**
 * //from   w ww  . ja v  a 2  s.  c  om
 * @param id
 */
public void updateUI(String id) {

    currentID = id;
    sampleBioGrid = new Grid();
    sampleEntityGrid = new Grid();

    sampleEntityGrid.addSelectionListener(new SelectionListener() {

        @Override
        public void select(SelectionEvent event) {
            BeanItem<BiologicalEntitySampleBean> selectedBean = samplesEntity
                    .getItem(sampleEntityGrid.getSelectedRow());

            if (selectedBean == null) {
                TextField filterField = (TextField) sampleBioGrid.getHeaderRow(1).getCell("biologicalEntity")
                        .getComponent();
                filterField.setValue("");
            } else {
                TextField filterField = (TextField) sampleBioGrid.getHeaderRow(1).getCell("biologicalEntity")
                        .getComponent();
                filterField.setValue(selectedBean.getBean().getCode());
                // samplesBio.addContainerFilter("biologicalEntity",
                // selectedBean.getBean().getSecondaryName(), false, false);
            }
        }

    });

    if (id == null)
        return;

    BeanItemContainer<BiologicalSampleBean> samplesBioContainer = new BeanItemContainer<BiologicalSampleBean>(
            BiologicalSampleBean.class);
    BeanItemContainer<BiologicalEntitySampleBean> samplesEntityContainer = new BeanItemContainer<BiologicalEntitySampleBean>(
            BiologicalEntitySampleBean.class);

    List<Sample> allSamples = datahandler.getOpenBisClient()
            .getSamplesWithParentsAndChildrenOfProjectBySearchService(id);

    List<VocabularyTerm> terms = null;
    Map<String, String> termsMap = new HashMap<String, String>();

    for (Sample sample : allSamples) {

        if (sample.getSampleTypeCode().equals(sampleTypes.Q_BIOLOGICAL_ENTITY.toString())) {

            Map<String, String> sampleProperties = sample.getProperties();

            BiologicalEntitySampleBean newEntityBean = new BiologicalEntitySampleBean();
            newEntityBean.setCode(sample.getCode());
            newEntityBean.setId(sample.getIdentifier());
            newEntityBean.setType(sample.getSampleTypeCode());
            newEntityBean.setAdditionalInfo(sampleProperties.get("Q_ADDITIONAL_INFO"));
            newEntityBean.setExternalDB(sampleProperties.get("Q_EXTERNALDB_ID"));
            newEntityBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME"));

            String organismID = sampleProperties.get("Q_NCBI_ORGANISM");
            newEntityBean.setOrganism(organismID);

            if (terms != null) {
                if (termsMap.containsKey(organismID)) {
                    newEntityBean.setOrganismName(termsMap.get(organismID));
                } else {
                    for (VocabularyTerm term : terms) {
                        if (term.getCode().equals(organismID)) {
                            newEntityBean.setOrganismName(term.getLabel());
                            break;
                        }
                    }
                }
            } else {
                for (Vocabulary vocab : datahandler.getOpenBisClient().getFacade().listVocabularies()) {
                    if (vocab.getCode().equals("Q_NCBI_TAXONOMY")) {
                        terms = vocab.getTerms();
                        for (VocabularyTerm term : vocab.getTerms()) {
                            if (term.getCode().equals(organismID)) {
                                newEntityBean.setOrganismName(term.getLabel());
                                termsMap.put(organismID, term.getLabel());
                                break;
                            }
                        }
                        break;
                    }
                }
            }

            newEntityBean.setProperties(sampleProperties);
            newEntityBean.setGender(sampleProperties.get("Q_GENDER"));
            samplesEntityContainer.addBean(newEntityBean);

            // for (Sample child : datahandler.getOpenBisClient().getChildrenSamples(sample)) {
            for (Sample realChild : sample.getChildren()) {
                if (realChild.getSampleTypeCode().equals(sampleTypes.Q_BIOLOGICAL_SAMPLE.toString())) {
                    // Sample realChild =
                    // datahandler.getOpenBisClient().getSampleByIdentifier(child.getIdentifier());

                    Map<String, String> sampleBioProperties = realChild.getProperties();

                    BiologicalSampleBean newBean = new BiologicalSampleBean();
                    newBean.setCode(realChild.getCode());
                    newBean.setId(realChild.getIdentifier());
                    newBean.setType(realChild.getSampleTypeCode());
                    newBean.setPrimaryTissue(sampleBioProperties.get("Q_PRIMARY_TISSUE"));
                    newBean.setTissueDetailed(sampleBioProperties.get("Q_TISSUE_DETAILED"));
                    newBean.setBiologicalEntity(sample.getCode());

                    newBean.setAdditionalInfo(sampleBioProperties.get("Q_ADDITIONAL_INFO"));
                    newBean.setExternalDB(sampleBioProperties.get("Q_EXTERNALDB_ID"));
                    newBean.setSecondaryName(sampleBioProperties.get("Q_SECONDARY_NAME"));
                    newBean.setProperties(sampleBioProperties);

                    samplesBioContainer.addBean(newBean);
                }
            }
        }
    }

    numberOfBioSamples = samplesBioContainer.size();
    numberOfEntitySamples = samplesEntityContainer.size();

    samplesBio = samplesBioContainer;
    samplesEntity = samplesEntityContainer;

    sampleEntityGrid.removeAllColumns();

    final GeneratedPropertyContainer gpcEntity = new GeneratedPropertyContainer(samplesEntity);
    gpcEntity.removeContainerProperty("id");
    gpcEntity.removeContainerProperty("type");
    gpcEntity.removeContainerProperty("organismName");
    gpcEntity.removeContainerProperty("organism");

    sampleEntityGrid.setContainerDataSource(gpcEntity);
    sampleEntityGrid.setColumnReorderingAllowed(true);

    gpcEntity.addGeneratedProperty("Organism", new PropertyValueGenerator<String>() {

        @Override
        public Class<String> getType() {
            return String.class;
        }

        @Override
        public String getValue(Item item, Object itemId, Object propertyId) {
            String ncbi = String.format(
                    "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&name=%s&lvl=0&srchmode=1&keep=1&unlock' target='_blank'>%s</a>",
                    item.getItemProperty("organism").getValue(),
                    item.getItemProperty("organismName").getValue());
            String link = String.format("<a href='%s", ncbi);

            return link;
        }
    });

    sampleEntityGrid.getColumn("Organism").setRenderer(new HtmlRenderer());

    final GeneratedPropertyContainer gpcBio = new GeneratedPropertyContainer(samplesBio);
    gpcBio.removeContainerProperty("id");
    gpcBio.removeContainerProperty("type");

    sampleBioGrid.setContainerDataSource(gpcBio);
    sampleBioGrid.setColumnReorderingAllowed(true);
    sampleBioGrid.setColumnOrder("secondaryName", "code");

    gpcEntity.addGeneratedProperty("edit", new PropertyValueGenerator<String>() {
        @Override
        public String getValue(Item item, Object itemId, Object propertyId) {
            return "Edit";
        }

        @Override
        public Class<String> getType() {
            return String.class;
        }
    });

    gpcBio.addGeneratedProperty("edit", new PropertyValueGenerator<String>() {
        @Override
        public String getValue(Item item, Object itemId, Object propertyId) {
            return "Edit";
        }

        @Override
        public Class<String> getType() {
            return String.class;
        }
    });

    sampleEntityGrid.addItemClickListener(new ItemClickListener() {

        @Override
        public void itemClick(ItemClickEvent event) {

            BeanItem selected = (BeanItem) samplesEntity.getItem(event.getItemId());
            BiologicalEntitySampleBean selectedExp = (BiologicalEntitySampleBean) selected.getBean();

            State state = (State) UI.getCurrent().getSession().getAttribute("state");
            ArrayList<String> message = new ArrayList<String>();
            message.add("clicked");
            message.add(selectedExp.getId());
            message.add("sample");
            state.notifyObservers(message);
        }
    });

    sampleEntityGrid.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() {

        @Override
        public void click(RendererClickEvent event) {
            BeanItem selected = (BeanItem) samplesEntity.getItem(event.getItemId());
            BiologicalEntitySampleBean selectedSample = (BiologicalEntitySampleBean) selected.getBean();

            Window subWindow = new Window("Edit Metadata");

            changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType());
            VerticalLayout subContent = new VerticalLayout();
            subContent.setMargin(true);
            subContent.addComponent(changeMetadata);
            subWindow.setContent(subContent);
            // Center it in the browser window
            subWindow.center();
            subWindow.setModal(true);
            subWindow.setIcon(FontAwesome.PENCIL);
            subWindow.setHeight("75%");

            subWindow.addCloseListener(new CloseListener() {
                /**
                 * 
                 */
                private static final long serialVersionUID = -1329152609834711109L;

                @Override
                public void windowClose(CloseEvent e) {
                    updateUI(currentID);
                }
            });

            QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent();
            ui.addWindow(subWindow);
        }
    }));
    sampleEntityGrid.getColumn("edit").setWidth(70);
    sampleEntityGrid.getColumn("edit").setHeaderCaption("");
    sampleEntityGrid.setColumnOrder("edit", "secondaryName", "Organism", "properties", "code", "additionalInfo",
            "gender", "externalDB");

    sampleBioGrid.addItemClickListener(new ItemClickListener() {

        @Override
        public void itemClick(ItemClickEvent event) {

            BeanItem selected = (BeanItem) samplesBio.getItem(event.getItemId());
            BiologicalSampleBean selectedExp = (BiologicalSampleBean) selected.getBean();

            State state = (State) UI.getCurrent().getSession().getAttribute("state");
            ArrayList<String> message = new ArrayList<String>();
            message.add("clicked");
            message.add(selectedExp.getId());
            message.add("sample");
            state.notifyObservers(message);
        }
    });

    sampleBioGrid.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() {

        @Override
        public void click(RendererClickEvent event) {
            BeanItem selected = (BeanItem) samplesBio.getItem(event.getItemId());

            try {
                BiologicalSampleBean selectedSample = (BiologicalSampleBean) selected.getBean();

                Window subWindow = new Window();

                changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType());
                VerticalLayout subContent = new VerticalLayout();
                subContent.setMargin(true);
                subContent.addComponent(changeMetadata);
                subWindow.setContent(subContent);
                // Center it in the browser window
                subWindow.center();
                subWindow.setModal(true);
                subWindow.setResizable(false);

                subWindow.addCloseListener(new CloseListener() {
                    /**
                    * 
                    */
                    private static final long serialVersionUID = -1329152609834711109L;

                    @Override
                    public void windowClose(CloseEvent e) {
                        updateUI(currentID);
                    }
                });

                QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent();
                ui.addWindow(subWindow);
            } catch (NullPointerException e) {
                System.err.println("NullPointerException while trying to set metadata: " + e.getMessage());

            }
        }
    }));

    sampleBioGrid.getColumn("edit").setWidth(70);
    sampleBioGrid.getColumn("edit").setHeaderCaption("");
    sampleBioGrid.setColumnOrder("edit", "secondaryName", "primaryTissue", "properties", "tissueDetailed",
            "code", "additionalInfo", "biologicalEntity", "externalDB");

    sampleBioGrid.getColumn("biologicalEntity").setHeaderCaption("Source");

    helpers.GridFunctions.addColumnFilters(sampleBioGrid, gpcBio);
    helpers.GridFunctions.addColumnFilters(sampleEntityGrid, gpcEntity);

    if (fileDownloaderSources != null)
        exportSources.removeExtension(fileDownloaderSources);
    StreamResource srSource = Utils.getTSVStream(Utils.containerToString(samplesEntityContainer),
            String.format("%s_%s_", id.substring(1).replace("/", "_"), "sample_sources"));
    fileDownloaderSources = new FileDownloader(srSource);
    fileDownloaderSources.extend(exportSources);

    if (fileDownloaderSamples != null)
        exportSamples.removeExtension(fileDownloaderSamples);
    StreamResource srSamples = Utils.getTSVStream(Utils.containerToString(samplesBioContainer),
            String.format("%s_%s_", id.substring(1).replace("/", "_"), "extracted_samples"));
    fileDownloaderSamples = new FileDownloader(srSamples);
    fileDownloaderSamples.extend(exportSamples);

    this.buildLayout();
}

From source file:de.uni_tuebingen.qbic.qbicmainportlet.ExperimentComponent.java

License:Open Source License

public void updateUI(ProjectBean currentBean) {
    projectBean = currentBean;/*from   w  ww  .  j  a  v a 2  s .  c o  m*/
    experiments.removeAllColumns();
    // experiments.setContainerDataSource(projectBean.getExperiments());

    // BeanItemContainer<ExperimentBean> experimentBeans =
    // loadMoreExperimentInformation(projectBean.getExperiments());
    // GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(experimentBeans);
    GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(projectBean.getExperiments());

    gpc.removeContainerProperty("containsData");
    gpc.removeContainerProperty("controlledVocabularies");
    gpc.removeContainerProperty("id");
    gpc.removeContainerProperty("lastChangedDataset");
    gpc.removeContainerProperty("lastChangedSample");
    gpc.removeContainerProperty("properties");
    gpc.removeContainerProperty("type");
    gpc.removeContainerProperty("samples");
    gpc.removeContainerProperty("status");
    gpc.removeContainerProperty("typeLabels");
    gpc.removeContainerProperty("registrationDate");

    experiments.addItemClickListener(new ItemClickListener() {

        /**
         * 
         */
        private static final long serialVersionUID = -43367719647620455L;

        @Override
        public void itemClick(ItemClickEvent event) {

            BeanItem selected = (BeanItem) projectBean.getExperiments().getItem(event.getItemId());
            ExperimentBean selectedExp = (ExperimentBean) selected.getBean();

            State state = (State) UI.getCurrent().getSession().getAttribute("state");
            ArrayList<String> message = new ArrayList<String>();
            message.add("clicked");
            message.add(selectedExp.getId());
            message.add("experiment");
            state.notifyObservers(message);
        }
    });

    gpc.addGeneratedProperty("edit", new PropertyValueGenerator<String>() {

        /**
         * 
         */
        private static final long serialVersionUID = 7558511163500976236L;

        @Override
        public String getValue(Item item, Object itemId, Object propertyId) {
            return "Edit";
        }

        @Override
        public Class<String> getType() {
            return String.class;
        }
    });

    gpc.addGeneratedProperty("registrationDate", new PropertyValueGenerator<String>() {

        @Override
        public Class<String> getType() {
            return String.class;
        }

        @Override
        public String getValue(Item item, Object itemId, Object propertyId) {
            BeanItem selected = (BeanItem) projectBean.getExperiments().getItem(itemId);
            ExperimentBean expBean = (ExperimentBean) selected.getBean();
            Date date = expBean.getRegistrationDate();
            SimpleDateFormat sd = new SimpleDateFormat("yyyy-MM-dd hh:mm a");
            String dateString = sd.format(date);

            return dateString;
        }
    });

    experiments.setContainerDataSource(gpc);
    experiments.getColumn("prettyType").setHeaderCaption("Type");
    experiments.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() {

        @Override
        public void click(RendererClickEvent event) {
            BeanItem selected = (BeanItem) projectBean.getExperiments().getItem(event.getItemId());
            ExperimentBean selectedSample = (ExperimentBean) selected.getBean();

            Window subWindow = new Window("Edit Metadata");

            changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType());
            VerticalLayout subContent = new VerticalLayout();
            subContent.setMargin(true);
            subContent.addComponent(changeMetadata);
            subWindow.setContent(subContent);
            // Center it in the browser window
            subWindow.center();
            subWindow.setModal(true);
            subWindow.setSizeUndefined();
            subWindow.setIcon(FontAwesome.PENCIL);
            subWindow.setHeight("75%");
            subWindow.setResizable(false);

            QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent();
            ui.addWindow(subWindow);
        }

    }));

    experiments.getColumn("edit").setWidth(70);
    experiments.setColumnOrder("edit", "prettyType");
    experiments.getColumn("edit").setHeaderCaption("");

    // experiments.setHeightMode(HeightMode.ROW);
    // experiments.setHeightByRows(gpc.size());

    if (fileDownloader != null)
        this.export.removeExtension(fileDownloader);
    StreamResource sr = Utils.getTSVStream(Utils.containerToString(projectBean.getExperiments()),
            String.format("%s_%s_", projectBean.getId().substring(1).replace("/", "_"), "experimental_steps"));
    fileDownloader = new FileDownloader(sr);
    fileDownloader.extend(export);
}

From source file:de.uni_tuebingen.qbic.qbicmainportlet.LevelComponent.java

License:Open Source License

public void updateUI(String type, String id, String filterFor) {

    sampleGrid = new Grid();
    typeString = type;/*  w ww.java  2  s .co m*/
    idString = id;
    filterString = filterFor;

    if (id == null)
        return;
    try {
        HierarchicalContainer datasetContainer = new HierarchicalContainer();
        datasetContainer.addContainerProperty("Select", CheckBox.class, null);
        datasetContainer.addContainerProperty("Project", String.class, null);
        datasetContainer.addContainerProperty("Sample", String.class, null);
        datasetContainer.addContainerProperty("Description", String.class, null);
        // datasetContainer.addContainerProperty("Sample Type", String.class, null);
        datasetContainer.addContainerProperty("File Name", String.class, null);
        datasetContainer.addContainerProperty("File Type", String.class, null);
        datasetContainer.addContainerProperty("Dataset Type", String.class, null);
        datasetContainer.addContainerProperty("Registration Date", String.class, null);
        datasetContainer.addContainerProperty("Validated", Boolean.class, null);
        datasetContainer.addContainerProperty("File Size", String.class, null);
        datasetContainer.addContainerProperty("file_size_bytes", Long.class, null);
        datasetContainer.addContainerProperty("dl_link", String.class, null);
        datasetContainer.addContainerProperty("isDirectory", Boolean.class, null);
        datasetContainer.addContainerProperty("CODE", String.class, null);

        List<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> retrievedDatasetsAll = null;
        List<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> retrievedDatasets = new ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>();
        Map<String, ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>> datasetFilter = new HashMap<String, ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>>();

        // clear download queue for new view
        PortletSession portletSession = ((QbicmainportletUI) UI.getCurrent()).getPortletSession();
        portletSession.setAttribute("qbic_download",
                new HashMap<String, AbstractMap.SimpleEntry<String, Long>>(), PortletSession.APPLICATION_SCOPE);
        Map<String, Sample> checkedTestSamples = new HashMap<String, Sample>();

        switch (type) {
        case "project":
            String projectIdentifier = id;
            retrievedDatasetsAll = datahandler.getOpenBisClient()
                    .getDataSetsOfProjectByIdentifierWithSearchCriteria(projectIdentifier);

            for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet ds : retrievedDatasetsAll) {

                ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> values = datasetFilter
                        .get(ds.getSampleIdentifierOrNull());

                if (values == null) {
                    values = new ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>();
                    datasetFilter.put(ds.getSampleIdentifierOrNull(), values);
                }
                values.add(ds);
            }

            if (filterFor.equals("measured")) {
                BeanItemContainer<TestSampleBean> samplesContainer = new BeanItemContainer<TestSampleBean>(
                        TestSampleBean.class);

                // List<Sample> allSamples =
                // datahandler.getOpenBisClient()
                // .getSamplesOfProjectBySearchService(projectIdentifier);

                List<Sample> allSamples = datahandler.getOpenBisClient()
                        .getSamplesWithParentsAndChildrenOfProjectBySearchService(id);

                for (Sample sample : allSamples) {
                    checkedTestSamples.put(sample.getCode(), sample);
                    if (sample.getSampleTypeCode().equals("Q_TEST_SAMPLE")) {
                        // samplesContainer.addBean(new SampleBean(sample.getIdentifier(), sample.getCode(),
                        // sample.getSampleTypeCode(), null, null, null, sample.getProperties(), null,
                        // null));

                        Map<String, String> sampleProperties = sample.getProperties();
                        TestSampleBean newBean = new TestSampleBean();
                        newBean.setCode(sample.getCode());
                        newBean.setId(sample.getIdentifier());
                        newBean.setType(sample.getSampleTypeCode());
                        newBean.setSampleType(sampleProperties.get("Q_SAMPLE_TYPE"));
                        newBean.setAdditionalInfo(sampleProperties.get("Q_ADDITIONAL_INFO"));
                        newBean.setExternalDB(sampleProperties.get("Q_EXTERNALDB_ID"));
                        newBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME"));
                        newBean.setProperties(sampleProperties);

                        samplesContainer.addBean(newBean);

                        ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> foundDataset = datasetFilter
                                .get(sample.getIdentifier());

                        if (foundDataset != null) {
                            retrievedDatasets.addAll(foundDataset);
                        }

                        for (Sample child : sample.getChildren()) {
                            foundDataset = datasetFilter.get(child.getIdentifier());
                            if (foundDataset != null) {
                                retrievedDatasets.addAll(foundDataset);
                            }
                        }
                    }

                    else if (sample.getSampleTypeCode().equals("Q_MHC_LIGAND_EXTRACT")) {
                        // samplesContainer.addBean(new SampleBean(sample.getIdentifier(), sample.getCode(),
                        // sample.getSampleTypeCode(), null, null, null, sample.getProperties(), null,
                        // null));

                        Map<String, String> sampleProperties = sample.getProperties();
                        TestSampleBean newBean = new TestSampleBean();
                        newBean.setCode(sample.getCode());
                        newBean.setId(sample.getIdentifier());
                        newBean.setType(sample.getSampleTypeCode());
                        newBean.setSampleType(sampleProperties.get("Q_MHC_CLASS"));
                        newBean.setAdditionalInfo(sampleProperties.get("Q_ANTIBODY"));
                        newBean.setExternalDB(sampleProperties.get("Q_EXTERNALDB_ID"));
                        newBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME"));
                        newBean.setProperties(sampleProperties);

                        samplesContainer.addBean(newBean);

                        ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> foundDataset = datasetFilter
                                .get(sample.getIdentifier());

                        if (foundDataset != null) {
                            retrievedDatasets.addAll(foundDataset);
                        }

                        for (Sample child : sample.getChildren()) {
                            foundDataset = datasetFilter.get(child.getIdentifier());
                            if (foundDataset != null) {
                                retrievedDatasets.addAll(foundDataset);
                            }
                        }
                    }
                }
                numberOfSamples = samplesContainer.size();
                samples = samplesContainer;
                final GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(samples);
                gpc.removeContainerProperty("id");
                gpc.removeContainerProperty("type");
                sampleGrid.setContainerDataSource(gpc);
                sampleGrid.setColumnReorderingAllowed(true);

                gpc.addGeneratedProperty("edit", new PropertyValueGenerator<String>() {
                    @Override
                    public String getValue(Item item, Object itemId, Object propertyId) {
                        return "Edit";
                    }

                    @Override
                    public Class<String> getType() {
                        return String.class;
                    }
                });

                sampleGrid.addItemClickListener(new ItemClickListener() {

                    @Override
                    public void itemClick(ItemClickEvent event) {

                        BeanItem selected = (BeanItem) samples.getItem(event.getItemId());
                        TestSampleBean selectedExp = (TestSampleBean) selected.getBean();

                        State state = (State) UI.getCurrent().getSession().getAttribute("state");
                        ArrayList<String> message = new ArrayList<String>();
                        message.add("clicked");
                        message.add(selectedExp.getId());
                        message.add("sample");
                        state.notifyObservers(message);
                    }
                });

                sampleGrid.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() {

                    @Override
                    public void click(RendererClickEvent event) {
                        BeanItem selected = (BeanItem) samples.getItem(event.getItemId());
                        TestSampleBean selectedSample = (TestSampleBean) selected.getBean();

                        Window subWindow = new Window("Edit Metadata");

                        changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType());
                        VerticalLayout subContent = new VerticalLayout();
                        subContent.setMargin(true);
                        subContent.addComponent(changeMetadata);
                        subWindow.setContent(subContent);
                        // Center it in the browser window
                        subWindow.center();
                        subWindow.setModal(true);
                        subWindow.setIcon(FontAwesome.PENCIL);
                        subWindow.setHeight("75%");
                        subWindow.setResizable(false);

                        subWindow.addCloseListener(new CloseListener() {
                            /**
                             * 
                             */
                            private static final long serialVersionUID = -1329152609834711109L;

                            @Override
                            public void windowClose(CloseEvent e) {
                                updateUI(typeString, idString, filterString);
                            }
                        });
                        QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent();
                        ui.addWindow(subWindow);
                    }
                }));
                sampleGrid.getColumn("edit").setHeaderCaption("");
                sampleGrid.getColumn("edit").setWidth(70);
                sampleGrid.setColumnOrder("edit", "secondaryName", "sampleType", "code", "properties",
                        "additionalInfo", "externalDB");

                helpers.GridFunctions.addColumnFilters(sampleGrid, gpc);
                numberOfSamples = samplesContainer.size();

                sampleGrid.setCaption("Measured Samples");
                this.datasetTable.setCaption("Raw Data");

                numberOfDatasets = retrievedDatasets.size();
                this.datasetTable.setPageLength(Math.max(3, Math.min(numberOfDatasets, 10)));
                // sampleGrid.setHeightMode(HeightMode.ROW);
                // sampleGrid.setHeightByRows(numberOfSamples);
            }

            else if (filterFor.equals("results")) {
                BeanItemContainer<TestSampleBean> samplesContainer = new BeanItemContainer<TestSampleBean>(
                        TestSampleBean.class);

                List<Sample> allSamples = datahandler.getOpenBisClient()
                        .getSamplesWithParentsAndChildrenOfProjectBySearchService(projectIdentifier);

                for (Sample sample : allSamples) {
                    checkedTestSamples.put(sample.getCode(), sample);
                    if (!sample.getSampleTypeCode().equals("Q_TEST_SAMPLE")
                            && !sample.getSampleTypeCode().equals("Q_MICROARRAY_RUN")
                            && !sample.getSampleTypeCode().equals("Q_MS_RUN")
                            && !sample.getSampleTypeCode().equals("Q_BIOLOGICAL_SAMPLE")
                            && !sample.getSampleTypeCode().equals("Q_BIOLOGICAL_ENTITY")
                            && !sample.getSampleTypeCode().equals("Q_NGS_SINGLE_SAMPLE_RUN")) {

                        Map<String, String> sampleProperties = sample.getProperties();
                        TestSampleBean newBean = new TestSampleBean();
                        newBean.setCode(sample.getCode());
                        newBean.setId(sample.getIdentifier());
                        newBean.setType(prettyNameMapper.getPrettyName(sample.getSampleTypeCode()));
                        newBean.setAdditionalInfo(sampleProperties.get("Q_ADDITIONAL_INFO"));
                        newBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME"));
                        newBean.setProperties(sampleProperties);

                        samplesContainer.addBean(newBean);

                        ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> foundDataset = datasetFilter
                                .get(sample.getIdentifier());

                        if (foundDataset != null) {
                            for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet ds : foundDataset) {
                                // we don't want to show project data or log files in the results tab
                                if (ds.getDataSetTypeCode().equals("Q_PROJECT_DATA")) {
                                    if (ds.getProperties().get("Q_ATTACHMENT_TYPE").equals("INFORMATION")) {
                                        continue;
                                    } else {
                                        retrievedDatasets.add(ds);
                                    }
                                } else if (ds.getDataSetTypeCode().contains("LOGS")) {
                                    continue;
                                } else {
                                    retrievedDatasets.add(ds);
                                }
                            }
                            // retrievedDatasets.addAll(foundDataset);
                        }
                    }
                }
                // numberOfSamples = samplesContainer.size();
                samples = samplesContainer;
                final GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(samples);
                gpc.removeContainerProperty("id");
                gpc.removeContainerProperty("sampleType");
                sampleGrid.setContainerDataSource(gpc);
                sampleGrid.setColumnReorderingAllowed(true);
                sampleGrid.setColumnOrder("secondaryName", "type", "code", "properties");
                numberOfSamples = samplesContainer.size();
                // sampleGrid.setHeightMode(HeightMode.ROW);
                // sampleGrid.setHeightByRows(numberOfSamples);

                sampleGrid.setCaption("Workflow Runs");
                helpers.GridFunctions.addColumnFilters(sampleGrid, gpc);
                this.datasetTable.setCaption("Result Files");
                datasetTable.setColumnHeader("Sample", "Workflow Run");

                sampleGrid.addItemClickListener(new ItemClickListener() {

                    @Override
                    public void itemClick(ItemClickEvent event) {

                        BeanItem selected = (BeanItem) samples.getItem(event.getItemId());
                        TestSampleBean selectedExp = (TestSampleBean) selected.getBean();

                        State state = (State) UI.getCurrent().getSession().getAttribute("state");
                        ArrayList<String> message = new ArrayList<String>();
                        message.add("clicked");
                        message.add(selectedExp.getId());
                        message.add("sample");
                        state.notifyObservers(message);
                    }
                });

                numberOfDatasets = retrievedDatasets.size();
                this.datasetTable.setPageLength(Math.max(3, Math.min(numberOfDatasets, 10)));

            }
            break;

        case "experiment":

            String experimentIdentifier = id;
            retrievedDatasets = datahandler.getOpenBisClient()
                    .getDataSetsOfExperimentByCodeWithSearchCriteria(experimentIdentifier);
            break;

        case "sample":
            String sampleIdentifier = id;
            String sampleCode = sampleIdentifier.split("/")[2];
            retrievedDatasets = datahandler.getOpenBisClient().getDataSetsOfSample(sampleCode);
            break;

        default:
            retrievedDatasets = new ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>();
            break;
        }

        BeanItemContainer<DatasetBean> forExport = new BeanItemContainer(DatasetBean.class);
        numberOfDatasets = retrievedDatasets.size();

        if (numberOfDatasets == 0 & filterFor.equals("measured")) {
            descriptionLabel = new Label(String.format(
                    "This project contains %s measured samples for which %s raw data dataset(s) have been registered.",
                    numberOfSamples, 0), ContentMode.HTML);

            helpers.Utils.Notification("No raw data available.",
                    "No raw data is available for this project. Please contact the project manager if this is not expected.",
                    "warning");
        } else if (numberOfDatasets == 0 & filterFor.equals("results")) {
            descriptionLabel = new Label(String.format("This project contains %s result datasets.", 0),
                    ContentMode.HTML);

            helpers.Utils.Notification("No results available.",
                    "No result data is available for this project. Please contact the project manager if this is not expected.",
                    "warning");
        } else {

            Map<String, String> samples = new HashMap<String, String>();

            // project same for all datasets
            String projectCode = retrievedDatasets.get(0).getExperimentIdentifier().split("/")[2];
            for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet dataset : retrievedDatasets) {
                samples.put(dataset.getCode(), dataset.getSampleIdentifierOrNull().split("/")[2]);
            }

            List<DatasetBean> dsBeans = datahandler.queryDatasetsForFolderStructure(retrievedDatasets);

            for (DatasetBean d : dsBeans) {
                Date date = d.getRegistrationDate();
                SimpleDateFormat sd = new SimpleDateFormat("yyyy-MM-dd hh:mm a");
                String dateString = sd.format(date);
                // Timestamp ts = Timestamp.valueOf(dateString);
                String sampleID = samples.get(d.getCode());
                forExport.addBean(d);

                Sample dsSample = checkedTestSamples.get(sampleID);
                String secNameDS = d.getProperties().get("Q_SECONDARY_NAME");
                String secName = datahandler.getSecondaryName(dsSample, secNameDS);

                registerDatasetInTable(d, datasetContainer, projectCode, sampleID, dateString, null, secName);
            }

            if (filterFor.equals("measured"))

            {
                descriptionLabel = new Label(String.format(
                        "This project contains %s measured samples for which %s raw data dataset(s) have been registered.",
                        numberOfSamples, dsBeans.size()), ContentMode.HTML);
            } else if (filterFor.equals("results")) {
                descriptionLabel = new Label(
                        String.format("This project contains %s result datasets.", dsBeans.size()),
                        ContentMode.HTML);
            }

        }

        this.setContainerDataSource(datasetContainer);

        if (fileDownloaderData != null)
            this.exportData.removeExtension(fileDownloaderData);
        StreamResource srData = Utils.getTSVStream(Utils.containerToString(forExport), String.format("%s_%s_",
                id.substring(1).replace("/", "_"), datasetTable.getCaption().replace(" ", "_")));
        fileDownloaderData = new FileDownloader(srData);
        fileDownloaderData.extend(exportData);

        if (fileDownloaderSamples != null)
            this.exportSamples.removeExtension(fileDownloaderSamples);
        StreamResource srSamples = Utils.getTSVStream(Utils.containerToString(samples), String.format("%s_%s_",
                id.substring(1).replace("/", "_"), sampleGrid.getCaption().replaceAll(" ", "_")));
        fileDownloaderSamples = new FileDownloader(srSamples);
        fileDownloaderSamples.extend(exportSamples);

    } catch (Exception e) {
        e.printStackTrace();
        LOGGER.error(String.format("getting dataset failed for dataset %s %s", type, id), e.getStackTrace());
    }
}

From source file:de.uni_tuebingen.qbic.qbicmainportlet.ProjInformationComponent.java

License:Open Source License

private void initUI() {
    vert = new VerticalLayout();
    descHorz = new HorizontalLayout();
    // horz = new HorizontalLayout();
    statusPanel = new Panel();
    descriptionPanel = new Panel();
    datasetTable = buildFilterTable();//from  ww w  .j  av a 2 s.  c  o  m
    peopleInCharge = new Accordion();

    setResponsive(true);
    vert.setResponsive(true);
    descHorz.setResponsive(true);
    statusPanel.setResponsive(true);
    descriptionPanel.setResponsive(true);

    vert.setMargin(new MarginInfo(true, true, false, false));

    setSizeFull();
    vert.setSizeFull();
    descHorz.setSizeFull();
    statusPanel.setSizeFull();
    descriptionPanel.setSizeFull();

    investigator = new Label("", ContentMode.HTML);
    contactPerson = new Label("", ContentMode.HTML);
    projectManager = new Label("", ContentMode.HTML);

    final VerticalLayout layoutI = new VerticalLayout(investigator);
    final VerticalLayout layoutC = new VerticalLayout(contactPerson);
    final VerticalLayout layoutP = new VerticalLayout(projectManager);

    layoutI.setMargin(true);
    layoutC.setMargin(true);
    layoutP.setMargin(true);

    peopleInCharge.addTab(layoutI, "Investigator");
    peopleInCharge.addTab(layoutC, "Contact Person");
    peopleInCharge.addTab(layoutP, "Project Manager");

    descEdit = new Button("Edit");
    descEdit.setIcon(FontAwesome.PENCIL);
    descEdit.setStyleName(ValoTheme.BUTTON_BORDERLESS_COLORED);
    descEdit.setResponsive(true);

    descEdit.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            changeMetadata.updateUI(projectBean);
            VerticalLayout subContent = new VerticalLayout();
            subContent.setMargin(true);
            subContent.addComponent(changeMetadata);

            Window subWindow = new Window("Edit Metadata");
            subWindow.setContent(subContent);
            // Center it in the browser window
            subWindow.center();
            subWindow.setModal(true);
            subWindow.setIcon(FontAwesome.PENCIL);
            subWindow.setHeight("75%");
            subWindow.setResizable(false);
            // subWindow.setSizeFull();

            subWindow.addCloseListener(new CloseListener() {
                /**
                 * 
                 */
                private static final long serialVersionUID = -1329152609834711109L;

                @Override
                public void windowClose(CloseEvent e) {
                    ProjectBean updatedBean = datahandler.getProjectFromDB(projectBean.getId());
                    updateUI(updatedBean, projectType);
                }
            });

            QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent();
            ui.addWindow(subWindow);
        }
    });

    // horz.addComponent(descEdit);
    // horz.setComponentAlignment(descEdit, Alignment.TOP_RIGHT);
    // horz.setExpandRatio(investigator, 0.4f);
    // horz.setExpandRatio(contactPerson, 0.4f);
    // horz.setExpandRatio(descEdit, 0.2f);

    contact = new Label("", ContentMode.HTML);
    patientInformation = new Label("No patient information provided.", ContentMode.HTML);

    experimentLabel = new Label("");
    statusContent = new VerticalLayout();
    hlaTypeLabel = new Label("Not available.", ContentMode.HTML);
    hlaTypeLabel.setStyleName("patientview");

    this.setCompositionRoot(vert);
    // this.setCompositionRoot(mainLayout);
}

From source file:uicomponents.MSSampleMultiplicationTable.java

License:Open Source License

protected void createEnzymeSelectionWindow(String row) {
    Window subWindow = new Window(" Enzyme selection");
    subWindow.setWidth("400px");

    VerticalLayout layout = new VerticalLayout();
    layout.setSpacing(true);/*  ww  w .j  a va  2 s.com*/
    layout.setMargin(true);
    EnzymePanel pan = new EnzymePanel(enzymes);
    Button ok = new Button("Okay.");
    ok.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            List<String> enzymes = pan.getEnzymes();
            ComboBox b = parseBoxRow(row, "Enzyme");
            if (enzymes.isEmpty()) {
                Styles.notification("No enzymes selected", "Please select at least one enzyme!",
                        NotificationType.ERROR);
            } else if (enzymes.size() == 1) {
                b.setValue(enzymes.get(0));
                subWindow.close();
            } else {
                b.addItem("Custom");
                b.setValue("Custom");
                enzymeMap.put(row, enzymes);
                subWindow.close();
            }
        }
    });
    layout.addComponent(pan);
    layout.addComponent(ok);

    subWindow.setContent(layout);
    // Center it in the browser window
    subWindow.center();
    subWindow.setModal(true);
    subWindow.setIcon(FontAwesome.FLASK);
    subWindow.setResizable(false);
    ProjectwizardUI ui = (ProjectwizardUI) UI.getCurrent();
    ui.addWindow(subWindow);
}

From source file:views.MetadataUploadView.java

License:Open Source License

private void createNotRightTypeDialogue(String headline, String moreInfo, String barcode) {
    Window subWindow = new Window(" Wrong data type!");
    subWindow.setWidth("400px");

    VerticalLayout layout = new VerticalLayout();
    layout.setSpacing(true);/*from w ww .  ja v a  2  s  .  c  o  m*/
    layout.setMargin(true);
    Label preInfo = new Label(
            "Data of barcode " + barcode + " in this column doesn't fit the attribute type. " + moreInfo);
    layout.addComponent(preInfo);
    Button ok = new Button("Ignore Column.");
    Button no = new Button("Select different attribute.");
    ok.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            getActiveTable().removeContainerProperty(headline);
            subWindow.close();
        }
    });
    no.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            resetAttribute(headline);
            subWindow.close();
        }
    });
    layout.addComponent(ok);
    layout.addComponent(no);

    subWindow.setContent(layout);
    // Center it in the browser window
    subWindow.center();
    subWindow.setModal(true);
    subWindow.setIcon(FontAwesome.BOLT);
    subWindow.setResizable(false);
    ProjectwizardUI ui = (ProjectwizardUI) UI.getCurrent();
    ui.addWindow(subWindow);
}

From source file:views.MetadataUploadView.java

License:Open Source License

private void createDelimiterChangeDialogue(String headline) {
    Window subWindow = new Window(" Unexpected number format");
    subWindow.setWidth("400px");

    VerticalLayout layout = new VerticalLayout();
    layout.setSpacing(true);/*from ww  w .j a v a 2  s .  c  om*/
    layout.setMargin(true);
    Label preInfo = new Label("The decimal delimiter of this type needs to be replaced with '.'.");
    layout.addComponent(preInfo);
    Button ok = new Button("Change numbers in this column.");
    Button no = new Button("Select different attribute.");
    ok.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            changeDelimiterInCol(headline);
            subWindow.close();
        }
    });
    no.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            resetAttribute(headline);
            subWindow.close();
        }
    });
    layout.addComponent(ok);
    layout.addComponent(no);

    subWindow.setContent(layout);
    // Center it in the browser window
    subWindow.center();
    subWindow.setModal(true);
    subWindow.setIcon(FontAwesome.QUESTION);
    subWindow.setResizable(false);
    ProjectwizardUI ui = (ProjectwizardUI) UI.getCurrent();
    ui.addWindow(subWindow);
}

From source file:views.MetadataUploadView.java

License:Open Source License

private void showStatus() {
    boolean ready = true;
    for (Object colName : getActiveTable().getContainerPropertyIds()) {
        String selected = getSelectedProperty(colName);
        ready &= selected != null && !selected.isEmpty();
    }//w ww . j  av a2 s . c  o  m
    if (ready) {
        fillCollisionsList();
        if (collisions.size() > 0) {
            Window subWindow = new Window(" Collisions found!");
            subWindow.setWidth("400px");

            VerticalLayout layout = new VerticalLayout();
            layout.setSpacing(true);
            layout.setMargin(true);
            Label preInfo = new Label("The following entries exist and would need to be overwritten:");
            layout.addComponent(preInfo);
            TextArea tf = new TextArea();
            tf.setWidth("350px");
            tf.setValue(StringUtils.join(collisions, ""));
            tf.setStyleName(Styles.areaTheme);
            layout.addComponent(tf);
            String overwriteInfo = "In order to keep your data safe, you are not allowed to overwrite existing information by default. "
                    + "You can either remove the columns in question (choose 'ignore column') or contact QBiC.";
            if (overWriteAllowed)
                overwriteInfo = "You can either remove the columns in question (choose 'ignore column') "
                        + "before sending it to the Database or overwrite the metadata.";
            Label info = new Label(overwriteInfo);
            Button ok = new Button("Got it!");
            ok.addClickListener(new ClickListener() {

                @Override
                public void buttonClick(ClickEvent event) {
                    subWindow.close();
                }
            });
            layout.addComponent(info);
            layout.addComponent(ok);

            subWindow.setContent(layout);
            // Center it in the browser window
            subWindow.center();
            subWindow.setModal(true);
            subWindow.setIcon(FontAwesome.BOLT);
            subWindow.setResizable(false);
            ProjectwizardUI ui = (ProjectwizardUI) UI.getCurrent();
            ui.addWindow(subWindow);
        } else {
            Styles.notification("No collisions found!",
                    "You can update the metadata in our database without overwriting something. To do so press 'Send to Database'",
                    NotificationType.DEFAULT);
        }
        send.setEnabled(collisions.isEmpty() || overWriteAllowed);
    } else
        send.setEnabled(false);
}

From source file:views.MetadataUploadView.java

License:Open Source License

protected void createVocabularySelectWindow(ComboBox selected, String propName, List<Label> entries) {
    Window subWindow = new Window(" " + propName);
    subWindow.setWidth("300px");

    VerticalLayout layout = new VerticalLayout();
    layout.setMargin(true);/*from  www.j av a2  s. co m*/
    layout.setSpacing(true);

    // create combobox per unique value for this column to find a mapping to the source vocabulary
    Map<String, String> entriesToVocabValues = new HashMap<String, String>();
    Set<String> uniqueEntries = new HashSet<String>();
    // keep these old values in case user chooses different property afterwards
    List<String> oldEntries = new ArrayList<String>();
    ValueChangeListener resetSelectionListener = new ValueChangeListener() {
        @Override
        public void valueChange(ValueChangeEvent event) {
            // reset labels to what they were before
            for (int i = 0; i < entries.size(); i++) {
                entries.get(i).setValue(oldEntries.get(i));
            }
            // remove reset listener, it won't be needed until a vocabulary field is selected again
            selected.removeValueChangeListener(this);
        }
    };
    selected.addValueChangeListener(resetSelectionListener);

    List<ComboBox> boxes = new ArrayList<ComboBox>();
    Set<String> vocabOptions = propToVocabulary.get(propNameToCode.get(propName)).keySet();
    for (Label l : entries) {
        String val = l.getValue();
        oldEntries.add(val);
        if (!uniqueEntries.contains(val)) {
            ComboBox b = new ComboBox(val);
            b.addItems(vocabOptions);
            b.setNullSelectionAllowed(false);
            b.setStyleName(Styles.boxTheme);
            b.setFilteringMode(FilteringMode.CONTAINS);
            layout.addComponent(b);
            boxes.add(b);
            uniqueEntries.add(val);
            val = StringUtils.capitalize(val);
            if (vocabOptions.contains(val)) {
                b.setValue(val);
                b.setEnabled(false);
            }
        }
    }
    Button send = new Button("Ok");
    send.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            boolean valid = true;
            for (ComboBox b : boxes) {
                if (b.getValue() != null) {
                    String newVal = b.getValue().toString();
                    entriesToVocabValues.put(b.getCaption(), newVal);
                } else
                    valid = false;
            }
            if (valid) {
                for (Label l : entries) {
                    l.setValue(entriesToVocabValues.get(l.getValue()));
                }
                subWindow.close();

                // check for collisions now that values have changed
                reactToTableChange();
            } else {
                String error = "Please select a value for each entry.";
                Styles.notification("Missing Input", error, NotificationType.DEFAULT);
            }
        }
    });
    layout.addComponent(send);

    subWindow.setContent(layout);
    // Center it in the browser window
    subWindow.center();
    subWindow.setModal(true);
    subWindow.setIcon(FontAwesome.FLASK);
    subWindow.setResizable(false);

    ProjectwizardUI ui = (ProjectwizardUI) UI.getCurrent();
    ui.addWindow(subWindow);
}

From source file:views.MetadataUploadView.java

License:Open Source License

protected void createConditionWindow(ComboBox selectionBox) {
    String val = (String) selectionBox.getValue();

    // val.equals("[Experimental Condition]")
    String header = " Experimental Condition Name";
    String prefix = "Condition";
    Resource icon = FontAwesome.FLASK;

    if (val.equals("[Other Property]")) {
        header = " Property Name";
        prefix = "Property";
        icon = FontAwesome.FILE_TEXT;// w  w  w.  jav  a2s  .  c o m
    }
    final String category = prefix;

    Window subWindow = new Window(header);
    subWindow.setWidth("300px");

    VerticalLayout layout = new VerticalLayout();
    layout.setSpacing(true);
    layout.setMargin(true);
    TextField label = new TextField();
    label.setRequired(true);
    label.setStyleName(Styles.fieldTheme);
    RegexpValidator factorLabelValidator = new RegexpValidator("([a-z]+_?[a-z]*)+([a-z]|[0-9]*)",
            "Name must start with a lower case letter and contain only lower case letter words, which can be connected by underscores ('_'). It can end with one or more numbers.");
    label.addValidator(factorLabelValidator);
    label.setValidationVisible(true);
    label.setImmediate(true);

    ComboBox unitSelect = new ComboBox("Unit");
    unitSelect.setNullSelectionAllowed(false);
    unitSelect.addItems(properties.Unit.values());
    String nullItem = "[None]";
    unitSelect.addItem(nullItem);
    unitSelect.select(nullItem);
    unitSelect.setStyleName(Styles.boxTheme);
    unitSelect.setImmediate(true);

    Button send = new Button("Ok");
    send.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            if (label.isValid()) {
                String unit = "";
                if (!unitSelect.getValue().equals(nullItem))
                    unit = " [" + unitSelect.getValue() + "]";
                String name = category + ": " + label.getValue() + unit;
                selectionBox.addItem(name);
                selectionBox.select(name);
                subWindow.close();
            } else {
                String error = "Please input a name for this " + category + ".";
                if (!label.isEmpty())
                    error = factorLabelValidator.getErrorMessage();
                Styles.notification("Missing Input", error, NotificationType.DEFAULT);
            }
        }
    });
    layout.addComponent(label);
    layout.addComponent(unitSelect);
    layout.addComponent(send);

    subWindow.setContent(layout);
    // Center it in the browser window
    subWindow.center();
    subWindow.setModal(true);
    subWindow.setIcon(icon);
    subWindow.setResizable(false);
    ProjectwizardUI ui = (ProjectwizardUI) UI.getCurrent();
    ui.addWindow(subWindow);
}