Example usage for com.vaadin.server FontAwesome FLASK

List of usage examples for com.vaadin.server FontAwesome FLASK

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Prototype

FontAwesome FLASK

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Usage

From source file:com.esofthead.mycollab.module.crm.view.lead.LeadReadViewImpl.java

License:Open Source License

@Override
protected ComponentContainer createButtonControls() {
    CrmPreviewFormControlsGenerator<SimpleLead> controlsButton = new CrmPreviewFormControlsGenerator<>(
            previewForm);/*  w w w. j  a v a  2 s.  c o m*/

    Button convertButton = new Button(AppContext.getMessage(LeadI18nEnum.BUTTON_CONVERT_LEAD),
            new Button.ClickListener() {
                private static final long serialVersionUID = 1L;

                @Override
                public void buttonClick(ClickEvent event) {
                    previewForm.fireExtraAction("convert", beanItem);
                }
            });
    convertButton.setStyleName(UIConstants.THEME_GREEN_LINK);
    convertButton.setIcon(FontAwesome.FLASK);
    controlsButton.insertToControlBlock(convertButton);

    return controlsButton.createButtonControls(RolePermissionCollections.CRM_LEAD);
}

From source file:com.mycollab.module.crm.view.lead.LeadReadViewImpl.java

License:Open Source License

@Override
protected ComponentContainer createButtonControls() {
    CrmPreviewFormControlsGenerator<SimpleLead> controlsButton = new CrmPreviewFormControlsGenerator<>(
            previewForm);/*from  ww  w. j  av a 2  s  . co m*/

    if (UserUIContext.canWrite(RolePermissionCollections.CRM_LEAD)) {
        MButton convertButton = new MButton(UserUIContext.getMessage(LeadI18nEnum.BUTTON_CONVERT_LEAD),
                clickEvent -> previewForm.fireExtraAction("convert", beanItem)).withIcon(FontAwesome.FLASK)
                        .withStyleName(WebThemes.BUTTON_ACTION);
        controlsButton.insertToControlBlock(convertButton);
    }

    return controlsButton.createButtonControls(RolePermissionCollections.CRM_LEAD);
}

From source file:de.uni_tuebingen.qbic.qbicmainportlet.DatasetView.java

License:Open Source License

/**
 * Precondition: {DatasetView#table} has to be initialized. e.g. with
 * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the
 * Layout of this view.//  w  w w  . ja va 2 s.  c o m
 */
private void buildLayout() {
    this.vert.removeAllComponents();

    int browserWidth = UI.getCurrent().getPage().getBrowserWindowWidth();
    int browserHeight = UI.getCurrent().getPage().getBrowserWindowHeight();

    this.vert.setWidth("100%");
    this.setWidth(String.format("%spx", (browserWidth * 0.6)));
    // this.setHeight(String.format("%spx", (browserHeight * 0.8)));

    VerticalLayout statistics = new VerticalLayout();
    HorizontalLayout statContent = new HorizontalLayout();
    statContent.setCaption("Statistics");
    statContent.setIcon(FontAwesome.BAR_CHART_O);
    statContent.addComponent(new Label(String.format("%s registered dataset(s).", numberOfDatasets)));
    statContent.setMargin(true);
    statContent.setSpacing(true);
    statistics.addComponent(statContent);
    statistics.setMargin(true);
    this.vert.addComponent(statistics);

    // Table (containing datasets) section
    VerticalLayout tableSection = new VerticalLayout();
    HorizontalLayout tableSectionContent = new HorizontalLayout();

    tableSectionContent.setCaption("Registered Datasets");
    tableSectionContent.setIcon(FontAwesome.FLASK);
    tableSectionContent.addComponent(this.table);

    tableSectionContent.setMargin(true);
    tableSection.setMargin(true);

    tableSection.addComponent(tableSectionContent);
    this.vert.addComponent(tableSection);

    table.setWidth("100%");
    tableSection.setWidth("100%");
    tableSectionContent.setWidth("100%");

    // this.table.setSizeFull();

    HorizontalLayout buttonLayout = new HorizontalLayout();
    buttonLayout.setHeight(null);
    buttonLayout.setWidth("100%");
    buttonLayout.setSpacing(false);

    final Button visualize = new Button(VISUALIZE_BUTTON_CAPTION);
    buttonLayout.addComponent(this.download);
    buttonLayout.addComponent(visualize);

    Button checkAll = new Button("Select all datasets");
    checkAll.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            for (Object itemId : table.getItemIds()) {
                ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(true);
            }
        }
    });

    Button uncheckAll = new Button("Unselect all datasets");
    uncheckAll.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            for (Object itemId : table.getItemIds()) {
                ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(false);
            }
        }
    });

    buttonLayout.addComponent(checkAll);
    buttonLayout.addComponent(uncheckAll);
    /**
     * prepare download.
     */
    download.setResource(new ExternalResource("javascript:"));
    download.setEnabled(false);
    visualize.setEnabled(false);

    for (final Object itemId : this.table.getItemIds()) {
        setCheckedBox(itemId, (String) this.table.getItem(itemId).getItemProperty("CODE").getValue());
    }

    /*
     * Update the visualize button. It is only enabled, if the files can be visualized.
     */
    this.table.addValueChangeListener(new ValueChangeListener() {
        /**
         * 
         */
        private static final long serialVersionUID = -4875903343717437913L;

        /**
         * check for what selection can be visualized. If so, enable the button. TODO change to
         * checked.
         */
        @Override
        public void valueChange(ValueChangeEvent event) {
            // Nothing selected or more than one selected.
            Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue();
            if (selectedValues == null || selectedValues.size() == 0 || selectedValues.size() > 1) {
                visualize.setEnabled(false);
                return;
            }
            // if one selected check whether its dataset type is either fastqc or qcml.
            // For now we only visulize these two file types.
            Iterator<Object> iterator = selectedValues.iterator();
            Object next = iterator.next();
            String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue();
            String fileName = (String) table.getItem(next).getItemProperty("File Name").getValue();
            // TODO: No hardcoding!!
            // if (datasetType.equals("FASTQC") || datasetType.equals("QCML") ||
            // datasetType.equals("BAM")
            // || datasetType.equals("VCF")) {
            if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS")
                    && (fileName.endsWith(".html") || fileName.endsWith(".qcML"))) {
                visualize.setEnabled(true);
            } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_LOGS")
                    && (fileName.endsWith(".err") || fileName.endsWith(".out"))) {
                visualize.setEnabled(true);
            } else {
                visualize.setEnabled(false);
            }
        }
    });

    // TODO Workflow Views should get those data and be happy
    /*
     * Send message that in datasetview the following was selected. WorkflowViews get those messages
     * and save them, if it is valid information for them.
     */
    this.table.addValueChangeListener(new ValueChangeListener() {
        /**
         * 
         */
        private static final long serialVersionUID = -3554627008191389648L;

        @Override
        public void valueChange(ValueChangeEvent event) {
            // Nothing selected or more than one selected.
            Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue();
            State state = (State) UI.getCurrent().getSession().getAttribute("state");
            ArrayList<String> message = new ArrayList<String>();
            message.add("DataSetView");
            if (selectedValues != null && selectedValues.size() == 1) {
                Iterator<Object> iterator = selectedValues.iterator();
                Object next = iterator.next();
                String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue();
                message.add(datasetType);
                String project = (String) table.getItem(next).getItemProperty("Project").getValue();

                String space = datahandler.getOpenBisClient().getProjectByCode(project).getSpaceCode();// .getIdentifier().split("/")[1];
                message.add(project);
                message.add((String) table.getItem(next).getItemProperty("Sample").getValue());
                // message.add((String) table.getItem(next).getItemProperty("Sample Type").getValue());
                message.add((String) table.getItem(next).getItemProperty("dl_link").getValue());
                message.add((String) table.getItem(next).getItemProperty("File Name").getValue());
                message.add(space);
                // state.notifyObservers(message);
            } else {
                message.add("null");
            } // TODO
              // state.notifyObservers(message);

        }
    });

    // TODO get the GV to work here. Together with reverse proxy
    // Assumes that table Value Change listner is enabling or disabling the button if preconditions
    // are not fullfilled
    visualize.addClickListener(new ClickListener() {
        /**
         * 
         */
        private static final long serialVersionUID = 9015273307461506369L;

        @Override
        public void buttonClick(ClickEvent event) {
            Set<Object> selectedValues = (Set<Object>) table.getValue();
            Iterator<Object> iterator = selectedValues.iterator();
            Object next = iterator.next();
            String datasetCode = (String) table.getItem(next).getItemProperty("CODE").getValue();
            String datasetFileName = (String) table.getItem(next).getItemProperty("File Name").getValue();
            URL url;
            try {
                Object parent = table.getParent(next);
                if (parent != null) {
                    String parentDatasetFileName = (String) table.getItem(parent).getItemProperty("File Name")
                            .getValue();
                    url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode,
                            parentDatasetFileName + "/" + datasetFileName);
                } else {
                    url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, datasetFileName);
                }

                Window subWindow = new Window(
                        "QC of Sample: " + (String) table.getItem(next).getItemProperty("Sample").getValue());
                VerticalLayout subContent = new VerticalLayout();
                subContent.setMargin(true);
                subWindow.setContent(subContent);
                QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent();
                // Put some components in it
                Resource res = null;
                String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue();
                final RequestHandler rh = new ProxyForGenomeViewerRestApi();
                boolean rhAttached = false;
                if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS") && datasetFileName.endsWith(".qcML")) {
                    QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                    StreamResource streamres = new StreamResource(re, datasetFileName);
                    streamres.setMIMEType("application/xml");
                    res = streamres;
                } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS")
                        && datasetFileName.endsWith(".html")) {
                    QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                    StreamResource streamres = new StreamResource(re, datasetFileName);
                    streamres.setMIMEType("text/html");
                    res = streamres;
                } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_LOGS")
                        && (datasetFileName.endsWith(".err") || datasetFileName.endsWith(".out"))) {
                    QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                    StreamResource streamres = new StreamResource(re, datasetFileName);
                    streamres.setMIMEType("text/plain");
                    res = streamres;
                } else if (datasetType.equals("FASTQC")) {
                    res = new ExternalResource(url);
                } else if (datasetType.equals("BAM") || datasetType.equals("VCF")) {
                    String filePath = (String) table.getItem(next).getItemProperty("dl_link").getValue();
                    filePath = String.format("/store%s", filePath.split("store")[1]);
                    String fileId = (String) table.getItem(next).getItemProperty("File Name").getValue();
                    // fileId = "control.1kg.panel.samples.vcf.gz";
                    // UI.getCurrent().getSession().addRequestHandler(rh);
                    rhAttached = true;
                    ThemeDisplay themedisplay = (ThemeDisplay) VaadinService.getCurrentRequest()
                            .getAttribute(WebKeys.THEME_DISPLAY);
                    String hostTmp = "http://localhost:7778/vizrest/rest";// "http://localhost:8080/web/guest/mainportlet?p_p_id=QbicmainportletApplicationPortlet_WAR_QBiCMainPortlet_INSTANCE_5pPd5JQ8uGOt&p_p_lifecycle=2&p_p_state=normal&p_p_mode=view&p_p_cacheability=cacheLevelPage&p_p_col_id=column-1&p_p_col_count=1";
                    // hostTmp +=
                    // "&qbicsession=" + UI.getCurrent().getSession().getAttribute("gv-restapi-session")
                    // + "&someblabla=";
                    // String hostTmp = themedisplay.getURLPortal() +
                    // UI.getCurrent().getPage().getLocation().getPath() + "?qbicsession=" +
                    // UI.getCurrent().getSession().getAttribute("gv-restapi-session") + "&someblabla=" ;
                    // String host = Base64.encode(hostTmp.getBytes());
                    String title = (String) table.getItem(next).getItemProperty("Sample").getValue();
                    // res =
                    // new ExternalResource(
                    // String
                    // .format(
                    // "http://localhost:7778/genomeviewer/?host=%s&title=%s&fileid=%s&featuretype=alignments&filepath=%s&removeZeroGenotypes=false",
                    // host, title, fileId, filePath));
                }
                BrowserFrame frame = new BrowserFrame("", res);
                if (rhAttached) {
                    frame.addDetachListener(new DetachListener() {

                        /**
                         * 
                         */
                        private static final long serialVersionUID = 1534523447730906543L;

                        @Override
                        public void detach(DetachEvent event) {
                            UI.getCurrent().getSession().removeRequestHandler(rh);
                        }

                    });
                }

                frame.setSizeFull();
                subContent.addComponent(frame);

                // Center it in the browser window
                subWindow.center();
                subWindow.setModal(true);
                subWindow.setSizeFull();

                frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.8), Unit.PIXELS);
                // Open it in the UI
                ui.addWindow(subWindow);
            } catch (MalformedURLException e) {
                LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s",
                        datasetCode));
                Notification.show(
                        "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data",
                        Notification.Type.ERROR_MESSAGE);
            }
        }
    });

    this.vert.addComponent(buttonLayout);

}

From source file:de.uni_tuebingen.qbic.qbicmainportlet.PatientView.java

License:Open Source License

/**
 * init this view. builds the layout skeleton Menubar Description and others Statisitcs Experiment
 * Table Graph/*  www  .j  av a  2 s . c  o  m*/
 */
void initView() {
    patientViewContent = new VerticalLayout();
    patientViewContent.setMargin(new MarginInfo(true, false, false, false));
    // patientViewContent.setMargin(true);

    headerLabel = "";

    patientViewTab = new TabSheet();
    patientViewTab.setHeight("100%");
    patientViewTab.setWidth("100%");

    datasetComponent = new DatasetComponent(datahandler, state, resourceUrl);
    biologicalSamplesComponent = new BiologicalSamplesComponent(datahandler, state, resourceUrl,
            "Biological Samples");
    measuredSamplesComponent = new LevelComponent(datahandler, state, resourceUrl, "Raw Data");
    resultsComponent = new LevelComponent(datahandler, state, resourceUrl, "Results");
    statusComponent = new PatientStatusComponent(datahandler, state, resourceUrl);
    workflowComponent = new WorkflowComponent(wfController);
    uploadComponent = new AttachmentUploadComponent();
    projectInformation = new ProjInformationComponent(datahandler, state, resourceUrl);
    experimentComponent = new ExperimentComponent(datahandler, state, resourceUrl);

    patientViewTab.addStyleName(ValoTheme.TABSHEET_EQUAL_WIDTH_TABS);
    patientViewTab.addStyleName(ValoTheme.TABSHEET_FRAMED);
    patientViewTab.addStyleName(ValoTheme.TABSHEET_PADDED_TABBAR);

    // patientViewTab.addTab(initDescription()).setIcon(FontAwesome.INFO_CIRCLE);
    patientViewTab.addTab(projectInformation).setIcon(FontAwesome.INFO_CIRCLE);
    patientViewTab.addTab(statusComponent).setIcon(FontAwesome.CHECK_CIRCLE);
    patientViewTab.addTab(initGraphs()).setIcon(FontAwesome.SITEMAP);
    // patientViewTab.addTab(initMemberSection()).setIcon(FontAwesome.USERS);
    // patientViewTab.addTab(initHLALayout()).setIcon(FontAwesome.BARCODE);
    // patientViewTab.addTab(initTable()).setIcon(FontAwesome.FLASK);

    patientViewTab.addTab(experimentComponent).setIcon(FontAwesome.FLASK);
    patientViewTab.addTab(datasetComponent).setIcon(FontAwesome.DATABASE);
    patientViewTab.addTab(biologicalSamplesComponent).setIcon(FontAwesome.TINT);
    patientViewTab.addTab(measuredSamplesComponent).setIcon(FontAwesome.SIGNAL);
    patientViewTab.addTab(resultsComponent).setIcon(FontAwesome.TH_LARGE);
    patientViewTab.addTab(workflowComponent).setIcon(FontAwesome.COGS);
    patientViewTab.addTab(uploadComponent).setIcon(FontAwesome.UPLOAD);

    patientViewTab.setImmediate(true);

    patientViewTab.addSelectedTabChangeListener(new SelectedTabChangeListener() {

        @Override
        public void selectedTabChange(SelectedTabChangeEvent event) {
            TabSheet tab = (TabSheet) event.getSource();

            if (event.getTabSheet().getSelectedTab().getCaption().equals("Project Graph")) {
                loadGraph();
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Exp. Steps")) {
                experimentComponent.updateUI(getCurrentBean());
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Datasets")) {
                datasetComponent.updateUI("project", getCurrentBean().getId());
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Raw Data")) {
                measuredSamplesComponent.updateUI("project", getCurrentBean().getId(), "measured");
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Biological Samples")) {
                biologicalSamplesComponent.updateUI(getCurrentBean().getId());
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Results")) {
                resultsComponent.updateUI("project", getCurrentBean().getId(), "results");
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Status")) {
                statusComponent.updateUI(getCurrentBean());
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Workflows")) {
                Map<String, String> args = new HashMap<String, String>();
                args.put("id", getCurrentBean().getId());
                args.put("type", "project");
                workflowComponent.update(args);
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Upload Files")) {
                // (get space from currentBean)
                uploadComponent.updateUI(manager, getCurrentBean().getCode(), currentBean.getId().split("/")[1],
                        datahandler.getOpenBisClient());
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("")) {
                projectInformation.updateUI(getCurrentBean(), "patient");
            }
        }
    });

    patientViewContent.addComponent(patientViewTab);
    this.addComponent(patientViewContent);

}

From source file:de.uni_tuebingen.qbic.qbicmainportlet.ProjectView.java

License:Open Source License

/**
 * init this view. builds the layout skeleton Menubar Description and others Statisitcs Experiment
 * Table Graph//  w  w w .j  a v a  2s.  c  o  m
 */
void initView() {
    projectview_content = new VerticalLayout();
    projectview_content.setMargin(new MarginInfo(true, false, false, false));

    // labelContent = new VerticalLayout();
    // labelContent.setMargin(new MarginInfo(true, false, true, false));

    headerLabel = "";

    // labelContent.addComponent(headerLabel);
    // projectview_content.addComponent(labelContent);

    projectview_tab = new TabSheet();
    projectview_tab.setWidth("100%");
    projectview_tab.setHeight("100%");

    datasetComponent = new DatasetComponent(datahandler, state, resourceUrl);
    biologicalSamplesComponent = new BiologicalSamplesComponent(datahandler, state, resourceUrl,
            "Biological Samples");
    measuredSamplesComponent = new LevelComponent(datahandler, state, resourceUrl, "Raw Data");
    resultsComponent = new LevelComponent(datahandler, state, resourceUrl, "Results");
    workflowComponent = new WorkflowComponent(wfController);
    uploadComponent = new AttachmentUploadComponent();
    projectInformation = new ProjInformationComponent(datahandler, state, resourceUrl);
    experimentComponent = new ExperimentComponent(datahandler, state, resourceUrl);

    // add styles to tab sheet
    projectview_tab.addStyleName(ValoTheme.TABSHEET_EQUAL_WIDTH_TABS);
    projectview_tab.addStyleName(ValoTheme.TABSHEET_FRAMED);
    // projectview_tab.addStyleName(ValoTheme.TABSHEET_PADDED_TABBAR);

    // add tabs to tabsheet
    projectview_tab.addTab(projectInformation).setIcon(FontAwesome.INFO_CIRCLE);
    projectview_tab.addTab(initGraphs()).setIcon(FontAwesome.SITEMAP);
    // projectview_tab.addTab(initMemberSection()).setIcon(FontAwesome.USERS);

    projectview_tab.addTab(experimentComponent).setIcon(FontAwesome.FLASK);
    projectview_tab.addTab(datasetComponent).setIcon(FontAwesome.DATABASE);
    projectview_tab.addTab(biologicalSamplesComponent).setIcon(FontAwesome.TINT);
    projectview_tab.addTab(measuredSamplesComponent).setIcon(FontAwesome.SIGNAL);
    projectview_tab.addTab(resultsComponent).setIcon(FontAwesome.TH_LARGE);
    projectview_tab.addTab(workflowComponent).setIcon(FontAwesome.COGS);
    projectview_tab.addTab(uploadComponent).setIcon(FontAwesome.UPLOAD);

    projectview_tab.setImmediate(true);

    projectview_tab.addSelectedTabChangeListener(new SelectedTabChangeListener() {

        @Override
        public void selectedTabChange(SelectedTabChangeEvent event) {
            if (event.getTabSheet().getSelectedTab().getCaption().equals("Project Graph")) {
                loadGraph();
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Exp. Steps")) {
                experimentComponent.updateUI(getCurrentBean());
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Datasets")) {
                datasetComponent.updateUI(navigateToLabel, getCurrentBean().getId());
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Raw Data")) {
                measuredSamplesComponent.updateUI(navigateToLabel, getCurrentBean().getId(), "measured");
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Biological Samples")) {
                biologicalSamplesComponent.updateUI(getCurrentBean().getId());
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Results")) {
                resultsComponent.updateUI(navigateToLabel, getCurrentBean().getId(), "results");
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Workflows")) {
                Map<String, String> args = new HashMap<String, String>();
                args.put("id", getCurrentBean().getId());
                args.put("type", navigateToLabel);
                workflowComponent.update(args);
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("Upload Files")) {
                // (get space from currentBean)
                uploadComponent.updateUI(manager, getCurrentBean().getCode(), currentBean.getId().split("/")[1],
                        datahandler.getOpenBisClient());
            } else if (event.getTabSheet().getSelectedTab().getCaption().equals("")) {
                projectInformation.updateUI(getCurrentBean(), "project");
            }
        }
    });

    // projectview_content.addComponent(initMenuBar());
    projectview_content.addComponent(projectview_tab);
    // projectview_content.addComponent(initDescription());
    // projectview_content.addComponent(initStatistics());
    // projectview_content.addComponent(initTable());
    // projectview_content.addComponent(initButtonLayout());

    // projectview_content.addComponent(initGraph());

    // use the component that is returned by initTable
    // projectview_content.setComponentAlignment(this.table, Alignment.TOP_CENTER);
    // projectview_content.setWidth("100%");
    this.addComponent(projectview_content);
}

From source file:main.ProjectwizardUI.java

License:Open Source License

private void initView(final DBManager dbm, final DBVocabularies vocabularies, final String user) {
    tabs.removeAllComponents();/*from w  ww .  j a  v a  2s .  com*/
    AttachmentConfig attachConfig = new AttachmentConfig(Integer.parseInt(config.getAttachmentMaxSize()),
            config.getAttachmentURI(), config.getAttachmentUser(), config.getAttachmenPassword());
    WizardController c = new WizardController(openbis, dbm, vocabularies, attachConfig);
    c.init(user);
    Wizard w = c.getWizard();
    WizardProgressListener wl = new WizardProgressListener() {

        @Override
        public void activeStepChanged(WizardStepActivationEvent event) {
        }

        @Override
        public void stepSetChanged(WizardStepSetChangedEvent event) {
        }

        @Override
        public void wizardCompleted(WizardCompletedEvent event) {
            vocabularies.setPeople(dbm.fetchPeople());
            vocabularies.setSpaces(openbis.getUserSpaces(user));
            initView(dbm, vocabularies, user);
        }

        @Override
        public void wizardCancelled(WizardCancelledEvent event) {
            vocabularies.setPeople(dbm.fetchPeople());
            vocabularies.setSpaces(openbis.getUserSpaces(user));
            initView(dbm, vocabularies, user);
        }

    };
    w.addListener(wl);
    VerticalLayout wLayout = new VerticalLayout();
    wLayout.addComponent(w);
    wLayout.setMargin(true);

    tabs.addTab(wLayout, "Create Project").setIcon(FontAwesome.FLASK);
    // TODO barcode tab, remove once new portlet is online
    // BarcodeConfig bcConf = new BarcodeConfig(config.getBarcodeScriptsFolder(), tmpFolder,
    // config.getBarcodeResultsFolder(), config.getBarcodePathVariable());
    // SampleFilterGenerator gen = new SampleFilterGenerator();
    // BarcodeController bc = new BarcodeController(openbis, bcConf, dbm);
    // gen.addObserver(bc);
    // final WizardBarcodeView bw = new WizardBarcodeView(vocabularies.getSpaces(), isAdmin, gen);
    // bw.initControl(bc);
    // tabs.addTab(bw, "Create Barcodes").setIcon(FontAwesome.BARCODE);
    // tabs.addSelectedTabChangeListener(new SelectedTabChangeListener() {
    //
    // @Override
    // public void selectedTabChange(SelectedTabChangeEvent event) {
    // bw.resetSpace();
    // }
    // });

    OpenbisCreationController creationController = new OpenbisCreationController(openbis);// will
                                                                                          // not
                                                                                          // work
                                                                                          // when
                                                                                          // openbis
                                                                                          // is down

    ExperimentImportController uc = new ExperimentImportController(creationController, vocabularies, openbis,
            dbm);
    uc.init(user);
    tabs.addTab(uc.getView(), "Import Project").setIcon(FontAwesome.FILE);

    boolean overwriteAllowed = isAdmin || canOverwrite();
    tabs.addTab(new MetadataUploadView(openbis, vocabularies, overwriteAllowed), "Update Metadata")
            .setIcon(FontAwesome.PENCIL);
    ;
    if (isAdmin) {
        logger.info("User is " + user + " and can see admin panel.");
        VerticalLayout padding = new VerticalLayout();
        padding.setMargin(true);
        padding.addComponent(new AdminView(openbis, vocabularies, creationController, user));
        tabs.addTab(padding, "Admin Functions").setIcon(FontAwesome.WRENCH);
    }
    if (overwriteAllowed)
        logger.info("User can overwrite existing metadata for their project.");
}

From source file:uicomponents.MSSampleMultiplicationTable.java

License:Open Source License

protected void createEnzymeSelectionWindow(String row) {
    Window subWindow = new Window(" Enzyme selection");
    subWindow.setWidth("400px");

    VerticalLayout layout = new VerticalLayout();
    layout.setSpacing(true);//  www .  java2 s .  com
    layout.setMargin(true);
    EnzymePanel pan = new EnzymePanel(enzymes);
    Button ok = new Button("Okay.");
    ok.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            List<String> enzymes = pan.getEnzymes();
            ComboBox b = parseBoxRow(row, "Enzyme");
            if (enzymes.isEmpty()) {
                Styles.notification("No enzymes selected", "Please select at least one enzyme!",
                        NotificationType.ERROR);
            } else if (enzymes.size() == 1) {
                b.setValue(enzymes.get(0));
                subWindow.close();
            } else {
                b.addItem("Custom");
                b.setValue("Custom");
                enzymeMap.put(row, enzymes);
                subWindow.close();
            }
        }
    });
    layout.addComponent(pan);
    layout.addComponent(ok);

    subWindow.setContent(layout);
    // Center it in the browser window
    subWindow.center();
    subWindow.setModal(true);
    subWindow.setIcon(FontAwesome.FLASK);
    subWindow.setResizable(false);
    ProjectwizardUI ui = (ProjectwizardUI) UI.getCurrent();
    ui.addWindow(subWindow);
}

From source file:views.MetadataUploadView.java

License:Open Source License

protected void createVocabularySelectWindow(ComboBox selected, String propName, List<Label> entries) {
    Window subWindow = new Window(" " + propName);
    subWindow.setWidth("300px");

    VerticalLayout layout = new VerticalLayout();
    layout.setMargin(true);/*from  ww  w.jav  a  2  s.c o  m*/
    layout.setSpacing(true);

    // create combobox per unique value for this column to find a mapping to the source vocabulary
    Map<String, String> entriesToVocabValues = new HashMap<String, String>();
    Set<String> uniqueEntries = new HashSet<String>();
    // keep these old values in case user chooses different property afterwards
    List<String> oldEntries = new ArrayList<String>();
    ValueChangeListener resetSelectionListener = new ValueChangeListener() {
        @Override
        public void valueChange(ValueChangeEvent event) {
            // reset labels to what they were before
            for (int i = 0; i < entries.size(); i++) {
                entries.get(i).setValue(oldEntries.get(i));
            }
            // remove reset listener, it won't be needed until a vocabulary field is selected again
            selected.removeValueChangeListener(this);
        }
    };
    selected.addValueChangeListener(resetSelectionListener);

    List<ComboBox> boxes = new ArrayList<ComboBox>();
    Set<String> vocabOptions = propToVocabulary.get(propNameToCode.get(propName)).keySet();
    for (Label l : entries) {
        String val = l.getValue();
        oldEntries.add(val);
        if (!uniqueEntries.contains(val)) {
            ComboBox b = new ComboBox(val);
            b.addItems(vocabOptions);
            b.setNullSelectionAllowed(false);
            b.setStyleName(Styles.boxTheme);
            b.setFilteringMode(FilteringMode.CONTAINS);
            layout.addComponent(b);
            boxes.add(b);
            uniqueEntries.add(val);
            val = StringUtils.capitalize(val);
            if (vocabOptions.contains(val)) {
                b.setValue(val);
                b.setEnabled(false);
            }
        }
    }
    Button send = new Button("Ok");
    send.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            boolean valid = true;
            for (ComboBox b : boxes) {
                if (b.getValue() != null) {
                    String newVal = b.getValue().toString();
                    entriesToVocabValues.put(b.getCaption(), newVal);
                } else
                    valid = false;
            }
            if (valid) {
                for (Label l : entries) {
                    l.setValue(entriesToVocabValues.get(l.getValue()));
                }
                subWindow.close();

                // check for collisions now that values have changed
                reactToTableChange();
            } else {
                String error = "Please select a value for each entry.";
                Styles.notification("Missing Input", error, NotificationType.DEFAULT);
            }
        }
    });
    layout.addComponent(send);

    subWindow.setContent(layout);
    // Center it in the browser window
    subWindow.center();
    subWindow.setModal(true);
    subWindow.setIcon(FontAwesome.FLASK);
    subWindow.setResizable(false);

    ProjectwizardUI ui = (ProjectwizardUI) UI.getCurrent();
    ui.addWindow(subWindow);
}

From source file:views.MetadataUploadView.java

License:Open Source License

protected void createConditionWindow(ComboBox selectionBox) {
    String val = (String) selectionBox.getValue();

    // val.equals("[Experimental Condition]")
    String header = " Experimental Condition Name";
    String prefix = "Condition";
    Resource icon = FontAwesome.FLASK;

    if (val.equals("[Other Property]")) {
        header = " Property Name";
        prefix = "Property";
        icon = FontAwesome.FILE_TEXT;//from   ww  w . ja  va 2 s  . c o m
    }
    final String category = prefix;

    Window subWindow = new Window(header);
    subWindow.setWidth("300px");

    VerticalLayout layout = new VerticalLayout();
    layout.setSpacing(true);
    layout.setMargin(true);
    TextField label = new TextField();
    label.setRequired(true);
    label.setStyleName(Styles.fieldTheme);
    RegexpValidator factorLabelValidator = new RegexpValidator("([a-z]+_?[a-z]*)+([a-z]|[0-9]*)",
            "Name must start with a lower case letter and contain only lower case letter words, which can be connected by underscores ('_'). It can end with one or more numbers.");
    label.addValidator(factorLabelValidator);
    label.setValidationVisible(true);
    label.setImmediate(true);

    ComboBox unitSelect = new ComboBox("Unit");
    unitSelect.setNullSelectionAllowed(false);
    unitSelect.addItems(properties.Unit.values());
    String nullItem = "[None]";
    unitSelect.addItem(nullItem);
    unitSelect.select(nullItem);
    unitSelect.setStyleName(Styles.boxTheme);
    unitSelect.setImmediate(true);

    Button send = new Button("Ok");
    send.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            if (label.isValid()) {
                String unit = "";
                if (!unitSelect.getValue().equals(nullItem))
                    unit = " [" + unitSelect.getValue() + "]";
                String name = category + ": " + label.getValue() + unit;
                selectionBox.addItem(name);
                selectionBox.select(name);
                subWindow.close();
            } else {
                String error = "Please input a name for this " + category + ".";
                if (!label.isEmpty())
                    error = factorLabelValidator.getErrorMessage();
                Styles.notification("Missing Input", error, NotificationType.DEFAULT);
            }
        }
    });
    layout.addComponent(label);
    layout.addComponent(unitSelect);
    layout.addComponent(send);

    subWindow.setContent(layout);
    // Center it in the browser window
    subWindow.center();
    subWindow.setModal(true);
    subWindow.setIcon(icon);
    subWindow.setResizable(false);
    ProjectwizardUI ui = (ProjectwizardUI) UI.getCurrent();
    ui.addWindow(subWindow);
}