Example usage for com.mongodb DBObject put

List of usage examples for com.mongodb DBObject put

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Introduction

In this page you can find the example usage for com.mongodb DBObject put.

Prototype

Object put(String key, Object v);

Source Link

Document

Sets a name/value pair in this object.

Usage

From source file:achmad.rifai.erp1.entity.Terima.java

public static Terima of(Db d, String kode) throws Exception {
    Terima t = null;//from  ww  w. j av  a 2  s  .c o m
    achmad.rifai.erp1.util.RSA r = achmad.rifai.erp1.util.Work.loadRSA();
    com.mongodb.DBObject p = new com.mongodb.BasicDBObject();
    p.put("berkas", kode);
    com.mongodb.DBCursor c = d.getD().getCollectionFromString("terima").find(p);
    if (c.hasNext()) {
        com.mongodb.BasicDBList l = (com.mongodb.BasicDBList) c.next().get("bin");
        String json = "";
        for (int x = 0; x < l.size(); x++)
            json += r.decrypt("" + l.get(x));
        t = new Terima(json);
    }
    return t;
}

From source file:achmad.rifai.erp1.entity.Tracks.java

public static Tracks of(Db d, String kode) throws Exception {
    Tracks v = null;//from w w  w. jav a2  s .co m
    achmad.rifai.erp1.util.RSA r = achmad.rifai.erp1.util.Work.loadRSA();
    com.mongodb.DBObject p = new com.mongodb.BasicDBObject();
    p.put("berkas", kode);
    com.mongodb.DBCursor c = d.getD().getCollectionFromString("tracks").find(p);
    while (c.hasNext()) {
        com.mongodb.DBObject o = c.next();
        com.mongodb.BasicDBList l = (com.mongodb.BasicDBList) o.get("bin");
        String json = "";
        for (int x = 0; x < l.size(); x++)
            json += r.decrypt("" + l.get(x));
        v = new Tracks(json);
        break;
    }
    return v;
}

From source file:achmad.rifai.erp1.entity.Tugas.java

public static Tugas of(Db d, String kode) throws Exception {
    Tugas t = null;//from  w  w  w . j av  a 2 s.com
    achmad.rifai.erp1.util.RSA r = achmad.rifai.erp1.util.Work.loadRSA();
    com.mongodb.DBObject p = new com.mongodb.BasicDBObject();
    p.put("berkas", kode);
    com.mongodb.DBCursor c = d.getD().getCollection("tugas").find(p);
    while (c.hasNext()) {
        com.mongodb.DBObject o = c.next();
        com.mongodb.BasicDBList l = (com.mongodb.BasicDBList) o.get("bin");
        String json = "";
        for (int x = 0; x < l.size(); x++)
            json += r.decrypt("" + l.get(x));
        t = new Tugas(json);
        break;
    }
    return t;
}

From source file:act.installer.metacyc.OrganismCompositionMongoWriter.java

License:Open Source License

private BasicDBList metaReferencesToDBList(String id, List<SmallMolMetaData> metas) {
    BasicDBList dbList = new BasicDBList();
    for (SmallMolMetaData meta : metas) {
        DBObject metaObj = meta.getDBObject();
        metaObj.put("id", id);
        dbList.add(metaObj);//from  w  ww.  j  a v  a  2s  .c om
    }
    return dbList;
}

From source file:act.installer.metacyc.OrganismCompositionMongoWriter.java

License:Open Source License

private JSONArray addAllToExistingMetaList(String id, Object existing, List<SmallMolMetaData> metas) {
    JSONArray metaData = null;//from w ww.j  a  va  2  s  .  c  o  m
    if (existing == null) {
        metaData = new JSONArray();
    } else if (existing instanceof JSONArray) {
        metaData = (JSONArray) existing;
    } else {
        System.out.println("SmallMolMetaDataList[0] = " + metas.get(0).toString());
        System.out.println("Existing Chemical.refs[Chemical.REFS.METACYC] not a list! = " + existing);
        System.out.println("It is of type " + existing.getClass().getSimpleName());
        System.out.println("Want to add SmallMolMetaData to list, but its not a list!");
        System.exit(-1);
        return null;
    }

    for (SmallMolMetaData meta : metas) {
        DBObject metaDBObject = meta.getDBObject();
        metaDBObject.put("id", id);
        metaData.put(metaDBObject);
    }
    return metaData;
}

From source file:act.server.MongoDB.java

License:Open Source License

public void submitToActWaterfallDB(Long ID, DBObject waterfall) {
    // insert a new doc to the collection
    waterfall.put("_id", ID);
    this.dbWaterfalls.insert(waterfall);
}

From source file:act.server.MongoDB.java

License:Open Source License

public void submitToActCascadeDB(Long ID, DBObject cascade) {
    // insert a new doc to the collection
    cascade.put("_id", ID);
    this.dbCascades.insert(cascade);
}

From source file:act.server.MongoDB.java

License:Open Source License

public void updateActChemical(Chemical c, Long id) {
    // See comment in updateActReaction about
    // db.collection.update, and $set

    BasicDBObject doc = createChemicalDoc(c, id);
    DBObject query = new BasicDBObject();
    query.put("_id", id);
    this.dbChemicals.update(query, doc);
}

From source file:act.server.MongoDB.java

License:Open Source License

public void updateStoichiometry(Reaction r) {
    BasicDBObject query = new BasicDBObject().append("_id", r.getUUID());
    DBObject obj = this.dbReactions.findOne(query);
    DBObject enz_summary = (DBObject) obj.get("enz_summary");
    BasicDBList substrates = (BasicDBList) enz_summary.get("substrates");
    BasicDBList newSubstrates = new BasicDBList();
    Set<Long> originalSubstrateIDs = new HashSet<Long>();
    for (int i = 0; i < substrates.size(); i++) {
        DBObject substrate = (DBObject) substrates.get(i);
        Long substrateID = (Long) substrate.get("pubchem");
        Boolean isForBalance = (Boolean) substrate.get("balance");
        if (isForBalance != null && isForBalance)
            continue;
        originalSubstrateIDs.add(substrateID);
        substrate.put("coefficient", r.getSubstrateCoefficient(substrateID));
        newSubstrates.add(substrate);/*from  ww w. jav  a  2s . co m*/
    }
    Set<Long> substratesNew = r.getSubstrateIdsOfSubstrateCoefficients();
    for (Long s : substratesNew) {
        if (originalSubstrateIDs.contains(s))
            continue;
        if (r.getSubstrateCoefficient(s) == null)
            continue;
        DBObject substrate = new BasicDBObject();
        substrate.put("pubchem", s);
        substrate.put("coefficient", r.getSubstrateCoefficient(s));
        substrate.put("balance", true);
        newSubstrates.add(substrate);
    }

    BasicDBList products = (BasicDBList) enz_summary.get("products");
    BasicDBList newProducts = new BasicDBList();
    Set<Long> originalProductIDs = new HashSet<Long>();
    for (int i = 0; i < products.size(); i++) {
        DBObject product = (DBObject) products.get(i);
        Long productID = (Long) product.get("pubchem");
        Boolean isForBalance = (Boolean) product.get("balance");
        if (isForBalance != null && isForBalance)
            continue;
        originalProductIDs.add(productID);
        product.put("coefficient", r.getProductCoefficient(productID));
        newProducts.add(product);
    }
    Set<Long> productsNew = r.getProductIdsOfProductCoefficients();
    for (Long p : productsNew) {
        if (originalProductIDs.contains(p))
            continue;
        if (r.getProductCoefficient(p) == null)
            continue;
        DBObject product = new BasicDBObject();
        product.put("pubchem", p);
        product.put("coefficient", r.getProductCoefficient(p));
        product.put("balance", true);
        newProducts.add(product);
    }
    enz_summary.put("substrates", newSubstrates);
    enz_summary.put("products", newProducts);
    this.dbReactions.update(query, obj);
}

From source file:act.server.MongoDB.java

License:Open Source License

public void updateEstimatedEnergy(Chemical chemical) {
    BasicDBObject query = new BasicDBObject().append("_id", chemical.getUuid());
    DBObject obj = this.dbChemicals.findOne(query);
    obj.put("estimateEnergy", chemical.getEstimatedEnergy());
    this.dbChemicals.update(query, obj);
}