Download bdg-utils-parquet-0.1.1.jar file

Introduction

You can download bdg-utils-parquet-0.1.1.jar in this page.

License

Open Source

Type List

bdg-utils-parquet-0.1.1.jar file has the following types. 

META-INF/MANIFEST.MF
META-INF/maven/org.bdgenomics.bdg-utils/bdg-utils-parquet/pom.properties
META-INF/maven/org.bdgenomics.bdg-utils/bdg-utils-parquet/pom.xml
git.properties
org.bdgenomics.utils.parquet.AvroParquetRDD.class
org.bdgenomics.utils.parquet.ParquetAggregateType.class
org.bdgenomics.utils.parquet.ParquetGroupType.class
org.bdgenomics.utils.parquet.ParquetLister.class
org.bdgenomics.utils.parquet.ParquetOriginalType.class
org.bdgenomics.utils.parquet.ParquetPartition.class
org.bdgenomics.utils.parquet.ParquetPrimitiveType.class
org.bdgenomics.utils.parquet.ParquetSchemaType.class
org.bdgenomics.utils.parquet.ParquetType.class
org.bdgenomics.utils.parquet.PartitionPageReadStore.class
org.bdgenomics.utils.parquet.PrimitiveType.class
org.bdgenomics.utils.parquet.Repetition.class
org.bdgenomics.utils.parquet.TypePath.class
org.bdgenomics.utils.parquet.filters.CombinedFilter.class
org.bdgenomics.utils.parquet.filters.FilterTuple.class
org.bdgenomics.utils.parquet.filters.SerializableUnboundRecordFilter.class
org.bdgenomics.utils.parquet.index.AndIndexPredicate.class
org.bdgenomics.utils.parquet.index.AvroParquetFileMetadata.class
org.bdgenomics.utils.parquet.index.IndexEntryPredicate.class
org.bdgenomics.utils.parquet.index.OrIndexPredicate.class
org.bdgenomics.utils.parquet.index.ParquetFileMetadata.class
org.bdgenomics.utils.parquet.index.RowGroupIndex.class
org.bdgenomics.utils.parquet.index.RowGroupIndexEntry.class
org.bdgenomics.utils.parquet.index.RowGroupIndexWriter.class
org.bdgenomics.utils.parquet.io.ByteAccess.class
org.bdgenomics.utils.parquet.io.ByteArrayByteAccess.class
org.bdgenomics.utils.parquet.io.ByteArrayLocator.class
org.bdgenomics.utils.parquet.io.FileLocator.class
org.bdgenomics.utils.parquet.io.HTTPFileLocator.class
org.bdgenomics.utils.parquet.io.HTTPRangedByteAccess.class
org.bdgenomics.utils.parquet.io.LocalFileByteAccess.class
org.bdgenomics.utils.parquet.io.LocalFileLocator.class
org.bdgenomics.utils.parquet.io.S3ByteAccess.class
org.bdgenomics.utils.parquet.io.S3FileLocator.class
org.bdgenomics.utils.parquet.rdd.CompressionCodecEnum.class
org.bdgenomics.utils.parquet.rdd.Footer.class
org.bdgenomics.utils.parquet.rdd.ParquetColumnChunk.class
org.bdgenomics.utils.parquet.rdd.ParquetColumnDescriptor.class
org.bdgenomics.utils.parquet.rdd.ParquetCommon.class
org.bdgenomics.utils.parquet.rdd.ParquetRowGroup.class
org.bdgenomics.utils.parquet.util.ConfigurationFile.class
org.bdgenomics.utils.parquet.util.ConfigurationParser.class
org.bdgenomics.utils.parquet.util.CredentialsProperties.class
org.bdgenomics.utils.parquet.util.SerializableAWSCredentials.class
parquet.avro.UsableAvroRecordMaterializer.class
parquet.format.converter.MyConverter.class

Pom

bdg-utils-parquet-0.1.1.pom file content. 

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <parent>
    <groupId>org.bdgenomics.bdg-utils</groupId>
    <artifactId>bdg-utils-parent</artifactId>
    <version>0.1.1</version>
    <relativePath>../pom.xml</relativePath>
  </parent>
  <artifactId>bdg-utils-parquet</artifactId>
  <packaging>jar</packaging>
  <name>bdg-utils-parquet: Parquet Extensions</name>
  <build>
    <plugins>
      <!-- disable surefire -->
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-plugin</artifactId>
        <configuration>
          <skipTests>true</skipTests>
        </configuration>
      </plugin>
      <!-- enable scalatest -->
      <plugin>
        <groupId>org.scalatest</groupId>
        <artifactId>scalatest-maven-plugin</artifactId>
        <configuration>
          <reportsDirectory>${project.build.directory}/surefire-reports</reportsDirectory>
          <junitxml>.</junitxml>
          <filereports>BDGUtilsParquetTestSuite.txt</filereports>
          <!--
              As explained here: http://stackoverflow.com/questions/1660441/java-flag-to-enable-extended-serialization-debugging-info
              The second option allows us better debugging for serialization-based errors.
          -->
          <argLine>-Xmx1024m -Dsun.io.serialization.extendedDebugInfo=true</argLine>
        </configuration>
        <executions>
          <execution>
            <id>test</id>
            <goals>
              <goal>test</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-jar-plugin</artifactId>
        <executions>
          <execution>
            <goals>
              <goal>test-jar</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <groupId>pl.project13.maven</groupId>
        <artifactId>git-commit-id-plugin</artifactId>
        <executions>
          <execution>
            <goals>
              <goal>revision</goal>
            </goals>
          </execution>
        </executions>
        <configuration>
          <verbose>true</verbose>
          <generateGitPropertiesFile>true</generateGitPropertiesFile>
          <!-- <generateGitPropertiesFilename>adam-cli/src/main/resources/git.properties</generateGitPropertiesFilename> -->
          <generateGitPropertiesFilename>src/main/resources/git.properties</generateGitPropertiesFilename>
          <failOnNoGitDirectory>false</failOnNoGitDirectory>
          <excludeProperties>
            <!-- Avoid email addresses and names: -->
            <excludeProperty>git.commit.user.*</excludeProperty>
            <excludeProperty>git.build.user.*</excludeProperty>
          </excludeProperties>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>build-helper-maven-plugin</artifactId>
        <executions>
          <execution>
            <id>add-source</id>
            <phase>generate-sources</phase>
            <goals>
              <goal>add-source</goal>
            </goals>
            <configuration>
              <sources>
                <source>src/main/scala</source>
              </sources>
            </configuration>
          </execution>
          <execution>
            <id>add-test-source</id>
            <phase>generate-test-sources</phase>
            <goals>
              <goal>add-test-source</goal>
            </goals>
            <configuration>
              <sources>
                <source>src/test/scala</source>
              </sources>
            </configuration>
          </execution>
        </executions>
      </plugin>
    </plugins>
  </build>

  <dependencies>
    <dependency>
      <groupId>org.bdgenomics.bdg-utils</groupId>
      <artifactId>bdg-utils-misc</artifactId>
      <scope>test</scope>
      <type>test-jar</type>
    </dependency>
    <dependency>
      <groupId>org.bdgenomics.bdg-utils</groupId>
      <artifactId>bdg-utils-misc</artifactId>
    </dependency>
    <dependency>
      <groupId>org.scala-lang</groupId>
      <artifactId>scala-library</artifactId>
    </dependency>
    <dependency>
      <groupId>org.apache.hadoop</groupId>
      <artifactId>hadoop-client</artifactId>
    </dependency>
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-core_${scala.artifact.suffix}</artifactId>
    </dependency>
    <dependency>
      <groupId>org.scalatest</groupId>
      <artifactId>scalatest_${scala.artifact.suffix}</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>com.twitter</groupId>
      <artifactId>parquet-avro</artifactId>
    </dependency>
    <dependency>
      <groupId>org.apache.httpcomponents</groupId>
      <artifactId>httpclient</artifactId>
    </dependency>
    <dependency>
      <groupId>com.amazonaws</groupId>
      <artifactId>aws-java-sdk</artifactId>
    </dependency>
    <dependency>
      <groupId>org.bdgenomics.bdg-utils</groupId>
      <artifactId>bdg-utils-misc</artifactId>
      <version>0.1.1</version>
      <scope>test</scope>
    </dependency>
  </dependencies>

  <profiles>
    <profile>
      <id>coverage</id>
      <build>
        <plugins>
          <plugin>
            <groupId>org.scoverage</groupId>
            <artifactId>maven-scoverage-plugin</artifactId>
            <version>${scoverage.version}</version>
            <executions>
              <execution>
                <id>test</id>
                <goals>
                  <goal>report</goal>
                </goals>
              </execution>
            </executions>
          </plugin>
        </plugins>
      </build>
    </profile>
    <profile>
      <id>default</id>
      <activation>
        <activeByDefault>true</activeByDefault>
      </activation>
      <build>
        <plugins>
          <plugin>
            <groupId>org.scalatest</groupId>
            <artifactId>scalatest-maven-plugin</artifactId>
            <configuration>
              <tagsToExclude>org.bdgenomics.adam.util.NetworkConnected,org.bdgenomics.adam.util.S3Test</tagsToExclude>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
    <profile>
      <id>network-connected</id>
      <activation>
        <property>
          <name>networkconnected</name>
        </property>
      </activation>
      <build>
        <plugins>
          <plugin>
            <groupId>org.scalatest</groupId>
            <artifactId>scalatest-maven-plugin</artifactId>
            <configuration>
              <tagsToExclude>org.bdgenomics.adam.util.S3Test</tagsToExclude>
              <tagsToInclude>org.bdgenomics.adam.util.NetworkConnected</tagsToInclude>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
  </profiles>
</project>

POM Entry 

<dependency>
   <groupId>org.bdgenomics.bdg-utils</groupId>
   <artifactId>bdg-utils-parquet</artifactId>
   <version>0.1.1</version>
</dependency>

Download

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Download bdg-utils-parquet-0.1.1.jar file




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