Download bdg-formats-0.4.0.jar file

Introduction

You can download bdg-formats-0.4.0.jar in this page.

License

Apache License

Type List

bdg-formats-0.4.0.jar file has the following types.

META-INF/MANIFEST.MF
META-INF/maven/org.bdgenomics.bdg-formats/bdg-formats/pom.properties
META-INF/maven/org.bdgenomics.bdg-formats/bdg-formats/pom.xml
avro/bdg.avdl
org.bdgenomics.formats.avro.AlignmentRecord.class
org.bdgenomics.formats.avro.BDG.class
org.bdgenomics.formats.avro.Base.class
org.bdgenomics.formats.avro.Contig.class
org.bdgenomics.formats.avro.DatabaseVariantAnnotation.class
org.bdgenomics.formats.avro.Dbxref.class
org.bdgenomics.formats.avro.Feature.class
org.bdgenomics.formats.avro.FlatGenotype.class
org.bdgenomics.formats.avro.Genotype.class
org.bdgenomics.formats.avro.GenotypeAllele.class
org.bdgenomics.formats.avro.GenotypeType.class
org.bdgenomics.formats.avro.NucleotideContigFragment.class
org.bdgenomics.formats.avro.Pileup.class
org.bdgenomics.formats.avro.Strand.class
org.bdgenomics.formats.avro.StructuralVariant.class
org.bdgenomics.formats.avro.StructuralVariantType.class
org.bdgenomics.formats.avro.Variant.class
org.bdgenomics.formats.avro.VariantCallingAnnotations.class
org.bdgenomics.formats.avro.VariantEffect.class

Pom

bdg-formats-0.4.0.pom file content.

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <parent>
    <groupId>org.sonatype.oss</groupId>
    <artifactId>oss-parent</artifactId>
    <version>7</version>
    <relativePath />
  </parent>

  <groupId>org.bdgenomics.bdg-formats</groupId>
  <artifactId>bdg-formats</artifactId>
  <version>0.4.0</version>
  <packaging>jar</packaging>
  <name>Big Data Genomics: Avro Formats</name>

  <url>http://www.bdgenomics.org</url>
  <licenses>
    <license>
      <name>Apache License</name>
      <url>https://raw.github.com/bigdatagenomics/bdg-formats/master/LICENSE.txt</url>
      <distribution>repo</distribution>
    </license>
  </licenses>
  <scm>
    <connection>scm:git:git@github.com:bigdatagenomics/bdg-formats.git</connection>
    <developerConnection>scm:git:git@github.com:bigdatagenomics/bdg-formats.git</developerConnection>
    <url>scm:git:git@github.com:bigdatagenomics/bdg-formats.git</url>
    <tag>master</tag>
  </scm>
  <developers>
    <developer>
      <id>massie</id>
      <name>Matt Massie</name>
      <email>massie@cs.berkeley.edu</email>
      <url>http://www.cs.berkeley.edu/~massie</url>
      <organization>U.C. Berkeley Computer Science</organization>
      <organizationUrl>http://www.cs.berkeley.edu/</organizationUrl>
    </developer>
    <developer>
      <id>fnothaft</id>
      <name>Frank Austin Nothaft</name>
      <email>fnothaft@berkeley.edu</email>
      <url>http://www.fnothaft.net</url>
      <organization>U.C. Berkeley Computer Science</organization>
      <organizationUrl>http://www.cs.berkeley.edu/</organizationUrl>
    </developer>
  </developers>
  <issueManagement>
    <system>github</system>
    <url>https://github.com/bigdatagenomics/bdg-formats/issues</url>
  </issueManagement>

  <properties>
    <avro.version>1.7.4</avro.version>
  </properties>
  
  <build>
    <pluginManagement>
      <plugins>
        <plugin>
          <groupId>org.apache.avro</groupId>
          <artifactId>avro-maven-plugin</artifactId>
          <version>${avro.version}</version>
        </plugin>
      </plugins>
    </pluginManagement>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-gpg-plugin</artifactId>
        <version>1.5</version>
      </plugin>
      <plugin>
        <groupId>org.apache.avro</groupId>
        <artifactId>avro-maven-plugin</artifactId>
        <executions>
          <execution>
            <id>schemas</id>
            <phase>generate-sources</phase>
            <goals>
              <goal>schema</goal>
              <goal>protocol</goal>
              <goal>idl-protocol</goal>
            </goals>
            <configuration>
              <sourceDirectory>${project.basedir}/src/main/resources/avro</sourceDirectory>
              <stringType>String</stringType>
            </configuration>
          </execution>
        </executions>
      </plugin>
    </plugins>
  </build>
  
  <profiles>
    <!-- Only sign artifacts when we are performing a release, not snapshots -->
    <profile>
      <id>sonatype-oss-release</id>
      <build>
        <plugins>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-source-plugin</artifactId>
            <version>2.2.1</version>
            <executions>
              <execution>
                <id>attach-sources</id>
                <goals>
                  <goal>jar-no-fork</goal>
                </goals>
              </execution>
            </executions>
          </plugin>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-javadoc-plugin</artifactId>
            <version>2.9.1</version>
            <executions>
              <execution>
                <id>attach-javadocs</id>
                <goals>
                  <goal>jar</goal>
                </goals>
              </execution>
            </executions>
          </plugin>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-gpg-plugin</artifactId>
            <version>1.5</version>
            <executions>
              <execution>
                <id>sign-artifacts</id>
                <phase>verify</phase>
                <goals>
                  <goal>sign</goal>
                </goals>
              </execution>
            </executions>
          </plugin>
        </plugins>
      </build>
    </profile>
  </profiles>

  <dependencies>
    <dependency>
      <groupId>org.apache.avro</groupId>
      <artifactId>avro</artifactId>
      <version>${avro.version}</version>
    </dependency>
  </dependencies>
</project>

POM Entry

<dependency>
   <groupId>org.bdgenomics.bdg-formats</groupId>
   <artifactId>bdg-formats</artifactId>
   <version>0.4.0</version>
</dependency>

Download

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Download bdg-formats-0.4.0.jar file




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