weka.core.RelationalLocator.java Source code

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/*
 *   This program is free software: you can redistribute it and/or modify
 *   it under the terms of the GNU General Public License as published by
 *   the Free Software Foundation, either version 3 of the License, or
 *   (at your option) any later version.
 *
 *   This program is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *   GNU General Public License for more details.
 *
 *   You should have received a copy of the GNU General Public License
 *   along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

/*
 * RelationalLocator.java
 * Copyright (C) 2006-2012 University of Waikato, Hamilton, New Zealand
 */

package weka.core;

/**
 * This class locates and records the indices of relational attributes,
 * 
 * @author fracpete (fracpete at waikato dot ac dot nz)
 * @version $Revision$
 * @see Attribute#RELATIONAL
 */
public class RelationalLocator extends AttributeLocator {

    /** for serialization */

    private static final long serialVersionUID = 4646872277151854732L;

    /**
     * Initializes the RelationalLocator with the given data.
     * 
     * @param data the data to work on
     */
    public RelationalLocator(Instances data) {
        super(data, Attribute.RELATIONAL);
    }

    /**
     * Initializes the RelationalLocator with the given data. Checks only the
     * given range.
     * 
     * @param data the data to work on
     * @param fromIndex the first index to inspect (including)
     * @param toIndex the last index to check (including)
     */
    public RelationalLocator(Instances data, int fromIndex, int toIndex) {
        super(data, Attribute.RELATIONAL, fromIndex, toIndex);
    }

    /**
     * Initializes the RelationalLocator with the given data. Checks only the
     * specified attribute indices.
     * 
     * @param data the data to work on
     * @param indices the attribute indices to check
     */
    public RelationalLocator(Instances data, int[] indices) {
        super(data, Attribute.RELATIONAL, indices);
    }

    /**
     * Copies relational values contained in the instance copied to a new dataset.
     * The Instance must already be assigned to a dataset. This dataset and the
     * destination dataset must have the same structure.
     * 
     * @param inst the Instance containing the relational values to copy.
     * @param destDataset the destination set of Instances
     * @param strAtts an AttributeLocator containing the indices of any relational
     *          attributes in the dataset.
     */
    public static void copyRelationalValues(Instance inst, Instances destDataset, AttributeLocator strAtts) {

        if (inst.dataset() == null) {
            throw new IllegalArgumentException("Instance has no dataset assigned!!");
        } else if (inst.dataset().numAttributes() != destDataset.numAttributes()) {
            throw new IllegalArgumentException("Src and Dest differ in # of attributes: "
                    + inst.dataset().numAttributes() + " != " + destDataset.numAttributes());
        }
        copyRelationalValues(inst, true, inst.dataset(), strAtts, destDataset, strAtts);
    }

    /**
     * Takes relational values referenced by an Instance and copies them from a
     * source dataset to a destination dataset. The instance references are
     * updated to be valid for the destination dataset. The instance may have the
     * structure (i.e. number and attribute position) of either dataset (this
     * affects where references are obtained from). Only works if the number of
     * relational attributes is the same in both indices (implicitly these
     * relational attributes should be semantically same but just with shifted
     * positions).
     * 
     * @param instance the instance containing references to relations in the
     *          source dataset that will have references updated to be valid for
     *          the destination dataset.
     * @param instSrcCompat true if the instance structure is the same as the
     *          source, or false if it is the same as the destination (i.e. which
     *          of the relational attribute indices contains the correct locations
     *          for this instance).
     * @param srcDataset the dataset for which the current instance relationvalue
     *          references are valid (after any position mapping if needed)
     * @param srcLoc an AttributeLocator containing the indices of relational
     *          attributes in the source datset.
     * @param destDataset the dataset for which the current instance relation
     *          references need to be inserted (after any position mapping if
     *          needed)
     * @param destLoc an AttributeLocator containing the indices of relational
     *          attributes in the destination datset.
     */
    public static void copyRelationalValues(Instance instance, boolean instSrcCompat, Instances srcDataset,
            AttributeLocator srcLoc, Instances destDataset, AttributeLocator destLoc) {
        if (srcDataset == destDataset) {
            return;
        }

        if (srcLoc.getAttributeIndices().length != destLoc.getAttributeIndices().length) {
            throw new IllegalArgumentException("Src and Dest relational indices differ in length: "
                    + srcLoc.getAttributeIndices().length + " != " + destLoc.getAttributeIndices().length);
        }

        if (srcLoc.getLocatorIndices().length != destLoc.getLocatorIndices().length) {
            throw new IllegalArgumentException("Src and Dest locator indices differ in length: "
                    + srcLoc.getLocatorIndices().length + " != " + destLoc.getLocatorIndices().length);
        }

        for (int i = 0; i < srcLoc.getAttributeIndices().length; i++) {
            int instIndex = instSrcCompat ? srcLoc.getActualIndex(srcLoc.getAttributeIndices()[i])
                    : destLoc.getActualIndex(destLoc.getAttributeIndices()[i]);
            Attribute src = srcDataset.attribute(srcLoc.getActualIndex(srcLoc.getAttributeIndices()[i]));
            Attribute dest = destDataset.attribute(destLoc.getActualIndex(destLoc.getAttributeIndices()[i]));
            if (!instance.isMissing(instIndex)) {
                int valIndex = dest.addRelation(src.relation((int) instance.value(instIndex)));
                instance.setValue(instIndex, valIndex);
            }
        }

        // recurse if necessary
        int[] srcIndices = srcLoc.getLocatorIndices();
        int[] destIndices = destLoc.getLocatorIndices();
        for (int i = 0; i < srcIndices.length; i++) {
            int index = instSrcCompat ? srcLoc.getActualIndex(srcIndices[i])
                    : destLoc.getActualIndex(destIndices[i]);
            if (instance.isMissing(index)) {
                continue;
            }
            int valueIndex = (int) instance.value(index);
            Instances rel = instSrcCompat ? srcDataset.attribute(index).relation(valueIndex)
                    : destDataset.attribute(index).relation(valueIndex);
            AttributeLocator srcRelAttsNew = srcLoc.getLocator(srcIndices[i]);
            Instances srcDatasetNew = srcRelAttsNew.getData();
            AttributeLocator destRelAttsNew = destLoc.getLocator(destIndices[i]);
            Instances destDatasetNew = destRelAttsNew.getData();
            for (int n = 0; n < rel.numInstances(); n++) {
                copyRelationalValues(rel.instance(n), instSrcCompat, srcDatasetNew, srcRelAttsNew, destDatasetNew,
                        destRelAttsNew);
            }
        }
    }

    /**
     * Returns the revision string.
     * 
     * @return the revision
     */
    @Override
    public String getRevision() {
        return RevisionUtils.extract("$Revision$");
    }
}