ubic.gemma.core.loader.expression.arrayExpress.SDRFFetcherTest.java Source code

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Here is the source code for ubic.gemma.core.loader.expression.arrayExpress.SDRFFetcherTest.java

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/*
 * The Gemma project
 *
 * Copyright (c) 2006 University of British Columbia
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *       http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *
 */
package ubic.gemma.core.loader.expression.arrayExpress;

import junit.framework.TestCase;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import ubic.gemma.model.common.description.LocalFile;

import java.util.Collection;

/**
 * @author paul
 */
public class SDRFFetcherTest extends TestCase {

    private static final Log log = LogFactory.getLog(SDRFFetcherTest.class.getName());

    public final void testFetch() {
        try {
            SDRFFetcher f = new SDRFFetcher();
            Collection<LocalFile> fetch = f.fetch("E-SMDB-1853");
            TestCase.assertEquals(1, fetch.size());
        } catch (RuntimeException e) {
            if (e.getCause() instanceof java.net.ConnectException) {
                SDRFFetcherTest.log.warn("Test skipped due to connection exception");
            } else if (e.getCause() instanceof java.net.UnknownHostException) {
                SDRFFetcherTest.log.warn("Test skipped due to unknown host exception");
            } else {
                throw (e);
            }
        }
    }

}