org.sf.xrime.algorithms.layout.gfr.CoordinatesAdjust.java Source code

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Here is the source code for org.sf.xrime.algorithms.layout.gfr.CoordinatesAdjust.java

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/*
 * Copyright (C) IBM Corp. 2009.
 * 
 * Licensed under the Apache License, Version 2.0 (the "License"); you may not
 * use this file except in compliance with the License. You may obtain a copy of
 * the License at
 * 
 * http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
 * WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
 * License for the specific language governing permissions and limitations under
 * the License.
 */
package org.sf.xrime.algorithms.layout.gfr;

import java.io.IOException;

import org.apache.hadoop.io.DoubleWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapred.FileInputFormat;
import org.apache.hadoop.mapred.FileOutputFormat;
import org.apache.hadoop.mapred.JobClient;
import org.apache.hadoop.mapred.JobConf;
import org.apache.hadoop.mapred.Mapper;
import org.apache.hadoop.mapred.OutputCollector;
import org.apache.hadoop.mapred.Reporter;
import org.apache.hadoop.mapred.SequenceFileInputFormat;
import org.apache.hadoop.mapred.SequenceFileOutputFormat;
import org.sf.xrime.ProcessorExecutionException;
import org.sf.xrime.algorithms.GraphAlgorithm;
import org.sf.xrime.algorithms.layout.ConstantLabels;
import org.sf.xrime.algorithms.utils.GraphAlgorithmMapReduceBase;
import org.sf.xrime.model.vertex.LabeledAdjSetVertex;

/**
 * This algorithm is used to adjust the coordinates of each vertex. Since we restrict all vertexes
 * within a frame smaller than the input frame, we need to adjust the layout output to make the 
 * final layout center in the input frame.
 * @author xue
 *
 */
public class CoordinatesAdjust extends GraphAlgorithm {
    /**
     * Default constructor.
     */
    public CoordinatesAdjust() {
        super();
    }

    /**
     * Mapper.
     * @author xue
     */
    public static class MapClass extends GraphAlgorithmMapReduceBase
            implements Mapper<Text, LabeledAdjSetVertex, Text, LabeledAdjSetVertex> {

        @Override
        public void map(Text key, LabeledAdjSetVertex value, OutputCollector<Text, LabeledAdjSetVertex> output,
                Reporter reporter) throws IOException {
            // Get displacements for x and y.
            int x_disp = Integer.parseInt(context.getParameter(ConstantLabels.X_DISP));
            int y_disp = Integer.parseInt(context.getParameter(ConstantLabels.Y_DISP));
            // Get the coordinates of this vertex.
            double x_coordinate = ((DoubleWritable) value.getLabel(ConstantLabels.X_COORDINATE)).get();
            double y_coordinate = ((DoubleWritable) value.getLabel(ConstantLabels.Y_COORDINATE)).get();
            x_coordinate += x_disp;
            y_coordinate += y_disp;

            // Update the coordinates.
            value.setLabel(ConstantLabels.X_COORDINATE, new DoubleWritable(x_coordinate));
            value.setLabel(ConstantLabels.Y_COORDINATE, new DoubleWritable(y_coordinate));
            output.collect(key, value);
        }
    }

    @Override
    public void execute() throws ProcessorExecutionException {
        JobConf conf = new JobConf(context, CoordinatesAdjust.class);
        conf.setJobName("CoordinatesAdjust");

        conf.setOutputKeyClass(Text.class);
        conf.setOutputValueClass(LabeledAdjSetVertex.class);
        conf.setMapperClass(MapClass.class);
        // No combiner or reducer is needed..
        // makes the file format suitable for machine processing.
        conf.setInputFormat(SequenceFileInputFormat.class);
        conf.setOutputFormat(SequenceFileOutputFormat.class);
        try {
            FileInputFormat.setInputPaths(conf, getSource().getPath());
            FileOutputFormat.setOutputPath(conf, getDestination().getPath());
        } catch (IllegalAccessException e1) {
            throw new ProcessorExecutionException(e1);
        }
        conf.setNumMapTasks(getMapperNum());
        conf.setNumReduceTasks(0);

        try {
            this.runningJob = JobClient.runJob(conf);
        } catch (IOException e) {
            throw new ProcessorExecutionException(e);
        }
    }
}