org.apache.hadoop.hive.contrib.serde2.RegexSerDe.java Source code

Java tutorial

Introduction

Here is the source code for org.apache.hadoop.hive.contrib.serde2.RegexSerDe.java

Source

/**
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.  See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership.  The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package org.apache.hadoop.hive.contrib.serde2;

import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.MissingFormatArgumentException;
import java.util.Properties;
import java.util.regex.Matcher;
import java.util.regex.Pattern;

import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.hive.serde.serdeConstants;
import org.apache.hadoop.hive.serde2.AbstractSerDe;
import org.apache.hadoop.hive.serde2.SerDeException;
import org.apache.hadoop.hive.serde2.SerDeSpec;
import org.apache.hadoop.hive.serde2.SerDeStats;
import org.apache.hadoop.hive.serde2.objectinspector.ObjectInspector;
import org.apache.hadoop.hive.serde2.objectinspector.ObjectInspectorFactory;
import org.apache.hadoop.hive.serde2.objectinspector.StructField;
import org.apache.hadoop.hive.serde2.objectinspector.StructObjectInspector;
import org.apache.hadoop.hive.serde2.objectinspector.primitive.PrimitiveObjectInspectorFactory;
import org.apache.hadoop.hive.serde2.objectinspector.primitive.StringObjectInspector;
import org.apache.hadoop.hive.serde2.typeinfo.TypeInfo;
import org.apache.hadoop.hive.serde2.typeinfo.TypeInfoFactory;
import org.apache.hadoop.hive.serde2.typeinfo.TypeInfoUtils;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.io.Writable;

/**
 * RegexSerDe uses regular expression (regex) to serialize/deserialize.
 *
 * It can deserialize the data using regex and extracts groups as columns. It
 * can also serialize the row object using a format string.
 *
 * In deserialization stage, if a row does not match the regex, then all columns
 * in the row will be NULL. If a row matches the regex but has less than
 * expected groups, the missing groups will be NULL. If a row matches the regex
 * but has more than expected groups, the additional groups are just ignored.
 *
 * In serialization stage, it uses java string formatter to format the columns
 * into a row. If the output type of the column in a query is not a string, it
 * will be automatically converted to String by Hive.
 *
 * For the format of the format String, please refer to {@link http
 * ://java.sun.com/j2se/1.5.0/docs/api/java/util/Formatter.html#syntax}
 *
 * NOTE: Obviously, all columns have to be strings. Users can use
 * "CAST(a AS INT)" to convert columns to other types.
 *
 * NOTE: This implementation is using String, and javaStringObjectInspector. A
 * more efficient implementation should use UTF-8 encoded Text and
 * writableStringObjectInspector. We should switch to that when we have a UTF-8
 * based Regex library.
 */
@SerDeSpec(schemaProps = { serdeConstants.LIST_COLUMNS, serdeConstants.LIST_COLUMN_TYPES, RegexSerDe.INPUT_REGEX,
        RegexSerDe.OUTPUT_FORMAT_STRING, RegexSerDe.INPUT_REGEX_CASE_SENSITIVE })
public class RegexSerDe extends AbstractSerDe {

    public static final Log LOG = LogFactory.getLog(RegexSerDe.class.getName());

    public static final String INPUT_REGEX = "input.regex";
    public static final String OUTPUT_FORMAT_STRING = "output.format.string";
    public static final String INPUT_REGEX_CASE_SENSITIVE = "input.regex.case.insensitive";

    int numColumns;
    String inputRegex;
    String outputFormatString;

    Pattern inputPattern;

    StructObjectInspector rowOI;
    ArrayList<String> row;

    @Override
    public void initialize(Configuration conf, Properties tbl) throws SerDeException {

        // We can get the table definition from tbl.

        // Read the configuration parameters
        inputRegex = tbl.getProperty(INPUT_REGEX);
        outputFormatString = tbl.getProperty(OUTPUT_FORMAT_STRING);
        String columnNameProperty = tbl.getProperty(serdeConstants.LIST_COLUMNS);
        String columnTypeProperty = tbl.getProperty(serdeConstants.LIST_COLUMN_TYPES);
        boolean inputRegexIgnoreCase = "true".equalsIgnoreCase(tbl.getProperty(INPUT_REGEX_CASE_SENSITIVE));

        // Parse the configuration parameters
        if (inputRegex != null) {
            inputPattern = Pattern.compile(inputRegex,
                    Pattern.DOTALL + (inputRegexIgnoreCase ? Pattern.CASE_INSENSITIVE : 0));
        } else {
            inputPattern = null;
        }
        List<String> columnNames = Arrays.asList(columnNameProperty.split(","));
        List<TypeInfo> columnTypes = TypeInfoUtils.getTypeInfosFromTypeString(columnTypeProperty);
        assert columnNames.size() == columnTypes.size();
        numColumns = columnNames.size();

        // All columns have to be of type STRING.
        for (int c = 0; c < numColumns; c++) {
            if (!columnTypes.get(c).equals(TypeInfoFactory.stringTypeInfo)) {
                throw new SerDeException(getClass().getName() + " only accepts string columns, but column[" + c
                        + "] named " + columnNames.get(c) + " has type " + columnTypes.get(c));
            }
        }

        // Constructing the row ObjectInspector:
        // The row consists of some string columns, each column will be a java
        // String object.
        List<ObjectInspector> columnOIs = new ArrayList<ObjectInspector>(columnNames.size());
        for (int c = 0; c < numColumns; c++) {
            columnOIs.add(PrimitiveObjectInspectorFactory.javaStringObjectInspector);
        }
        // StandardStruct uses ArrayList to store the row.
        rowOI = ObjectInspectorFactory.getStandardStructObjectInspector(columnNames, columnOIs);

        // Constructing the row object, etc, which will be reused for all rows.
        row = new ArrayList<String>(numColumns);
        for (int c = 0; c < numColumns; c++) {
            row.add(null);
        }
        outputFields = new Object[numColumns];
        outputRowText = new Text();
    }

    @Override
    public ObjectInspector getObjectInspector() throws SerDeException {
        return rowOI;
    }

    @Override
    public Class<? extends Writable> getSerializedClass() {
        return Text.class;
    }

    // Number of rows not matching the regex
    long unmatchedRows = 0;
    long nextUnmatchedRows = 1;
    // Number of rows that match the regex but have missing groups.
    long partialMatchedRows = 0;
    long nextPartialMatchedRows = 1;

    long getNextNumberToDisplay(long now) {
        return now * 10;
    }

    @Override
    public Object deserialize(Writable blob) throws SerDeException {

        if (inputPattern == null) {
            throw new SerDeException("This table does not have serde property \"input.regex\"!");
        }
        Text rowText = (Text) blob;

        Matcher m = inputPattern.matcher(rowText.toString());

        // If do not match, ignore the line, return a row with all nulls.
        if (!m.matches()) {
            unmatchedRows++;
            if (unmatchedRows >= nextUnmatchedRows) {
                nextUnmatchedRows = getNextNumberToDisplay(nextUnmatchedRows);
                // Report the row
                LOG.warn("" + unmatchedRows + " unmatched rows are found: " + rowText);
            }
            return null;
        }

        // Otherwise, return the row.
        for (int c = 0; c < numColumns; c++) {
            try {
                row.set(c, m.group(c + 1));
            } catch (RuntimeException e) {
                partialMatchedRows++;
                if (partialMatchedRows >= nextPartialMatchedRows) {
                    nextPartialMatchedRows = getNextNumberToDisplay(nextPartialMatchedRows);
                    // Report the row
                    LOG.warn("" + partialMatchedRows + " partially unmatched rows are found, "
                            + " cannot find group " + c + ": " + rowText);
                }
                row.set(c, null);
            }
        }
        return row;
    }

    Object[] outputFields;
    Text outputRowText;

    @Override
    public Writable serialize(Object obj, ObjectInspector objInspector) throws SerDeException {

        if (outputFormatString == null) {
            throw new SerDeException("Cannot write data into table because \"output.format.string\""
                    + " is not specified in serde properties of the table.");
        }

        // Get all the fields out.
        // NOTE: The correct way to get fields out of the row is to use
        // objInspector.
        // The obj can be a Java ArrayList, or a Java class, or a byte[] or
        // whatever.
        // The only way to access the data inside the obj is through
        // ObjectInspector.

        StructObjectInspector outputRowOI = (StructObjectInspector) objInspector;
        List<? extends StructField> outputFieldRefs = outputRowOI.getAllStructFieldRefs();
        if (outputFieldRefs.size() != numColumns) {
            throw new SerDeException("Cannot serialize the object because there are " + outputFieldRefs.size()
                    + " fields but the table has " + numColumns + " columns.");
        }

        // Get all data out.
        for (int c = 0; c < numColumns; c++) {
            Object field = outputRowOI.getStructFieldData(obj, outputFieldRefs.get(c));
            ObjectInspector fieldOI = outputFieldRefs.get(c).getFieldObjectInspector();
            // The data must be of type String
            StringObjectInspector fieldStringOI = (StringObjectInspector) fieldOI;
            // Convert the field to Java class String, because objects of String type
            // can be
            // stored in String, Text, or some other classes.
            outputFields[c] = fieldStringOI.getPrimitiveJavaObject(field);
        }

        // Format the String
        String outputRowString = null;
        try {
            outputRowString = String.format(outputFormatString, outputFields);
        } catch (MissingFormatArgumentException e) {
            throw new SerDeException(
                    "The table contains " + numColumns + " columns, but the outputFormatString is asking for more.",
                    e);
        }
        outputRowText.set(outputRowString);
        return outputRowText;
    }

    @Override
    public SerDeStats getSerDeStats() {
        // no support for statistics
        return null;
    }

}