ispyb.server.mx.services.ws.rest.phasing.PhasingRestWsServiceBean.java Source code

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Here is the source code for ispyb.server.mx.services.ws.rest.phasing.PhasingRestWsServiceBean.java

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/*******************************************************************************
 * This file is part of ISPyB.
 * 
 * ISPyB is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 * 
 * ISPyB is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Lesser General Public License for more details.
 * 
 * You should have received a copy of the GNU Lesser General Public License
 * along with ISPyB.  If not, see <http://www.gnu.org/licenses/>.
 * 
 * Contributors : S. Delageniere, R. Leal, L. Launer, K. Levik, S. Veyrier, P. Brenchereau, M. Bodin, A. De Maria Antolinos
 ******************************************************************************************************************************/

package ispyb.server.mx.services.ws.rest.phasing;

import ispyb.server.mx.services.ws.rest.WsServiceBean;

import java.util.List;
import java.util.Map;

import javax.ejb.Stateless;
import javax.persistence.EntityManager;
import javax.persistence.PersistenceContext;

import org.hibernate.SQLQuery;
import org.hibernate.Session;
import org.hibernate.transform.AliasToEntityMapResultTransformer;

@Stateless
public class PhasingRestWsServiceBean extends WsServiceBean
        implements PhasingRestWsService, PhasingRestWsServiceLocal {
    /** The entity manager. */
    @PersistenceContext(unitName = "ispyb_db")
    private EntityManager entityManager;

    private String getPhasingViewTableQuery() {
        return this.getQueryFromResourceFile("/queries/PhasingRestWsServiceBean/getViewTableQuery.sql");
    }

    private String ByDataCollectionGroupId = getPhasingViewTableQuery()
            + " where DataCollection_dataCollectionGroupId = :dataCollectionGroupId and BLSession_proposalId = :proposalId group by PhasingStep_phasingStepId";
    private String ByDataCollectionId = getPhasingViewTableQuery()
            + " where DataCollection_dataCollectionId = :dataCollectionId and BLSession_proposalId = :proposalId group by PhasingStep_phasingStepId";
    private String ByAutoProcIntegrationId = getPhasingViewTableQuery()
            + " where AutoProcIntegration_autoProcIntegrationId = :autoprocIntegrationId and BLSession_proposalId = :proposalId group by PhasingStep_phasingStepId";
    private String ByPhasingStepId = getPhasingViewTableQuery()
            + " where PhasingStep_phasingStepId = :phasingStepId and BLSession_proposalId = :proposalId group by PhasingStep_phasingStepId";

    private String BySampleId = getPhasingViewTableQuery()
            + " where BLSample_blSampleId = :blSampleId and BLSession_proposalId = :proposalId group by PhasingStep_phasingStepId";
    private String ByProteinId = getPhasingViewTableQuery()
            + " where Protein_proteinId = :Protein_proteinId and BLSession_proposalId = :proposalId group by PhasingStep_phasingStepId";
    private String BySessionId = getPhasingViewTableQuery()
            + " where BLSession_sessionId = :sessionId and BLSession_proposalId = :proposalId group by PhasingStep_phasingStepId";

    @Override
    public List<Map<String, Object>> getPhasingViewByDataCollectionGroupId(int dataCollectionGroupId,
            int proposalId) {
        Session session = (Session) this.entityManager.getDelegate();
        SQLQuery query = session.createSQLQuery(ByDataCollectionGroupId);
        query.setParameter("dataCollectionGroupId", dataCollectionGroupId);
        query.setParameter("proposalId", proposalId);
        System.out.println(query.getQueryString());
        return executeSQLQuery(query);
    }

    @Override
    public List<Map<String, Object>> getPhasingViewByDataCollectionId(int dataCollectionId, int proposalId) {
        Session session = (Session) this.entityManager.getDelegate();
        SQLQuery query = session.createSQLQuery(ByDataCollectionId);
        query.setParameter("dataCollectionId", dataCollectionId);
        query.setParameter("proposalId", proposalId);
        System.out.println(query.getQueryString());
        return executeSQLQuery(query);
    }

    @Override
    public List<Map<String, Object>> getPhasingViewByAutoProcIntegrationId(int autoprocIntegrationId,
            int proposalId) {
        Session session = (Session) this.entityManager.getDelegate();
        SQLQuery query = session.createSQLQuery(ByAutoProcIntegrationId);
        query.setParameter("autoprocIntegrationId", autoprocIntegrationId);
        query.setParameter("proposalId", proposalId);
        return executeSQLQuery(query);
    }

    @Override
    public List<Map<String, Object>> getPhasingViewByBlSampleId(int blSampleId, int proposalId) {
        Session session = (Session) this.entityManager.getDelegate();
        SQLQuery query = session.createSQLQuery(BySampleId);
        query.setParameter("blSampleId", blSampleId);
        query.setParameter("proposalId", proposalId);
        return executeSQLQuery(query);
    }

    @Override
    public List<Map<String, Object>> getPhasingViewByProteinId(int proteinId, int proposalId) {
        Session session = (Session) this.entityManager.getDelegate();
        SQLQuery query = session.createSQLQuery(ByProteinId);
        query.setParameter("proteinId", proteinId);
        query.setParameter("proposalId", proposalId);
        return executeSQLQuery(query);
    }

    @Override
    public List<Map<String, Object>> getPhasingViewBySessionId(int sessionId, int proposalId) {
        Session session = (Session) this.entityManager.getDelegate();
        SQLQuery query = session.createSQLQuery(BySessionId);
        query.setParameter("sessionId", sessionId);
        query.setParameter("proposalId", proposalId);
        return executeSQLQuery(query);
    }

    @Override
    public List<Map<String, Object>> getPhasingViewByStepId(int phasingStepId, int proposalId) {
        Session session = (Session) this.entityManager.getDelegate();
        SQLQuery query = session.createSQLQuery(ByPhasingStepId);
        query.setParameter("phasingStepId", phasingStepId);
        query.setParameter("proposalId", proposalId);
        return executeSQLQuery(query);
    }

    private String getPhasingFilesViewTableQuery() {
        return "select * from v_datacollection_phasing_program_run ";
    }

    private String FilesByPhasingStepId = getPhasingFilesViewTableQuery()
            + " where phasingStepId = :phasingStepId and proposalId = :proposalId";

    private String FilesByPhasingProgramAttachmentId = getPhasingFilesViewTableQuery()
            + " where phasingProgramAttachmentId = :phasingProgramAttachmentId and proposalId = :proposalId";

    @Override
    public List<Map<String, Object>> getPhasingFilesViewByStepId(int phasingStepId, int proposalId) {
        Session session = (Session) this.entityManager.getDelegate();
        SQLQuery query = session.createSQLQuery(FilesByPhasingStepId);
        query.setParameter("phasingStepId", phasingStepId);
        query.setParameter("proposalId", proposalId);
        return executeSQLQuery(query);
    }

    @Override
    public List<Map<String, Object>> getPhasingFilesViewByPhasingProgramAttachmentId(int phasingProgramAttachmentId,
            int proposalId) {
        Session session = (Session) this.entityManager.getDelegate();
        SQLQuery query = session.createSQLQuery(FilesByPhasingProgramAttachmentId);
        System.out.println("SQL ----------------");
        System.out.println(FilesByPhasingProgramAttachmentId);
        System.out.println(String.valueOf(phasingProgramAttachmentId));
        query.setParameter("phasingProgramAttachmentId", phasingProgramAttachmentId);
        query.setParameter("proposalId", proposalId);
        return executeSQLQuery(query);
    }

}