edu.isi.mavuno.score.UpdateWeights.java Source code

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/*
 * Mavuno: A Hadoop-Based Text Mining Toolkit
 * 
 * Licensed under the Apache License, Version 2.0 (the "License"); you
 * may not use this file except in compliance with the License. You may
 * obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0 
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
 * implied. See the License for the specific language governing
 * permissions and limitations under the License.
 */

package edu.isi.mavuno.score;

import java.io.IOException;

import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.conf.Configured;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.DoubleWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.io.Writable;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.Reducer;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.mapreduce.lib.output.SequenceFileOutputFormat;
import org.apache.hadoop.util.Tool;
import org.apache.log4j.Logger;

import edu.isi.mavuno.util.ContextPatternStatsWritable;
import edu.isi.mavuno.util.ContextPatternWritable;
import edu.isi.mavuno.util.MavunoUtils;

/**
 * @author metzler
 *
 */
public class UpdateWeights extends Configured implements Tool {
    private static final Logger sLogger = Logger.getLogger(UpdateWeights.class);

    public UpdateWeights(Configuration conf) {
        super(conf);
    }

    private static class MyMapper
            extends Mapper<ContextPatternWritable, Writable, ContextPatternWritable, ContextPatternStatsWritable> {

        private final ContextPatternStatsWritable mStats = new ContextPatternStatsWritable();

        @Override
        public void map(ContextPatternWritable key, Writable value,
                Mapper<ContextPatternWritable, Writable, ContextPatternWritable, ContextPatternStatsWritable>.Context context)
                throws IOException, InterruptedException {
            if (value instanceof DoubleWritable) {
                mStats.weight = ((DoubleWritable) value).get();
                context.write(key, mStats);
            } else {
                context.write(key, (ContextPatternStatsWritable) value);
            }
        }

    }

    private static class MyReducer extends
            Reducer<ContextPatternWritable, ContextPatternStatsWritable, ContextPatternWritable, ContextPatternStatsWritable> {

        private double mWeight;

        private final Text mContext = new Text();
        private final Text mPattern = new Text();

        private boolean mPatternType = false;
        private boolean mContextType = false;

        @Override
        public void setup(
                Reducer<ContextPatternWritable, ContextPatternStatsWritable, ContextPatternWritable, ContextPatternStatsWritable>.Context context) {
            Configuration conf = context.getConfiguration();

            mPatternType = false;
            mContextType = false;

            String exampleType = conf.get("Mavuno.UpdateWeights.ExampleType").toLowerCase();
            if ("pattern".equals(exampleType)) {
                mPatternType = true;
            } else if ("context".equals(exampleType)) {
                mContextType = true;
            } else {
                throw new RuntimeException("Invalid ExampleType in UpdateExampleWeight -- " + exampleType);
            }
        }

        @Override
        public void reduce(ContextPatternWritable key, Iterable<ContextPatternStatsWritable> values,
                Reducer<ContextPatternWritable, ContextPatternStatsWritable, ContextPatternWritable, ContextPatternStatsWritable>.Context context)
                throws IOException, InterruptedException {
            if (mPatternType) {
                for (ContextPatternStatsWritable value : values) {
                    if (key.getContext().equals(ContextPatternWritable.ASTERISK)) {
                        mWeight = value.weight;
                        mPattern.set(key.getPattern());
                    } else if (key.getPattern().equals(mPattern)) {
                        value.weight = mWeight;
                        context.write(key, value);
                    }
                }
            } else if (mContextType) {
                for (ContextPatternStatsWritable value : values) {
                    if (key.getPattern().equals(ContextPatternWritable.ASTERISK)) {
                        mWeight = value.weight;
                        mContext.set(key.getContext());
                    } else if (key.getContext().equals(mContext)) {
                        value.weight = mWeight;
                        context.write(key, value);
                    }
                }
            }
        }

    }

    /* (non-Javadoc)
     * @see org.apache.hadoop.util.Tool#run(java.lang.String[])
     */
    @Override
    public int run(String[] args) throws ClassNotFoundException, InterruptedException, IOException {
        MavunoUtils.readParameters(args, "Mavuno.UpdateWeights", getConf());
        return run();
    }

    public int run() throws ClassNotFoundException, InterruptedException, IOException {
        Configuration conf = getConf();

        String statsPath = MavunoUtils.getRequiredParam("Mavuno.UpdateWeights.StatsPath", conf);
        String scoresPath = MavunoUtils.getRequiredParam("Mavuno.UpdateWeights.ScoresPath", conf);
        String exampleType = MavunoUtils.getRequiredParam("Mavuno.UpdateWeights.ExampleType", conf).toLowerCase();
        String outputPath = MavunoUtils.getRequiredParam("Mavuno.UpdateWeights.OutputPath", conf);

        sLogger.info("Tool name: UpdateWeights");
        sLogger.info(" - Stats path: " + statsPath);
        sLogger.info(" - Scores path: " + scoresPath);
        sLogger.info(" - Example type: " + exampleType);
        sLogger.info(" - Output path: " + outputPath);

        Job job = new Job(conf);
        job.setJobName("UpdateWeights");

        FileInputFormat.addInputPath(job, new Path(statsPath));
        FileInputFormat.addInputPath(job, new Path(scoresPath));
        FileOutputFormat.setOutputPath(job, new Path(outputPath));

        job.setInputFormatClass(SequenceFileInputFormat.class);
        job.setOutputFormatClass(SequenceFileOutputFormat.class);

        job.setMapOutputKeyClass(ContextPatternWritable.class);

        if ("pattern".equals(exampleType)) {
            job.setSortComparatorClass(ContextPatternWritable.IdPatternComparator.class);
        } else if ("context".equals(exampleType)) {
            job.setSortComparatorClass(ContextPatternWritable.Comparator.class);
        } else {
            throw new RuntimeException("Invalid ExampleType in UpdateExampleWeight -- " + exampleType);
        }

        job.setPartitionerClass(ContextPatternWritable.IdPartitioner.class);
        job.setMapOutputValueClass(ContextPatternStatsWritable.class);

        job.setOutputKeyClass(ContextPatternWritable.class);
        job.setOutputValueClass(ContextPatternStatsWritable.class);

        job.setMapperClass(MyMapper.class);
        job.setReducerClass(MyReducer.class);

        job.waitForCompletion(true);
        return 0;
    }

}