Java tutorial
/* Copyright 2010 Wageningen University, Division of Human Nutrition. * Drs. R. Kerkhoven, robert.kerkhoven@wur.nl * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ package ctd.services; import com.skaringa.javaxml.NoImplementationException; import com.skaringa.javaxml.ObjectTransformer; import com.skaringa.javaxml.ObjectTransformerFactory; import com.skaringa.javaxml.SerializerException; import ctd.model.StudySampleAssay; import ctd.model.Ticket; import ctd.ws.model.AssayInfo; import ctd.ws.model.ProbeSetExpression; import ctd.ws.model.ProbeSetZscore; import ctd.ws.model.ZscoresDataSet; import java.util.ArrayList; import java.util.Iterator; import java.util.logging.Level; import java.util.logging.Logger; import org.hibernate.Query; import org.hibernate.SQLQuery; import org.hibernate.Session; import org.hibernate.SessionFactory; import org.hibernate.cfg.Configuration; /** * * @author kerkh010 */ public class getExperimentInfo { private String password; public String getExperimentInfo() throws NoImplementationException, SerializerException { String message = ""; ArrayList<AssayInfo> array = new ArrayList<AssayInfo>(); //open hibernate connection SessionFactory sessionFactory = new Configuration().configure().buildSessionFactory(); Session session = sessionFactory.openSession(); Ticket ticket = null; Query q1 = session.createQuery("from Ticket where password='" + getPassword() + "'"); ticket = (Ticket) q1.uniqueResult(); Iterator it1 = ticket.getStudySampleAssaies().iterator(); while (it1.hasNext()) { AssayInfo ai = new AssayInfo(); StudySampleAssay ssa = (StudySampleAssay) it1.next(); String x_ref_name = ssa.getXREF(); String raw_name = ssa.getNameRawfile(); Double avg = ssa.getAverage(); Double std = ssa.getStd(); ai.setAverage(avg); ai.setNameRawfile(raw_name); ai.setXREF(x_ref_name); ai.setStd(std); array.add(ai); } session.close(); sessionFactory.close(); //////////////////// //SKARINGA ObjectTransformer trans = null; try { trans = ObjectTransformerFactory.getInstance().getImplementation(); } catch (NoImplementationException ex) { Logger.getLogger(getTicket.class.getName()).log(Level.SEVERE, null, ex); } message = trans.serializeToString(array); return message; } /** * @return the password */ public String getPassword() { return password; } /** * @param password the password to set */ public void setPassword(String password) { this.password = password; } }