adams.flow.sink.WekaFileWriter.java Source code

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/*
 *   This program is free software: you can redistribute it and/or modify
 *   it under the terms of the GNU General Public License as published by
 *   the Free Software Foundation, either version 3 of the License, or
 *   (at your option) any later version.
 *
 *   This program is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *   GNU General Public License for more details.
 *
 *   You should have received a copy of the GNU General Public License
 *   along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

/*
 * WekaFileWriter.java
 * Copyright (C) 2009-2017 University of Waikato, Hamilton, New Zealand
 */

package adams.flow.sink;

import adams.core.QuickInfoHelper;
import adams.core.Shortening;
import adams.core.io.FileUtils;
import adams.core.option.OptionUtils;
import weka.core.Instances;
import weka.core.converters.AbstractFileSaver;
import weka.core.converters.ConverterUtils;
import weka.core.converters.ConverterUtils.DataSink;
import weka.core.converters.SimpleArffSaver;

import java.io.File;

/**
 <!-- globalinfo-start -->
 * Actor for saving a weka.core.Instances object as file.<br>
 * The relation name of the incoming dataset can be used to replace the current filename (path and extension are kept).
 * <br><br>
 <!-- globalinfo-end -->
 *
 <!-- flow-summary-start -->
 * Input&#47;output:<br>
 * - accepts:<br>
 * &nbsp;&nbsp;&nbsp;weka.core.Instances<br>
 * <br><br>
 <!-- flow-summary-end -->
 *
 <!-- options-start -->
 * Valid options are: <br><br>
 *
 * <pre>-D &lt;int&gt; (property: debugLevel)
 * &nbsp;&nbsp;&nbsp;The greater the number the more additional info the scheme may output to
 * &nbsp;&nbsp;&nbsp;the console (0 = off).
 * &nbsp;&nbsp;&nbsp;default: 0
 * &nbsp;&nbsp;&nbsp;minimum: 0
 * </pre>
 *
 * <pre>-name &lt;java.lang.String&gt; (property: name)
 * &nbsp;&nbsp;&nbsp;The name of the actor.
 * &nbsp;&nbsp;&nbsp;default: WekaFileWriter
 * </pre>
 *
 * <pre>-annotation &lt;adams.core.base.BaseText&gt; (property: annotations)
 * &nbsp;&nbsp;&nbsp;The annotations to attach to this actor.
 * &nbsp;&nbsp;&nbsp;default:
 * </pre>
 *
 * <pre>-skip (property: skip)
 * &nbsp;&nbsp;&nbsp;If set to true, transformation is skipped and the input token is just forwarded
 * &nbsp;&nbsp;&nbsp;as it is.
 * </pre>
 *
 * <pre>-stop-flow-on-error (property: stopFlowOnError)
 * &nbsp;&nbsp;&nbsp;If set to true, the flow gets stopped in case this actor encounters an error;
 * &nbsp;&nbsp;&nbsp; useful for critical actors.
 * </pre>
 *
 * <pre>-output &lt;adams.core.io.PlaceholderFile&gt; (property: outputFile)
 * &nbsp;&nbsp;&nbsp;The filename of the dataset to write (the file extension determines the
 * &nbsp;&nbsp;&nbsp;file format).
 * &nbsp;&nbsp;&nbsp;default: .
 * </pre>
 *
 * <pre>-use-relation (property: useRelationNameAsFilename)
 * &nbsp;&nbsp;&nbsp;If set to true, then the relation name replaces the name of the output file;
 * &nbsp;&nbsp;&nbsp; eg if the output file is '&#47;some&#47;where&#47;file.arff' and the relation is 'anneal'
 * &nbsp;&nbsp;&nbsp; then the resulting file name will be '&#47;some&#47;where&#47;anneal.arff'.
 * </pre>
 *
 * <pre>-use-custom (property: useCustomSaver)
 * &nbsp;&nbsp;&nbsp;If set to true, then the custom saver will be used for saving the data.
 * </pre>
 *
 * <pre>-saver &lt;weka.core.converters.AbstractFileSaver [options]&gt; (property: customSaver)
 * &nbsp;&nbsp;&nbsp;The custom saver to use if enabled.
 * &nbsp;&nbsp;&nbsp;default: weka.core.converters.SimpleArffSaver
 * </pre>
 *
 <!-- options-end -->
 *
 * @author  fracpete (fracpete at waikato dot ac dot nz)
 * @version $Revision$
 */
public class WekaFileWriter extends AbstractFileWriter {

    /** for serialization. */
    private static final long serialVersionUID = 7509908838736709270L;

    /** whether to use the relation name as filename. */
    protected boolean m_UseRelationNameAsFilename;

    /** whether to use a custom converter. */
    protected boolean m_UseCustomSaver;

    /** the custom saver. */
    protected AbstractFileSaver m_CustomSaver;

    /**
     * Returns a string describing the object.
     *
     * @return          a description suitable for displaying in the gui
     */
    @Override
    public String globalInfo() {
        return "Actor for saving a weka.core.Instances object as file.\n"
                + "The relation name of the incoming dataset can be used to replace the "
                + "current filename (path and extension are kept).";
    }

    /**
     * Adds options to the internal list of options.
     */
    @Override
    public void defineOptions() {
        super.defineOptions();

        m_OptionManager.add("use-relation", "useRelationNameAsFilename", false);

        m_OptionManager.add("use-custom", "useCustomSaver", false);

        m_OptionManager.add("saver", "customSaver", new SimpleArffSaver());
    }

    /**
     * Returns the tip text for this property.
     *
     * @return       tip text for this property suitable for
     *          displaying in the GUI or for listing the options.
     */
    @Override
    public String outputFileTipText() {
        return "The filename of the dataset to write (the file extension determines the file format).";
    }

    /**
     * Sets whether to use the relation name as filename instead.
     *
     * @param value   if true then the relation name will be used
     */
    public void setUseRelationNameAsFilename(boolean value) {
        m_UseRelationNameAsFilename = value;
        reset();
    }

    /**
     * Returns whether the relation name is used as filename.
     *
     * @return      true if the relation name is used
     */
    public boolean getUseRelationNameAsFilename() {
        return m_UseRelationNameAsFilename;
    }

    /**
     * Returns the tip text for this property.
     *
     * @return       tip text for this property suitable for
     *          displaying in the GUI or for listing the options.
     */
    public String useRelationNameAsFilenameTipText() {
        return "If set to true, then the relation name replaces the name of the output "
                + "file; eg if the output file is '/some/where/file.arff' and the "
                + "relation is 'anneal' then the resulting file name will be " + "'/some/where/anneal.arff'.";
    }

    /**
     * Sets whether to use a custom saver or not.
     *
     * @param value   if true then the custom saver will be used
     */
    public void setUseCustomSaver(boolean value) {
        m_UseCustomSaver = value;
        reset();
    }

    /**
     * Returns whether a custom saver is used or not.
     *
     * @return      true if a custom saver is used
     */
    public boolean getUseCustomSaver() {
        return m_UseCustomSaver;
    }

    /**
     * Returns the tip text for this property.
     *
     * @return       tip text for this property suitable for
     *          displaying in the GUI or for listing the options.
     */
    public String useCustomSaverTipText() {
        return "If set to true, then the custom saver will be used for saving the data.";
    }

    /**
     * Sets the custom saver to use.
     *
     * @param value   the custom saver
     */
    public void setCustomSaver(AbstractFileSaver value) {
        m_CustomSaver = value;
        reset();
    }

    /**
     * Returns the custom saver in use.
     *
     * @return      the custom saver
     */
    public AbstractFileSaver getCustomSaver() {
        return m_CustomSaver;
    }

    /**
     * Returns the tip text for this property.
     *
     * @return       tip text for this property suitable for
     *          displaying in the GUI or for listing the options.
     */
    public String customSaverTipText() {
        return "The custom saver to use if enabled.";
    }

    /**
     * Returns a quick info about the actor, which will be displayed in the GUI.
     *
     * @return      null if no info available, otherwise short string
     */
    @Override
    public String getQuickInfo() {
        String result;
        String value;

        result = super.getQuickInfo();

        result += QuickInfoHelper.toString(this, "useRelationNameAsFilename", m_UseRelationNameAsFilename,
                "relation name as filename", ", ");

        if (QuickInfoHelper.hasVariable(this, "useCustomSaver") || m_UseCustomSaver) {
            value = QuickInfoHelper.toString(this, "customSaver",
                    Shortening.shortenEnd(OptionUtils.getShortCommandLine(getCustomSaver()), 40), ", saver: ");
            if (value != null)
                result += value;
        }

        return result;
    }

    /**
     * Returns the class that the consumer accepts.
     *
     * @return      <!-- flow-accepts-start -->weka.core.Instances.class<!-- flow-accepts-end -->
     */
    public Class[] accepts() {
        return new Class[] { Instances.class };
    }

    /**
     * Hook for performing setup checks -- used in setUp() and preExecute().
     *
     * @param fromSetUp   whether the method has been called from within setUp()
     * @return      null if everything OK, otherwise error message
     */
    @Override
    protected String performSetUpChecks(boolean fromSetUp) {
        String result;

        result = super.performSetUpChecks(fromSetUp);

        if (result == null) {
            if (!m_UseCustomSaver && canPerformSetUpCheck(fromSetUp, "outputFile")) {
                if (ConverterUtils.getSaverForFile(m_OutputFile.getAbsolutePath()) == null)
                    result = "Cannot determine converter for file '" + m_OutputFile.getAbsolutePath() + "'!";

            }
        }

        return result;
    }

    /**
     * Executes the flow item.
     *
     * @return      null if everything is fine, otherwise error message
     */
    @Override
    protected String doExecute() {
        String result;
        Instances data;
        String filename;
        File file;
        DataSink sink;

        result = null;

        data = (Instances) m_InputToken.getPayload();
        filename = null;
        try {
            // determine filename
            filename = m_OutputFile.getAbsolutePath();
            if (m_UseRelationNameAsFilename) {
                file = new File(filename);
                filename = file.getParent() + File.separator + FileUtils.createFilename(data.relationName(), "_")
                        + file.getName().replaceAll(".*\\.", ".");
            }

            if (m_UseCustomSaver) {
                m_CustomSaver.setFile(new File(filename));
                sink = new DataSink(m_CustomSaver);
            } else {
                sink = new DataSink(filename);
            }

            // save file
            sink.write(data);
        } catch (Exception e) {
            result = handleException("Failed to save dataset to: " + filename, e);
        }

        return result;
    }
}