Example usage for weka.clusterers MakeDensityBasedClusterer setMinStdDev

Introduction

In this page you can find the example usage for weka.clusterers MakeDensityBasedClusterer setMinStdDev.

Prototype

public void setMinStdDev(double m) 

Source Link

Document

Set the minimum value for standard deviation when calculating normal density.

Usage

From source file:br.com.ufu.lsi.rebfnetwork.RBFNetwork.java

License:Open Source License

/**
 * Builds the classifier/*from  w w  w  . j  ava2 s . c o m*/
 *
 * @param instances the training data
 * @throws Exception if the classifier could not be built successfully
 */
public void buildClassifier(Instances instances) throws Exception {

    // can classifier handle the data?
    getCapabilities().testWithFail(instances);

    // remove instances with missing class
    instances = new Instances(instances);
    instances.deleteWithMissingClass();

    // only class? -> build ZeroR model
    if (instances.numAttributes() == 1) {
        System.err.println(
                "Cannot build model (only class attribute present in data!), " + "using ZeroR model instead!");
        m_ZeroR = new weka.classifiers.rules.ZeroR();
        m_ZeroR.buildClassifier(instances);
        return;
    } else {
        m_ZeroR = null;
    }

    m_standardize = new Standardize();
    m_standardize.setInputFormat(instances);
    instances = Filter.useFilter(instances, m_standardize);

    SimpleKMeans sk = new SimpleKMeans();
    sk.setNumClusters(m_numClusters);
    sk.setSeed(m_clusteringSeed);
    MakeDensityBasedClusterer dc = new MakeDensityBasedClusterer();
    dc.setClusterer(sk);
    dc.setMinStdDev(m_minStdDev);
    m_basisFilter = new ClusterMembership();
    m_basisFilter.setDensityBasedClusterer(dc);
    m_basisFilter.setInputFormat(instances);
    Instances transformed = Filter.useFilter(instances, m_basisFilter);

    if (instances.classAttribute().isNominal()) {
        m_linear = null;
        m_logistic = new Logistic();
        m_logistic.setRidge(m_ridge);
        m_logistic.setMaxIts(m_maxIts);
        m_logistic.buildClassifier(transformed);
    } else {
        m_logistic = null;
        m_linear = new LinearRegression();
        m_linear.setAttributeSelectionMethod(
                new SelectedTag(LinearRegression.SELECTION_NONE, LinearRegression.TAGS_SELECTION));
        m_linear.setRidge(m_ridge);
        m_linear.buildClassifier(transformed);
    }
}

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