List of usage examples for org.w3c.dom Node getFirstChild
public Node getFirstChild();
From source file:edu.toronto.cs.cidb.ncbieutils.NCBIEUtilsAccessService.java
protected List<Map<String, Object>> getSummaries(List<String> idList) { // response example at // http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=omim&id=190685,605298,604829,602917,601088,602523,602259 // response type: XML // return it/*from www. java 2 s . c o m*/ String queryList = getSerializedList(idList); String url = composeURL(TERM_SUMMARY_QUERY_SCRIPT, TERM_SUMMARY_PARAM_NAME, queryList); try { Document response = readXML(url); NodeList nodes = response.getElementsByTagName("Item"); // OMIM titles are all UPPERCASE, try to fix this for (int i = 0; i < nodes.getLength(); ++i) { Node n = nodes.item(i); if (n.getNodeType() == Node.ELEMENT_NODE) { if (n.getFirstChild() != null) { n.replaceChild(response.createTextNode(fixCase(n.getTextContent())), n.getFirstChild()); } } } List<Map<String, Object>> result = new LinkedList<Map<String, Object>>(); nodes = response.getElementsByTagName("DocSum"); for (int i = 0; i < nodes.getLength(); ++i) { Element n = (Element) nodes.item(i); Map<String, Object> doc = new HashMap<String, Object>(); doc.put("id", n.getElementsByTagName("Id").item(0).getTextContent()); NodeList items = n.getElementsByTagName("Item"); for (int j = 0; j < items.getLength(); ++j) { Element item = (Element) items.item(j); if ("List".equals(item.getAttribute("Type"))) { NodeList subitems = item.getElementsByTagName("Item"); if (subitems.getLength() > 0) { List<String> values = new ArrayList<String>(subitems.getLength()); for (int k = 0; k < subitems.getLength(); ++k) { values.add(subitems.item(k).getTextContent()); } doc.put(item.getAttribute("Name"), values); } } else { String value = item.getTextContent(); if (StringUtils.isNotEmpty(value)) { doc.put(item.getAttribute("Name"), value); } } } result.add(doc); } return result; } catch (Exception ex) { this.logger.error("Error while trying to retrieve summaries for ids " + idList + " " + ex.getClass().getName() + " " + ex.getMessage(), ex); } return Collections.emptyList(); }
From source file:Main.java
private static String getMetaScriptType(Document doc) { // Can not just do a Document.getElementsByTagName(String) as this // needs//from ww w. j a v a2 s . com // to be relatively fast. List metas = new ArrayList(); // check for META tags under the Document Node html = null; Node head = null; Node child = null; // ---------------------------------------------------------------------- // (pa) 20021217 // cmvc defect 235554 // performance enhancement: using child.getNextSibling() rather than // nodeList(item) for O(n) vs. O(n*n) // ---------------------------------------------------------------------- for (child = doc.getFirstChild(); child != null; child = child.getNextSibling()) { if (child.getNodeType() != Node.ELEMENT_NODE) { continue; } if (child.getNodeName().equalsIgnoreCase(META)) { metas.add(child); } else if (child.getNodeName().equalsIgnoreCase(HTML)) { html = child; } } // NodeList children = doc.getChildNodes(); // for(int i = 0; i < children.getLength(); i++) { // child = children.item(i); // if(child.getNodeType() != Node.ELEMENT_NODE) // continue; // if(child.getNodeName().equalsIgnoreCase(META)) // metas.add(child); // else if(child.getNodeName().equalsIgnoreCase(HTML)) // html = child; // } // check for META tags under HEAD if (html != null) { for (child = html.getFirstChild(); (child != null) && (head == null); child = child.getNextSibling()) { if (child.getNodeType() != Node.ELEMENT_NODE) { continue; } if (child.getNodeName().equalsIgnoreCase(HEAD)) { head = child; } } // children = html.getChildNodes(); // for(int i = 0; i < children.getLength() && head == null; i++) { // child = children.item(i); // if(child.getNodeType() != Node.ELEMENT_NODE) // continue; // if(child.getNodeName().equalsIgnoreCase(HEAD)) // head = child; // } } if (head != null) { for (head.getFirstChild(); child != null; child = child.getNextSibling()) { if (child.getNodeType() != Node.ELEMENT_NODE) { continue; } if (child.getNodeName().equalsIgnoreCase(META)) { metas.add(child); } } // children = head.getChildNodes(); // for(int i = 0 ; i < children.getLength(); i++) { // child = children.item(i); // if(child.getNodeType() != Node.ELEMENT_NODE) // continue; // if(child.getNodeName().equalsIgnoreCase(META)) // metas.add(child); // } } return getMetaScriptType(metas); }
From source file:net.sourceforge.eclipsetrader.ats.Repository.java
TradingSystem loadTradingSystem(NodeList node) {
TradingSystem obj = new TradingSystem(
new Integer(Integer.parseInt(((Node) node).getAttributes().getNamedItem("id").getNodeValue())));
for (int i = 0; i < node.getLength(); i++) {
Node item = node.item(i);
String nodeName = item.getNodeName();
Node value = item.getFirstChild();
if (value != null) {
if (nodeName.equals("name")) //$NON-NLS-1$
obj.setName(value.getNodeValue());
else if (nodeName.equals("account")) //$NON-NLS-1$
{//ww w .j a v a 2 s . c o m
Integer id = new Integer(value.getNodeValue());
Account account = (Account) CorePlugin.getRepository().load(Account.class, id);
if (account == null) {
log.warn("Unknown account (id=" + id + ")");
account = new DefaultAccount(id);
}
obj.setAccount(account);
} else if (nodeName.equals("tradingProvider")) //$NON-NLS-1$
obj.setTradingProviderId(value.getNodeValue());
}
if (nodeName.equals("moneyManager")) //$NON-NLS-1$
obj.setMoneyManager(loadComponent(item.getChildNodes()));
else if (nodeName.equalsIgnoreCase("param") == true) {
NamedNodeMap map = item.getAttributes();
obj.getParams().put(map.getNamedItem("key").getNodeValue(),
map.getNamedItem("value").getNodeValue());
}
if (nodeName.equals("strategy")) //$NON-NLS-1$
obj.addStrategy(loadStrategy(item.getChildNodes()));
}
obj.clearChanged();
return obj;
}
From source file:com.mirth.connect.model.converters.ER7Serializer.java
public Map<String, String> getMetadataFromDocument(Document document) { Map<String, String> metadata = new HashMap<String, String>(); if (useStrictParser) { try {/*from w w w . ja v a2 s . c o m*/ DocumentSerializer serializer = new DocumentSerializer(); String source = serializer.toXML(document); Message message = xmlParser.parse(source); Terser terser = new Terser(message); String sendingFacility = terser.get("/MSH-4-1"); String event = terser.get("/MSH-9-1") + "-" + terser.get("/MSH-9-2"); metadata.put("version", message.getVersion()); metadata.put("type", event); metadata.put("source", sendingFacility); return metadata; } catch (Exception e) { logger.error(e.getMessage()); return metadata; } } else { if (document.getElementsByTagName("MSH.4.1").getLength() > 0) { Node senderNode = document.getElementsByTagName("MSH.4.1").item(0); if ((senderNode != null) && (senderNode.getFirstChild() != null)) { metadata.put("source", senderNode.getFirstChild().getTextContent()); } else { metadata.put("source", ""); } } if (document.getElementsByTagName("MSH.9").getLength() > 0) { if (document.getElementsByTagName("MSH.9.1").getLength() > 0) { Node typeNode = document.getElementsByTagName("MSH.9.1").item(0); if (typeNode != null) { String type = typeNode.getFirstChild().getNodeValue(); if (document.getElementsByTagName("MSH.9.2").getLength() > 0) { Node subTypeNode = document.getElementsByTagName("MSH.9.2").item(0); type += "-" + subTypeNode.getFirstChild().getTextContent(); } metadata.put("type", type); } else { metadata.put("type", "Unknown"); } } } if (document.getElementsByTagName("MSH.12.1").getLength() > 0) { Node versionNode = document.getElementsByTagName("MSH.12.1").item(0); if (versionNode != null) { metadata.put("version", versionNode.getFirstChild().getTextContent()); } else { metadata.put("version", ""); } } return metadata; } }
From source file:net.sourceforge.eclipsetrader.ats.Repository.java
Strategy loadStrategy(NodeList node) {
NamedNodeMap map = ((Node) node).getAttributes();
Strategy obj = new Strategy(new Integer(map.getNamedItem("id").getNodeValue()));
if (map.getNamedItem("pluginId") != null)
obj.setPluginId(map.getNamedItem("pluginId").getNodeValue());
if (map.getNamedItem("autostart") != null)
obj.setAutoStart(map.getNamedItem("autostart").getNodeValue().equals("true"));
for (int i = 0; i < node.getLength(); i++) {
Node item = node.item(i);
String nodeName = item.getNodeName();
Node value = item.getFirstChild();
if (value != null) {
if (nodeName.equals("name")) //$NON-NLS-1$
obj.setName(value.getNodeValue());
}/* w w w . ja va2 s . c o m*/
if (nodeName.equals("marketManager")) //$NON-NLS-1$
obj.setMarketManager(loadComponent(item.getChildNodes()));
else if (nodeName.equals("entry")) //$NON-NLS-1$
obj.setEntry(loadComponent(item.getChildNodes()));
else if (nodeName.equals("exit")) //$NON-NLS-1$
obj.setExit(loadComponent(item.getChildNodes()));
else if (nodeName.equals("moneyManager")) //$NON-NLS-1$
obj.setMoneyManager(loadComponent(item.getChildNodes()));
else if (nodeName.equalsIgnoreCase("security") == true) {
map = item.getAttributes();
Integer id = new Integer(map.getNamedItem("id").getNodeValue());
Security security = (Security) CorePlugin.getRepository().load(Security.class, id);
if (security == null)
log.warn("Unknown security (id=" + id + ")");
else
obj.addSecurity(security);
}
if (nodeName.equalsIgnoreCase("param") == true) {
map = item.getAttributes();
obj.getParams().put(map.getNamedItem("key").getNodeValue(),
map.getNamedItem("value").getNodeValue());
}
}
obj.clearChanged();
return obj;
}
From source file:com.l2jfree.gameserver.model.mapregion.L2MapRegionRestart.java
public L2MapRegionRestart(Node node) { _restartId = Integer.parseInt(node.getAttributes().getNamedItem("restartId").getNodeValue()); _name = node.getAttributes().getNamedItem("name").getNodeValue(); _bbsId = Integer.parseInt(node.getAttributes().getNamedItem("bbs").getNodeValue()); _locName = Integer.parseInt(node.getAttributes().getNamedItem("locname").getNodeValue()); for (Node n = node.getFirstChild(); n != null; n = n.getNextSibling()) { if ("normal".equalsIgnoreCase(n.getNodeName())) { _restartPoints = ArrayUtils.add(_restartPoints, getLocation(n)); } else if ("chaotic".equalsIgnoreCase(n.getNodeName())) { _chaoticPoints = ArrayUtils.add(_chaoticPoints, getLocation(n)); } else if ("bannedrace".equalsIgnoreCase(n.getNodeName())) { _bannedRace = Race.getRaceByName(n.getAttributes().getNamedItem("race").getNodeValue()); _bannedRaceRestartId = Integer.parseInt(n.getAttributes().getNamedItem("restartId").getNodeValue()); }/* w w w .j a v a 2 s . c om*/ } }
From source file:gov.nih.nci.cabig.caaers2adeers.track.Tracker.java
private void captureLogDetails(Exchange exchange, IntegrationLog integrationLog) { if (caputureLogDetails) { //Check for soap fault String faultString = XPathBuilder.xpath("//faultstring/text()").evaluate(exchange, String.class); if (!StringUtils.isBlank(faultString)) { integrationLog.setNotes(SOAP_FAULT_STATUS); integrationLog.addIntegrationLogDetail(new IntegrationLogDetail(null, faultString, true)); }/*w w w . j a v a2 s. c o m*/ //check for caaers error message in response String errorString = XPathBuilder.xpath("//error/text()").evaluate(exchange, String.class); if (!StringUtils.isBlank(errorString)) { integrationLog.setNotes(CAAERS_RESPONSE_ERROR); integrationLog.addIntegrationLogDetail(new IntegrationLogDetail(null, errorString, true)); } //check for 'com:entityProcessingOutcomes' NodeList nodes = XPathBuilder.xpath("//com:entityProcessingOutcomes") .namespace("com", "http://schema.integration.caaers.cabig.nci.nih.gov/common").nodeResult() .evaluate(exchange, NodeList.class); if (nodes != null) { for (int i = 0; i < nodes.getLength(); i++) { Node outcome = nodes.item(i); if (StringUtils.equals(outcome.getLocalName(), "entityProcessingOutcome")) { NodeList children = outcome.getChildNodes(); String businessIdentifier = null; String outcomeMsg = null; boolean failed = false; for (int j = 0; j < children.getLength(); j++) { Node child = children.item(j); String childLocalName = child.getLocalName(); if (!StringUtils.isBlank(childLocalName) && childLocalName.equals("businessIdentifier")) { businessIdentifier = child.getFirstChild().getNodeValue(); } else if (!StringUtils.isBlank(childLocalName) && childLocalName.equals("message")) { outcomeMsg = child.getFirstChild() != null ? child.getFirstChild().getNodeValue() : null; } else if (!StringUtils.isBlank(childLocalName) && childLocalName.equals("failed")) { failed = new Boolean( child.getFirstChild() != null ? child.getFirstChild().getNodeValue() : "false"); } } if (businessIdentifier != null) { integrationLog.addIntegrationLogDetail( new IntegrationLogDetail(businessIdentifier, outcomeMsg, failed)); } } } } } }
From source file:com.amalto.core.save.context.BeforeSaving.java
public void save(SaverSession session, DocumentSaverContext context) { // Invoke the beforeSaving MutableDocument updateReportDocument = context.getUpdateReportDocument(); if (updateReportDocument == null) { throw new IllegalStateException("Update report is missing."); //$NON-NLS-1$ }/* www .jav a 2s. co m*/ OutputReport outputreport = session.getSaverSource().invokeBeforeSaving(context, updateReportDocument); if (outputreport != null) { // when a process was found String errorCode; message = outputreport.getMessage(); if (!validateFormat(message)) throw new BeforeSavingFormatException(message); try { Document doc = Util.parse(message); // handle output_report String xpath = "//report/message"; //$NON-NLS-1$ Node errorNode; synchronized (XPATH) { errorNode = (Node) XPATH.evaluate(xpath, doc, XPathConstants.NODE); } errorCode = null; if (errorNode instanceof Element) { Element errorElement = (Element) errorNode; errorCode = errorElement.getAttribute("type"); //$NON-NLS-1$ Node child = errorElement.getFirstChild(); if (child instanceof org.w3c.dom.Text) { message = child.getTextContent(); } else { message = ""; //$NON-NLS-1$ } } if (!"info".equals(errorCode)) { //$NON-NLS-1$ throw new BeforeSavingErrorException(message); } // handle output_item if (outputreport.getItem() != null) { xpath = "//exchange/item"; //$NON-NLS-1$ SkipAttributeDocumentBuilder builder = new SkipAttributeDocumentBuilder( SaverContextFactory.DOCUMENT_BUILDER, false); doc = builder.parse(new InputSource(new StringReader(outputreport.getItem()))); Node item; synchronized (XPATH) { item = (Node) XPATH.evaluate(xpath, doc, XPathConstants.NODE); } if (item != null && item instanceof Element) { Node node = null; Node current = item.getFirstChild(); while (current != null) { if (current instanceof Element) { node = current; break; } current = item.getNextSibling(); } if (node != null) { // set back the modified item by the process DOMDocument document = new DOMDocument(node, context.getUserDocument().getType(), context.getDataCluster(), context.getDataModelName()); context.setUserDocument(document); context.setDatabaseDocument(null); // Redo a set of actions and security checks. // TMDM-4599: Adds UpdateReport phase so a new update report is generated based on latest changes. next = new ID( new GenerateActions(new Security(new UpdateReport(new ApplyActions(next))))); } } } } catch (Exception e) { throw new RuntimeException("Exception occurred during before saving phase.", e); //$NON-NLS-1$ } } next.save(session, context); }
From source file:com.konakart.actions.gateways.AuthorizeNetBaseAction.java
/** * Common code to send a message and receive a response * /*from ww w .jav a2 s .c om*/ * @param kkAppEng * @param msg * @param methodName * @param retAttr * @param custId * @param profileId * @return Returns the value of the attribute called retAttr * @throws Exception */ protected String sendMsgToGateway(KKAppEng kkAppEng, StringBuffer msg, String methodName, String retAttr, int custId, String profileId) throws Exception { // Get a response from the gateway String gatewayResp = getGatewayResponse(msg, methodName); // Now process the XML response String ret = null; if (gatewayResp != null) { try { DocumentBuilderFactory builderFactory = DocumentBuilderFactory.newInstance(); DocumentBuilder builder = builderFactory.newDocumentBuilder(); ByteArrayInputStream bais = new ByteArrayInputStream(gatewayResp.getBytes()); Document doc = builder.parse(bais); boolean val = validateGatewayResponse(kkAppEng, msg, methodName, custId, profileId, doc); if (val) { NodeList list = doc.getElementsByTagName(retAttr); if (list != null && list.getLength() == 1) { Node node = list.item(0); Text datanode = (Text) node.getFirstChild(); ret = datanode.getData(); } if (log.isDebugEnabled()) { log.debug("AuthorizeNet " + methodName + " response data:" + "\n " + retAttr + " = " + ret); } } return ret; } catch (Exception e) { // Problems parsing the XML if (log.isDebugEnabled()) { log.debug("Problems parsing AuthorizeNet " + methodName + " response: " + e.getMessage()); } throw e; } } return retAttr; }
From source file:com.ibm.sbt.test.lib.MockSerializer.java
public HttpResponse replayResponse() throws ClientServicesException { try {/*w w w .ja v a2s. com*/ Node r = getReader().next(); NamedNodeMap nnm = r.getAttributes(); String code = nnm.getNamedItem("statusCode").getTextContent(); String reason = nnm.getNamedItem("statusReason").getTextContent(); Node headers = (Node) DOMUtil.evaluateXPath(r, "./headers").getSingleNode(); Node data = (Node) DOMUtil.evaluateXPath(r, "./data").getSingleNode(); String entity = null; if (data != null) { if (data.getFirstChild() == null) entity = ""; else entity = ((CharacterData) data.getFirstChild()).getData(); } Iterator<Node> hIt = (Iterator<Node>) DOMUtil.evaluateXPath(headers, "./header").getNodeIterator(); ArrayList<Header> allHeaders = new ArrayList<Header>(); while (hIt.hasNext()) { Node headerNode = hIt.next(); String name = ((Node) DOMUtil.evaluateXPath(headerNode, "./name").getSingleNode()).getTextContent(); String value = ((Node) DOMUtil.evaluateXPath(headerNode, "./value").getSingleNode()) .getTextContent(); allHeaders.add(new BasicHeader(name, value)); } return buildResponse(allHeaders.toArray(new Header[allHeaders.size()]), Integer.valueOf(code), reason, entity); } catch (FileNotFoundException e) { StackTraceElement trace = getStackTraceElement(); String fullClassName = trace.getClassName(); String methodName = trace.getMethodName(); String endpointName = getEndpointName(); throw new MockingException(e, "Mocking file missing for test: " + fullClassName + "." + methodName + "/" + endpointName); } catch (Exception e) { throw new MockingException(e, "Corrupted Mocking file, please regenerate: " + getPath()); } }