List of usage examples for org.jfree.chart.plot XYPlot setDomainGridlinePaint
public void setDomainGridlinePaint(Paint paint)
From source file:ucar.unidata.idv.control.chart.PlotWrapper.java
/** * Utility to init xy plots/*w ww . j a v a 2s . co m*/ * * @param plot the plotx */ protected void initXYPlot(XYPlot plot) { plot.setBackgroundPaint(dataAreaColor); // plot.setAxisOffset(new RectangleInsets(6.0, 3.0, 3.0, 3.0)); plot.setDomainCrosshairVisible(true); plot.setRangeCrosshairVisible(true); plot.setDomainGridlinesVisible(domainLineState.getVisible()); plot.setRangeGridlinesVisible(rangeLineState.getVisible()); plot.setDomainGridlinePaint(domainLineState.getColor()); plot.setRangeGridlinePaint(rangeLineState.getColor()); plot.setDomainGridlineStroke(domainLineState.getStroke()); plot.setRangeGridlineStroke(rangeLineState.getStroke()); }
From source file:de.fau.amos.ChartRenderer.java
/** * Creates Chart with Bars (JFreeChart object) from TimeSeriesCollection. Is used when granularity is set to days, months or years. * Adjusts display of the chart, not the values itself. * // w ww. ja v a 2s . com * @param collection TimeSeriesCollection that should be used as basis of chart. * @param timeGranularity Selected granularity. Value is similar to granularity contained in TimeSeriesCollection "collection". * @param time first element of time that is displayed. Is used for caption text and axis text. * @param unit Unit of displayed values (kWh or kWh/TNF). * @return Returns finished JFreeChart object. */ private JFreeChart createTimeBarChart(TimeSeriesCollection collection, String timeGranularity, String time, String unit) { String xAxisLabel = null; // Modification of X-Axis Label (depending on the granularity) int month; String monthString = null; switch (timeGranularity) { //for Case "0" see method "createTimeLineChart" case "1": month = Integer.parseInt(time.substring(5, 7)); monthString = new DateFormatSymbols(Locale.US).getMonths()[month - 1]; xAxisLabel = "" + monthString + " " + time.substring(0, 4); break; case "2": xAxisLabel = time.substring(0, 4); break; case "3": xAxisLabel = "Years"; break; default: xAxisLabel = "Timespan"; } JFreeChart barChart = ChartFactory.createXYBarChart("Bar Chart", // title xAxisLabel, // x-axis label true, // date axis? // "Energy Consumption "+("1".equals(unit)?"[kWh]":("2".equals(unit)?"[kWh/TNF]":("3".equals(unit)?"[TNF]":""))), // y-axis label ("1".equals(unit) ? "Energy Consumption [kWh]" : ("2".equals(unit) ? "Energy Consumption [kWh/TNF]" : ("3".equals(unit) ? "Produced Pieces [TNF]" : ""))), collection, // data PlotOrientation.VERTICAL, // orientation true, // create legend? true, // generate tooltips? false // generate URLs? ); //graphical modifications for BarChart barChart.setBackgroundPaint(Color.white); XYPlot plot = barChart.getXYPlot(); plot.setBackgroundPaint(Color.white); plot.setDomainGridlinePaint(Color.white); plot.setRangeGridlinePaint(Color.white); plot.setAxisOffset(new RectangleInsets(0, 0, 0, 0)); //Axis modification: Set Axis X-Value directly below the bars DateAxis dateAxis = (DateAxis) plot.getDomainAxis(); dateAxis.setTickMarkPosition(DateTickMarkPosition.MIDDLE); //Axis modification: Remove Values from x-Axis that belong to former/later time element (Month/Day) dateAxis.setLowerMargin(0.01); dateAxis.setUpperMargin(0.01); //Axis modification: Axis values (depending on timeGranularity) if (timeGranularity.equals("1")) { dateAxis.setTickUnit( new DateTickUnit(DateTickUnitType.DAY, 2, new SimpleDateFormat(" dd. ", Locale.US))); } if (timeGranularity.equals("2")) { dateAxis.setTickUnit( new DateTickUnit(DateTickUnitType.MONTH, 1, new SimpleDateFormat(" MMM ", Locale.US))); } if (timeGranularity.equals("3")) { dateAxis.setTickUnit( new DateTickUnit(DateTickUnitType.YEAR, 1, new SimpleDateFormat(" yyyy ", Locale.US))); } ClusteredXYBarRenderer clusteredxybarrenderer = new ClusteredXYBarRenderer(0.25, false); clusteredxybarrenderer.setShadowVisible(false); clusteredxybarrenderer.setBarPainter(new StandardXYBarPainter()); plot.setRenderer(clusteredxybarrenderer); return barChart; }
From source file:org.trade.ui.chart.CandlestickChart.java
/** * Method createChart./*w w w. j a va 2 s . c o m*/ * * @param strategyData * StrategyData * @param title * String * @return JFreeChart */ private JFreeChart createChart(StrategyData strategyData, String title, Tradingday tradingday) { DateAxis dateAxis = new DateAxis("Date"); dateAxis.setVerticalTickLabels(true); dateAxis.setDateFormatOverride(new SimpleDateFormat("dd/MM hh:mm")); dateAxis.setTickMarkPosition(DateTickMarkPosition.START); NumberAxis priceAxis = new NumberAxis("Price"); priceAxis.setAutoRange(true); priceAxis.setAutoRangeIncludesZero(false); XYPlot pricePlot = new XYPlot(strategyData.getCandleDataset(), dateAxis, priceAxis, strategyData.getCandleDataset().getRenderer()); pricePlot.setOrientation(PlotOrientation.VERTICAL); pricePlot.setDomainPannable(true); pricePlot.setRangePannable(true); pricePlot.setDomainCrosshairVisible(true); pricePlot.setDomainCrosshairLockedOnData(true); pricePlot.setRangeCrosshairVisible(true); pricePlot.setRangeCrosshairLockedOnData(true); pricePlot.setRangeGridlinePaint(new Color(204, 204, 204)); pricePlot.setDomainGridlinePaint(new Color(204, 204, 204)); pricePlot.setBackgroundPaint(Color.white); /* * Calculate the number of 15min segments in this trading day. i.e. * 6.5hrs/15min = 26 and there are a total of 96 = one day */ int segments15min = (int) (tradingday.getClose().getTime() - tradingday.getOpen().getTime()) / (1000 * 60 * 15); SegmentedTimeline segmentedTimeline = new SegmentedTimeline(SegmentedTimeline.FIFTEEN_MINUTE_SEGMENT_SIZE, segments15min, (96 - segments15min)); Date startDate = tradingday.getOpen(); Date endDate = tradingday.getClose(); if (!strategyData.getCandleDataset().getSeries(0).isEmpty()) { startDate = ((CandleItem) strategyData.getCandleDataset().getSeries(0).getDataItem(0)).getPeriod() .getStart(); startDate = TradingCalendar.getSpecificTime(tradingday.getOpen(), startDate); endDate = ((CandleItem) strategyData.getCandleDataset().getSeries(0) .getDataItem(strategyData.getCandleDataset().getSeries(0).getItemCount() - 1)).getPeriod() .getStart(); endDate = TradingCalendar.getSpecificTime(tradingday.getClose(), endDate); } segmentedTimeline.setStartTime(startDate.getTime()); segmentedTimeline.addExceptions(getNonTradingPeriods(startDate, endDate, tradingday.getOpen(), tradingday.getClose(), segmentedTimeline)); dateAxis.setTimeline(segmentedTimeline); // Build Combined Plot CombinedDomainXYPlot mainPlot = new CombinedDomainXYPlot(dateAxis); mainPlot.add(pricePlot, 4); int axixIndex = 0; int datasetIndex = 0; /* * Change the List of indicators so that the candle dataset is the first * one in the list. The main chart must be plotted first. */ List<IndicatorDataset> indicators = new ArrayList<IndicatorDataset>(0); for (IndicatorDataset item : strategyData.getIndicators()) { if (IndicatorSeries.CandleSeries.equals(item.getType(0))) { indicators.add(item); } } for (IndicatorDataset item : strategyData.getIndicators()) { if (!IndicatorSeries.CandleSeries.equals(item.getType(0))) { indicators.add(item); } } for (int i = 0; i < indicators.size(); i++) { IndicatorDataset indicator = indicators.get(i); if (indicator.getDisplaySeries(0)) { if (indicator.getSubChart(0)) { String axisName = "Price"; if (IndicatorSeries.CandleSeries.equals(indicator.getType(0))) { axisName = ((CandleSeries) indicator.getSeries(0)).getSymbol(); } else { org.trade.dictionary.valuetype.IndicatorSeries code = org.trade.dictionary.valuetype.IndicatorSeries .newInstance(indicator.getType(0)); axisName = code.getDisplayName(); } NumberAxis subPlotAxis = new NumberAxis(axisName); subPlotAxis.setAutoRange(true); subPlotAxis.setAutoRangeIncludesZero(false); XYPlot subPlot = new XYPlot((XYDataset) indicator, dateAxis, subPlotAxis, indicator.getRenderer()); subPlot.setOrientation(PlotOrientation.VERTICAL); subPlot.setDomainPannable(true); subPlot.setRangePannable(true); subPlot.setDomainCrosshairVisible(true); subPlot.setDomainCrosshairLockedOnData(true); subPlot.setRangeCrosshairVisible(true); subPlot.setRangeCrosshairLockedOnData(true); subPlot.setRangeGridlinePaint(new Color(204, 204, 204)); subPlot.setDomainGridlinePaint(new Color(204, 204, 204)); subPlot.setBackgroundPaint(Color.white); XYItemRenderer renderer = subPlot.getRendererForDataset((XYDataset) indicator); for (int seriesIndex = 0; seriesIndex < ((XYDataset) indicator) .getSeriesCount(); seriesIndex++) { renderer.setSeriesPaint(seriesIndex, indicator.getSeriesColor(seriesIndex)); } mainPlot.add(subPlot, 1); } else { datasetIndex++; pricePlot.setDataset(datasetIndex, (XYDataset) indicator); if (IndicatorSeries.CandleSeries.equals(indicator.getType(0))) { // add secondary axis axixIndex++; final NumberAxis axis2 = new NumberAxis( ((CandleSeries) indicator.getSeries(0)).getSymbol()); axis2.setAutoRange(true); axis2.setAutoRangeIncludesZero(false); pricePlot.setRangeAxis(datasetIndex, axis2); pricePlot.setRangeAxisLocation(i + 1, AxisLocation.BOTTOM_OR_RIGHT); pricePlot.mapDatasetToRangeAxis(datasetIndex, axixIndex); pricePlot.setRenderer(datasetIndex, new StandardXYItemRenderer()); } else { pricePlot.setRenderer(datasetIndex, indicator.getRenderer()); } XYItemRenderer renderer = pricePlot.getRendererForDataset((XYDataset) indicator); for (int seriesIndex = 0; seriesIndex < ((XYDataset) indicator) .getSeriesCount(); seriesIndex++) { renderer.setSeriesPaint(seriesIndex, indicator.getSeriesColor(seriesIndex)); } } } } JFreeChart jfreechart = new JFreeChart(title, null, mainPlot, true); jfreechart.setAntiAlias(false); return jfreechart; }
From source file:org.gwaspi.gui.reports.SampleQAHetzygPlotZoom.java
private JFreeChart createChart(XYDataset dataset) { JFreeChart chart = ChartFactory.createScatterPlot("Heterozygosity vs. Missing Ratio", "Heterozygosity Ratio", "Missing Ratio", dataset, PlotOrientation.VERTICAL, true, false, false); XYPlot plot = (XYPlot) chart.getPlot(); plot.setNoDataMessage("NO DATA"); plot.setDomainZeroBaselineVisible(true); plot.setRangeZeroBaselineVisible(true); // CHART BACKGROUD COLOR chart.setBackgroundPaint(Color.getHSBColor(0.1f, 0.1f, 1.0f)); // Hue, saturation, brightness plot.setBackgroundPaint(PLOT_MANHATTAN_BACKGROUND); // Hue, saturation, brightness 9 // GRIDLINES// w ww. ja v a2s . co m plot.setDomainGridlineStroke(new BasicStroke(0.0f)); plot.setDomainMinorGridlineStroke(new BasicStroke(0.0f)); plot.setDomainGridlinePaint(PLOT_MANHATTAN_BACKGROUND.darker().darker()); // Hue, saturation, brightness 7 plot.setDomainMinorGridlinePaint(PLOT_MANHATTAN_BACKGROUND); // Hue, saturation, brightness 9 plot.setRangeGridlineStroke(new BasicStroke(0.0f)); plot.setRangeMinorGridlineStroke(new BasicStroke(0.0f)); plot.setRangeGridlinePaint(PLOT_MANHATTAN_BACKGROUND.darker().darker()); // Hue, saturation, brightness 7 plot.setRangeMinorGridlinePaint(PLOT_MANHATTAN_BACKGROUND.darker()); // Hue, saturation, brightness 8 plot.setDomainMinorGridlinesVisible(true); plot.setRangeMinorGridlinesVisible(true); // DOTS RENDERER XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setSeriesPaint(0, PLOT_MANHATTAN_DOTS); // renderer.setSeriesOutlinePaint(0, Color.DARK_GRAY); // renderer.setUseOutlinePaint(true); // Set dot shape of the currently appended Series renderer.setSeriesShape(0, new Rectangle2D.Double(-1, -1, 2, 2)); renderer.setSeriesVisibleInLegend(0, false); // AXIS double maxHetzy = 0.005; for (int i = 0; i < dataset.getItemCount(0); i++) { if (maxHetzy < dataset.getXValue(0, i)) { maxHetzy = dataset.getXValue(0, i); } } NumberAxis hetzyAxis = (NumberAxis) plot.getDomainAxis(); hetzyAxis.setAutoRangeIncludesZero(true); hetzyAxis.setAxisLineVisible(true); hetzyAxis.setTickLabelsVisible(true); hetzyAxis.setTickMarksVisible(true); hetzyAxis.setRange(0, maxHetzy * 1.1); double maxMissrat = 0.005; for (int i = 0; i < dataset.getItemCount(0); i++) { if (maxMissrat < dataset.getYValue(0, i)) { maxMissrat = dataset.getYValue(0, i); } } NumberAxis missratAxis = (NumberAxis) plot.getRangeAxis(); missratAxis.setAutoRangeIncludesZero(true); missratAxis.setAxisLineVisible(true); missratAxis.setTickLabelsVisible(true); missratAxis.setTickMarksVisible(true); missratAxis.setRange(0, maxMissrat * 1.1); // Add significance Threshold to subplot final Marker missingThresholdLine = new ValueMarker(missingThreshold); missingThresholdLine.setPaint(Color.blue); final Marker hetzyThresholdLine = new ValueMarker(hetzyThreshold); hetzyThresholdLine.setPaint(Color.blue); // Add legend to hetzyThreshold hetzyThresholdLine.setLabel("hetzyg. threshold = " + hetzyThreshold); missingThresholdLine.setLabel("missing. threshold = " + missingThreshold); hetzyThresholdLine.setLabelAnchor(RectangleAnchor.TOP_LEFT); hetzyThresholdLine.setLabelTextAnchor(TextAnchor.TOP_RIGHT); missingThresholdLine.setLabelAnchor(RectangleAnchor.BOTTOM_LEFT); missingThresholdLine.setLabelTextAnchor(TextAnchor.TOP_LEFT); plot.addRangeMarker(missingThresholdLine); // THIS FOR MISSING RATIO plot.addDomainMarker(hetzyThresholdLine); // THIS FOR HETZY RATIO // Marker label if below hetzyThreshold XYItemRenderer lblRenderer = plot.getRenderer(); // THRESHOLD AND SELECTED LABEL GENERATOR MySeriesItemLabelGenerator lblGenerator = new MySeriesItemLabelGenerator(hetzyThreshold, missingThreshold); lblRenderer.setSeriesItemLabelGenerator(0, lblGenerator); lblRenderer.setSeriesItemLabelFont(0, new Font("SansSerif", Font.PLAIN, 10)); lblRenderer.setSeriesPositiveItemLabelPosition(0, new ItemLabelPosition(ItemLabelAnchor.CENTER, TextAnchor.BOTTOM_LEFT, TextAnchor.BOTTOM_LEFT, 2 * Math.PI)); // TOOLTIP GENERATOR MyXYToolTipGenerator tooltipGenerator = new MyXYToolTipGenerator(); lblRenderer.setBaseToolTipGenerator(tooltipGenerator); lblRenderer.setSeriesItemLabelsVisible(0, true); return chart; }
From source file:financepro.XYLineChartExample.java
License:asdf
private JPanel createChartPanel() { // creates a line chart object // returns the chart panel String chartTitle = "Various Financial Ratios"; String xAxisLabel = "Years"; String yAxisLabel = "Ratio Values"; XYDataset dataset = createDataset(); JFreeChart chart = ChartFactory.createXYLineChart(chartTitle, xAxisLabel, yAxisLabel, dataset); XYPlot plot = chart.getXYPlot(); XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(); plot.setRenderer(renderer);/*from w ww .j a v a 2s. c o m*/ renderer.setSeriesPaint(0, Color.RED); renderer.setSeriesPaint(1, Color.GREEN); renderer.setSeriesPaint(2, Color.YELLOW); renderer.setSeriesPaint(3, Color.CYAN); renderer.setSeriesPaint(4, Color.BLACK); renderer.setSeriesStroke(0, new BasicStroke(4.0f)); renderer.setSeriesStroke(1, new BasicStroke(4.0f)); renderer.setSeriesStroke(2, new BasicStroke(4.0f)); renderer.setSeriesStroke(3, new BasicStroke(4.0f)); renderer.setSeriesStroke(4, new BasicStroke(4.0f)); plot.setRenderer(renderer); plot.setOutlinePaint(Color.BLUE); plot.setOutlineStroke(new BasicStroke(4.0f)); plot.setBackgroundPaint(Color.DARK_GRAY); plot.setRangeGridlinesVisible(true); plot.setRangeGridlinePaint(Color.BLACK); plot.setDomainGridlinesVisible(true); plot.setDomainGridlinePaint(Color.BLACK); return new ChartPanel(chart); }
From source file:MSUmpire.DIA.TargetMatchScoring.java
public void MixtureModeling() throws IOException { if (libTargetMatches.isEmpty()) { return;/*ww w . j a va2 s . c om*/ } int IDNo = 0; int decoyNo = 0; int modelNo = 0; double IDmean = 0d; double Decoymean = 0d; for (UmpireSpecLibMatch match : libIDMatches) { if (match.BestHit != null) { IDNo++; IDmean += match.BestHit.UmpireScore; } } decoyNo = decoyModelingList.size(); for (PeakGroupScore peakGroupScore : decoyModelingList) { Decoymean += peakGroupScore.UmpireScore; } for (UmpireSpecLibMatch match : libTargetMatches) { //modelNo+= match.TargetHits.size(); if (match.BestMS1Hit != null) { modelNo++; } if (match.BestMS2Hit != null) { modelNo++; } } Decoymean /= decoyNo; IDmean /= IDNo; PVector[] points = new PVector[modelNo]; PVector[] centroids = new PVector[2]; int idx = 0; for (UmpireSpecLibMatch match : libTargetMatches) { if (match.BestMS1Hit != null) { points[idx] = new PVector(1); points[idx].array[0] = match.BestMS1Hit.UmpireScore; idx++; } if (match.BestMS2Hit != null) { points[idx] = new PVector(1); points[idx].array[0] = match.BestMS2Hit.UmpireScore; idx++; } // for(PeakGroupScore peakGroupScore : match.TargetHits){ // points[idx] = new PVector(1); // points[idx].array[0] = match.BestMS2Hit.UmpireScore; // idx++; // } } MixtureModel mmc; centroids[0] = new PVector(1); centroids[0].array[0] = Decoymean; centroids[1] = new PVector(1); centroids[1].array[0] = IDmean; Vector<PVector>[] clusters = KMeans.run(points, 2, centroids); MixtureModel mm = ExpectationMaximization1D.initialize(clusters); mmc = ExpectationMaximization1D.run(points, mm); DecimalFormat df = new DecimalFormat("#.####"); Logger.getRootLogger() .debug("----------------------------------------------------------------------------------------"); Logger.getRootLogger().debug("No. of modeling points=" + modelNo); Logger.getRootLogger().debug("ID hits mean=" + df.format(IDmean)); Logger.getRootLogger().debug("Decoy hits mean=" + df.format(Decoymean)); //System.out.print("T-test: p-value=" + df.format(model.ttest.pValue).toString() + "\n"); Logger.getRootLogger() .debug("Incorrect hits model mean=" + df.format(((PVector) mmc.param[0]).array[0]) + " variance=" + df.format(((PVector) mmc.param[0]).array[1]) + " weight=" + df.format(mmc.weight[0])); Logger.getRootLogger() .debug("Correct hits model mean=" + df.format(((PVector) mmc.param[1]).array[0]) + " variance=" + df.format(((PVector) mmc.param[1]).array[1]) + " weight=" + df.format(mmc.weight[1])); if (((PVector) mmc.param[0]).array[0] > ((PVector) mmc.param[1]).array[0]) { return; } float max = (float) (((PVector) mmc.param[1]).array[0] + 4 * Math.sqrt(((PVector) mmc.param[1]).array[1])); float min = (float) (((PVector) mmc.param[0]).array[0] - 4 * Math.sqrt(((PVector) mmc.param[0]).array[1])); IDNo = 0; decoyNo = 0; modelNo = 0; for (PeakGroupScore peakGroupScore : decoyModelingList) { if (peakGroupScore.UmpireScore > min && peakGroupScore.UmpireScore < max) { decoyNo++; } } for (UmpireSpecLibMatch match : libIDMatches) { if (match.BestHit != null && match.BestHit.UmpireScore > min && match.BestHit.UmpireScore < max) { IDNo++; } } for (UmpireSpecLibMatch match : libTargetMatches) { //targetNo += match.TargetHits.size(); //decoyNo += match.DecoyHits.size(); if (match.BestMS1Hit != null && match.BestMS1Hit.UmpireScore > min && match.BestMS1Hit.UmpireScore < max) { modelNo++; } if (match.BestMS2Hit != null && match.BestMS2Hit.UmpireScore > min && match.BestMS2Hit.UmpireScore < max) { modelNo++; } //modelNo += match.TargetHits.size(); } double[] IDObs = new double[IDNo]; double[] DecoyObs = new double[decoyNo]; double[] ModelObs = new double[modelNo]; idx = 0; int didx = 0; int midx = 0; for (UmpireSpecLibMatch match : libIDMatches) { if (match.BestHit != null && match.BestHit.UmpireScore > min && match.BestHit.UmpireScore < max) { IDObs[idx++] = match.BestHit.UmpireScore; } } for (PeakGroupScore peakGroupScore : decoyModelingList) { if (peakGroupScore.UmpireScore > min && peakGroupScore.UmpireScore < max) { DecoyObs[didx++] = peakGroupScore.UmpireScore; } } for (UmpireSpecLibMatch match : libTargetMatches) { // for(PeakGroupScore peak : match.TargetHits){ // ModelObs[midx++]=peak.UmpireScore; // } if (match.BestMS1Hit != null && match.BestMS1Hit.UmpireScore > min && match.BestMS1Hit.UmpireScore < max) { ModelObs[midx++] = match.BestMS1Hit.UmpireScore; } if (match.BestMS2Hit != null && match.BestMS2Hit.UmpireScore > min && match.BestMS2Hit.UmpireScore < max) { ModelObs[midx++] = match.BestMS2Hit.UmpireScore; } } String pngfile = FilenameUtils.getFullPath(Filename) + "/" + FilenameUtils.getBaseName(Filename) + "_" + LibID + "_LibMatchModel.png"; XYSeries model1 = new XYSeries("Incorrect matches"); XYSeries model2 = new XYSeries("Correct matches"); XYSeries model3 = new XYSeries("All target hits"); String modelfile = FilenameUtils.getFullPath(pngfile) + "/" + FilenameUtils.getBaseName(pngfile) + "_ModelPoints.txt"; FileWriter writer = new FileWriter(modelfile); writer.write("UScore\tModel\tCorrect\tDecoy\n"); int NoPoints = 1000; double[] model_kde_x = new double[NoPoints]; float intv = (max - min) / NoPoints; PVector point = new PVector(2); for (int i = 0; i < NoPoints; i++) { point.array[0] = max - i * intv; model_kde_x[i] = point.array[0]; point.array[1] = mmc.EF.density(point, mmc.param[0]) * mmc.weight[0]; model1.add(point.array[0], point.array[1]); point.array[1] = mmc.EF.density(point, mmc.param[1]) * mmc.weight[1]; model2.add(point.array[0], point.array[1]); } KernelDensityEstimator kde = new KernelDensityEstimator(); kde.SetData(ModelObs); double[] model_kde_y = kde.Density(model_kde_x); for (int i = 0; i < NoPoints; i++) { if (model_kde_x[i] > min && model_kde_x[i] < max) { point.array[0] = max - i * intv; model_kde_x[i] = point.array[0]; model3.add(model_kde_x[i], model_kde_y[i]); writer.write(point.array[0] + "\t" + mmc.EF.density(point, mmc.param[0]) * mmc.weight[0] + "\t" + mmc.EF.density(point, mmc.param[1]) * mmc.weight[1] + "\t" + model_kde_y[i] + "\n"); } } writer.close(); MixtureModelProb = new float[NoPoints + 1][3]; float positiveaccu = 0f; float negativeaccu = 0f; MixtureModelProb[0][0] = (float) model2.getMaxX() + Float.MIN_VALUE; MixtureModelProb[0][1] = 1f; MixtureModelProb[0][2] = 1f; for (int i = 1; i < NoPoints + 1; i++) { float positiveNumber = model2.getY(NoPoints - i).floatValue(); float negativeNumber = model1.getY(NoPoints - i).floatValue(); MixtureModelProb[i][0] = model2.getX(NoPoints - i).floatValue(); positiveaccu += positiveNumber; negativeaccu += negativeNumber; MixtureModelProb[i][2] = positiveNumber / (negativeNumber + positiveNumber); MixtureModelProb[i][1] = positiveaccu / (negativeaccu + positiveaccu); } XYSeriesCollection dataset = new XYSeriesCollection(); dataset.addSeries(model1); dataset.addSeries(model2); dataset.addSeries(model3); HistogramDataset histogramDataset = new HistogramDataset(); histogramDataset.setType(HistogramType.SCALE_AREA_TO_1); histogramDataset.addSeries("ID hits", IDObs, 100); histogramDataset.addSeries("Decoy hits", DecoyObs, 100); //histogramDataset.addSeries("Model hits", ModelObs, 100); JFreeChart chart = ChartFactory.createHistogram(FilenameUtils.getBaseName(pngfile), "Score", "Hits", histogramDataset, PlotOrientation.VERTICAL, true, false, false); XYPlot plot = chart.getXYPlot(); NumberAxis domain = (NumberAxis) plot.getDomainAxis(); domain.setRange(min, max); plot.setBackgroundPaint(Color.white); plot.setDomainGridlinePaint(Color.white); plot.setRangeGridlinePaint(Color.white); plot.setForegroundAlpha(0.8f); chart.setBackgroundPaint(Color.white); XYLineAndShapeRenderer render = new XYLineAndShapeRenderer(); // render.setSeriesPaint(0, Color.DARK_GRAY); // render.setSeriesPaint(1, Color.DARK_GRAY); // render.setSeriesPaint(2, Color.GREEN); // render.setSeriesShape(0, new Ellipse2D.Double(0, 0, 2, 2)); // render.setSeriesShape(1, new Ellipse2D.Double(0, 0, 2, 2)); // render.setSeriesShape(2, new Ellipse2D.Double(0, 0, 2.5f, 2.5f)); // render.setSeriesStroke(1, new BasicStroke(1.0f)); // render.setSeriesStroke(0, new BasicStroke(1.0f)); // render.setSeriesStroke(2, new BasicStroke(2.0f)); plot.setDataset(1, dataset); plot.setRenderer(1, render); plot.setDatasetRenderingOrder(DatasetRenderingOrder.FORWARD); try { ChartUtilities.saveChartAsPNG(new File(pngfile), chart, 1000, 600); } catch (IOException e) { } }
From source file:org.lmn.fc.frameworks.starbase.plugins.observatory.ui.tabs.charts.GpsScatterPlotUIComponent.java
/*********************************************************************************************** * Customise the XYPlot of a new chart, e.g. for fixed range axes. * Remember that a GPS Scatter Plot has no ChannelSelector. * * @param datasettype/*from w w w . ja va 2s . co m*/ * @param primarydataset * @param secondarydatasets * @param updatetype * @param displaylimit * @param channelselector * @param debug * * @return JFreeChart */ public JFreeChart createCustomisedChart(final DatasetType datasettype, final XYDataset primarydataset, final List<XYDataset> secondarydatasets, final DataUpdateType updatetype, final int displaylimit, final ChannelSelectorUIComponentInterface channelselector, final boolean debug) { final String SOURCE = "GpsScatterPlotUIComponent.createCustomisedChart() "; final JFreeChart jFreeChart; final XYPlot plot; final Stroke strokeCrosshair; final XYDotRenderer renderer; final ValueAxis axisRange; final NumberAxis axisDomain; // See ChartHelper for other calls to ChartFactory // Note that no ChannelSector means no way to control the legend, so turn it off jFreeChart = ChartFactory.createScatterPlot(MSG_WAITING_FOR_DATA, MSG_WAITING_FOR_DATA, MSG_WAITING_FOR_DATA, primarydataset, PlotOrientation.VERTICAL, false, //channelselector.hasLegend(), true, false); jFreeChart.setBackgroundPaint(UIComponentPlugin.DEFAULT_COLOUR_CANVAS.getColor()); // Experimental chart configuration jFreeChart.getTitle().setFont(UIComponentPlugin.DEFAULT_FONT.getFont().deriveFont(20.0f)); plot = (XYPlot) jFreeChart.getPlot(); plot.setBackgroundPaint(ChartHelper.COLOR_PLOT); plot.setDomainGridlinePaint(ChartHelper.COLOR_GRIDLINES); plot.setRangeGridlinePaint(ChartHelper.COLOR_GRIDLINES); plot.setAxisOffset(ChartHelper.PLOT_RECTANGLE_INSETS); plot.setDomainZeroBaselineVisible(true); plot.setRangeZeroBaselineVisible(true); plot.setDomainCrosshairVisible(true); plot.setDomainCrosshairLockedOnData(false); plot.setRangeCrosshairVisible(true); plot.setRangeCrosshairLockedOnData(true); // Make the Crosshair more visible by changing the width from the default strokeCrosshair = new BasicStroke(2.0f, // The width of this BasicStroke BasicStroke.CAP_BUTT, // The decoration of the ends of a BasicStroke BasicStroke.JOIN_BEVEL, // The decoration applied where path segments meet 0.0f, // The limit to trim the miter join new float[] { 2.0f, 2.0f }, // The array representing the dashing pattern 0.0f); // The offset to start the dashing pattern plot.setDomainCrosshairStroke(strokeCrosshair); plot.setRangeCrosshairStroke(strokeCrosshair); renderer = new XYDotRenderer(); renderer.setDotWidth(2); renderer.setDotHeight(2); plot.setRenderer(renderer); axisDomain = (NumberAxis) plot.getDomainAxis(); axisRange = plot.getRangeAxis(); // Remember that a GPS Scatter Plot has no ChannelSelector if (canAutorange()) { // The fix could be anywhere... axisDomain.setAutoRangeIncludesZero(false); axisDomain.setAutoRange(true); axisRange.setAutoRange(true); } else { // Allow range to full global extents! axisDomain.setRange(getLinearFixedMinY(), getLinearFixedMaxY()); axisRange.setRange(-90.0, 90.0); } return (jFreeChart); }
From source file:IHM.compargraph.java
/** * * @param title// w w w .j a v a 2 s . c o m * @param c1 * @param c2 * @param comp * */ public compargraph(String title, ArrayList<ReleveMeteo> c1, ArrayList<ReleveMeteo> c2, String comp) { super(title); t1 = c1; t2 = c2; c = comp; // jp = new JInternalFrame("courbes"); JFreeChart chart = createChart(createDataset()); ChartPanel panel = new ChartPanel(chart); panel.setPreferredSize(new Dimension(500, 300)); setContentPane(panel); // jp.add(panel, BorderLayout.EAST); // jp.setVisible(true); panel.setVisible(true); XYPlot plot = chart.getXYPlot(); XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(); plot.setRenderer(renderer); renderer.setSeriesPaint(0, Color.RED); renderer.setSeriesPaint(1, Color.GREEN); renderer.setSeriesPaint(2, Color.YELLOW); // sets thickness for series (using strokes) renderer.setSeriesStroke(0, new BasicStroke(4.0f)); renderer.setSeriesStroke(1, new BasicStroke(3.0f)); renderer.setSeriesStroke(2, new BasicStroke(2.0f)); plot.setRenderer(renderer); plot.setOutlinePaint(Color.BLUE); plot.setOutlineStroke(new BasicStroke(2.0f)); plot.setBackgroundPaint(Color.DARK_GRAY); plot.setRangeGridlinesVisible(true); plot.setRangeGridlinePaint(Color.BLACK); plot.setDomainGridlinesVisible(true); plot.setDomainGridlinePaint(Color.BLACK); }
From source file:org.locationtech.udig.processingtoolbox.tools.MoranScatterPlotDialog.java
private void updateChart(SimpleFeatureCollection features, String propertyName, String morani) { // 1. Create a single plot containing both the scatter and line XYPlot plot = new XYPlot(); plot.setOrientation(PlotOrientation.VERTICAL); plot.setBackgroundPaint(java.awt.Color.WHITE); plot.setDomainPannable(false);// www .j a va 2s. c om plot.setRangePannable(false); plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD); plot.setDomainCrosshairVisible(false); plot.setRangeCrosshairVisible(false); plot.setDomainCrosshairLockedOnData(true); plot.setRangeCrosshairLockedOnData(true); plot.setDomainCrosshairPaint(java.awt.Color.CYAN); plot.setRangeCrosshairPaint(java.awt.Color.CYAN); plot.setDomainGridlinePaint(java.awt.Color.LIGHT_GRAY); plot.setRangeGridlinePaint(java.awt.Color.LIGHT_GRAY); // 2. Setup Scatter plot // Create the scatter data, renderer, and axis int fontStyle = java.awt.Font.BOLD; FontData fontData = getShell().getDisplay().getSystemFont().getFontData()[0]; NumberAxis xPlotAxis = new NumberAxis(propertyName); // ZScore xPlotAxis.setLabelFont(new Font(fontData.getName(), fontStyle, 12)); xPlotAxis.setTickLabelFont(new Font(fontData.getName(), fontStyle, 10)); NumberAxis yPlotAxis = new NumberAxis("lagged " + propertyName); //$NON-NLS-1$ yPlotAxis.setLabelFont(new Font(fontData.getName(), fontStyle, 12)); yPlotAxis.setTickLabelFont(new Font(fontData.getName(), fontStyle, 10)); XYToolTipGenerator plotToolTip = new StandardXYToolTipGenerator(); XYItemRenderer plotRenderer = new XYLineAndShapeRenderer(false, true); // Shapes only plotRenderer.setSeriesShape(0, new Ellipse2D.Double(0, 0, 3, 3)); plotRenderer.setSeriesPaint(0, java.awt.Color.BLUE); // dot plotRenderer.setBaseToolTipGenerator(plotToolTip); // Set the scatter data, renderer, and axis into plot plot.setDataset(0, getScatterPlotData(features)); plot.setRenderer(0, plotRenderer); plot.setDomainAxis(0, xPlotAxis); plot.setRangeAxis(0, yPlotAxis); // Map the scatter to the first Domain and first Range plot.mapDatasetToDomainAxis(0, 0); plot.mapDatasetToRangeAxis(0, 0); // 3. Setup line // Create the line data, renderer, and axis XYItemRenderer lineRenderer = new XYLineAndShapeRenderer(true, false); // Lines only lineRenderer.setSeriesPaint(0, java.awt.Color.GRAY); // dot // Set the line data, renderer, and axis into plot NumberAxis xLineAxis = new NumberAxis(EMPTY); xLineAxis.setTickMarksVisible(false); xLineAxis.setTickLabelsVisible(false); NumberAxis yLineAxis = new NumberAxis(EMPTY); yLineAxis.setTickMarksVisible(false); yLineAxis.setTickLabelsVisible(false); plot.setDataset(1, getLinePlotData(crossCenter)); plot.setRenderer(1, lineRenderer); plot.setDomainAxis(1, xLineAxis); plot.setRangeAxis(1, yLineAxis); // Map the line to the second Domain and second Range plot.mapDatasetToDomainAxis(1, 0); plot.mapDatasetToRangeAxis(1, 0); // 4. Setup Selection NumberAxis xSelectionAxis = new NumberAxis(EMPTY); xSelectionAxis.setTickMarksVisible(false); xSelectionAxis.setTickLabelsVisible(false); NumberAxis ySelectionAxis = new NumberAxis(EMPTY); ySelectionAxis.setTickMarksVisible(false); ySelectionAxis.setTickLabelsVisible(false); XYItemRenderer selectionRenderer = new XYLineAndShapeRenderer(false, true); // Shapes only selectionRenderer.setSeriesShape(0, new Ellipse2D.Double(0, 0, 6, 6)); selectionRenderer.setSeriesPaint(0, java.awt.Color.RED); // dot plot.setDataset(2, new XYSeriesCollection(new XYSeries(EMPTY))); plot.setRenderer(2, selectionRenderer); plot.setDomainAxis(2, xSelectionAxis); plot.setRangeAxis(2, ySelectionAxis); // Map the scatter to the second Domain and second Range plot.mapDatasetToDomainAxis(2, 0); plot.mapDatasetToRangeAxis(2, 0); // 5. Finally, Create the chart with the plot and a legend String title = "Moran's I = " + morani; //$NON-NLS-1$ java.awt.Font titleFont = new Font(fontData.getName(), fontStyle, 20); JFreeChart chart = new JFreeChart(title, titleFont, plot, false); chart.setBackgroundPaint(java.awt.Color.WHITE); chart.setBorderVisible(false); chartComposite.setChart(chart); chartComposite.forceRedraw(); }