List of usage examples for org.jfree.chart.plot XYPlot setDomainGridlinePaint
public void setDomainGridlinePaint(Paint paint)
From source file:code.google.gclogviewer.GCLogViewer.java
private JFreeChart createLDSTrendChart(GCLogData data) { XYDataset ldsTrendDataset = createLDSTrendDataset(data); JFreeChart chart = ChartFactory.createXYLineChart("Live Data Size Trend", "Time(S)", "Size(K)", ldsTrendDataset, PlotOrientation.VERTICAL, true, true, false); chart.setBackgroundPaint(java.awt.Color.white); chart.setBorderVisible(true);// www . j av a 2 s .co m chart.setBorderPaint(java.awt.Color.BLACK); XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(java.awt.Color.lightGray); plot.setDomainGridlinePaint(java.awt.Color.white); plot.setRangeGridlinePaint(java.awt.Color.white); plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0)); plot.getRangeAxis().setFixedDimension(15.0); return chart; }
From source file:code.google.gclogviewer.GCLogViewer.java
private JFreeChart createPTOSTrendChart(GCLogData data) { XYDataset ldsTrendDataset = createPTOSTrendDataset(data); JFreeChart chart = ChartFactory.createXYLineChart("Promotion To Old Size Trend", "Time(S)", "Size(K)", ldsTrendDataset, PlotOrientation.VERTICAL, true, true, false); chart.setBackgroundPaint(java.awt.Color.white); chart.setBorderVisible(true);//from ww w . ja v a2 s . co m chart.setBorderPaint(java.awt.Color.BLACK); XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(java.awt.Color.lightGray); plot.setDomainGridlinePaint(java.awt.Color.white); plot.setRangeGridlinePaint(java.awt.Color.white); plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0)); plot.getRangeAxis().setFixedDimension(15.0); return chart; }
From source file:code.google.gclogviewer.GCLogViewer.java
/** * create Memory Trend Chart/* w w w . j ava 2 s . c om*/ */ private JFreeChart createMemoryTrendChart(GCLogData data) { XYDataset memoryTrendDataset = createMemoryTrendDataset(data, null); JFreeChart chart = ChartFactory.createXYLineChart("Memory Trend", "Time(S)", "Memory Change(K)", memoryTrendDataset, PlotOrientation.VERTICAL, true, true, false); chart.setBackgroundPaint(java.awt.Color.white); chart.setBorderVisible(true); chart.setBorderPaint(java.awt.Color.BLACK); XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(java.awt.Color.lightGray); plot.setDomainGridlinePaint(java.awt.Color.white); plot.setRangeGridlinePaint(java.awt.Color.white); plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0)); plot.getRangeAxis().setFixedDimension(15.0); return chart; }
From source file:edu.ucla.stat.SOCR.analyses.gui.Chart.java
protected JFreeChart createQQChart(String title, String xLabel, String yLabel, XYDataset dataset, String other) {//w w w . j a va2s .c o m // create the chart... JFreeChart chart = ChartFactory.createXYLineChart(title, // chart title xLabel, // x axis label yLabel, // y axis label dataset, // data PlotOrientation.VERTICAL, true, // include legend true, // tooltips false // urls ); // NOW DO SOME OPTIONAL CUSTOMISATION OF THE CHART... chart.setBackgroundPaint(Color.white); // get a reference to the plot for further customisation... XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(Color.white); plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0)); plot.setDomainGridlinePaint(Color.lightGray); plot.setRangeGridlinePaint(Color.lightGray); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); // renderer.setShapesVisible(true); renderer.setBaseShapesFilled(true); // renderer.setLinesVisible(false); renderer.setSeriesLinesVisible(1, true); renderer.setSeriesShapesVisible(1, false); renderer.setSeriesLinesVisible(0, false); renderer.setSeriesShapesVisible(0, true); //renderer.setLegendItemLabelGenerator(new SOCRXYSeriesLabelGenerator()); // change the auto tick unit selection to integer units only... NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(); rangeAxis.setAutoRangeIncludesZero(false); rangeAxis.setUpperMargin(0.02); rangeAxis.setLowerMargin(0.02); // rangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis(); domainAxis.setAutoRangeIncludesZero(false); domainAxis.setUpperMargin(0.02); domainAxis.setLowerMargin(0.02); // domainAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); // OPTIONAL CUSTOMISATION COMPLETED. //setQQSummary(dataset); // very confusing return chart; }
From source file:msi.gama.outputs.layers.charts.ChartJFreeChartOutputScatter.java
@Override public void initChart(final IScope scope, final String chartname) { super.initChart(scope, chartname); final XYPlot pp = (XYPlot) chart.getPlot(); pp.setDomainGridlinePaint(axesColor); pp.setRangeGridlinePaint(axesColor); pp.setDomainCrosshairPaint(axesColor); pp.setRangeCrosshairPaint(axesColor); pp.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0)); pp.setDomainCrosshairVisible(false); pp.setRangeCrosshairVisible(false);// ww w. j a va2 s . c o m pp.getDomainAxis().setAxisLinePaint(axesColor); pp.getDomainAxis().setTickLabelFont(getTickFont()); pp.getDomainAxis().setLabelFont(getLabelFont()); if (textColor != null) { pp.getDomainAxis().setLabelPaint(textColor); pp.getDomainAxis().setTickLabelPaint(textColor); } NumberAxis axis = (NumberAxis) pp.getRangeAxis(); axis = formatYAxis(scope, axis); pp.setRangeAxis(axis); if (ytickunit > 0) { ((NumberAxis) pp.getRangeAxis()).setTickUnit(new NumberTickUnit(ytickunit)); pp.setRangeGridlinesVisible(true); } else pp.setRangeGridlinesVisible(GamaPreferences.Displays.CHART_GRIDLINES.getValue()); // resetAutorange(scope); if (getType() == ChartOutput.SERIES_CHART) { if (xlabel == null) xlabel = "time"; } if (getType() == ChartOutput.XY_CHART) { } if (getType() == ChartOutput.SCATTER_CHART) { } if (!this.getXTickValueVisible(scope)) { pp.getDomainAxis().setTickMarksVisible(false); pp.getDomainAxis().setTickLabelsVisible(false); } }
From source file:adams.flow.sink.JFreeChartPlot.java
/** * Displays the token (the panel and dialog have already been created at * this stage)./*from w w w.j a va 2 s . co m*/ * * @param token the token to display */ @Override protected void display(Token token) { SpreadSheet sheet; Dataset dataset; Shape shape; XYPlot plot; sheet = (SpreadSheet) token.getPayload(); dataset = m_Dataset.generate(sheet); m_JFreeChart = m_Chart.generate(dataset); m_JFreeChart.getPlot().setBackgroundPaint(Color.WHITE); if (m_JFreeChart.getPlot() instanceof XYPlot) { plot = (XYPlot) m_JFreeChart.getPlot(); plot.setDomainGridlinesVisible(true); plot.setDomainGridlinePaint(Color.GRAY); plot.setRangeGridlinesVisible(true); plot.setRangeGridlinePaint(Color.GRAY); plot.getRenderer().setSeriesPaint(0, m_PlotColor); if (plot.getSeriesCount() > 1) plot.getRenderer().setSeriesPaint(1, m_DiagonalColor); shape = m_Shape.generate(); if (shape != null) plot.getRenderer().setSeriesShape(0, shape); } m_PlotPanel = new ChartPanel(m_JFreeChart); m_Panel.removeAll(); m_Panel.add(m_PlotPanel, BorderLayout.CENTER); }
From source file:org.gephi.statistics.plugin.DegreeDistribution.java
/** * * @return The undirected version of this report. *//*from w w w.j a v a 2s. c om*/ private String getUndirectedReport() { double max = 0; XYSeries series2 = new XYSeries("Series 2"); for (int i = 1; i < combinedDistribution[1].length; i++) { if (combinedDistribution[1][i] > 0) { series2.add((Math.log(combinedDistribution[0][i]) / Math.log(Math.E)), (Math.log(combinedDistribution[1][i]) / Math.log(Math.E))); max = (float) Math.max((Math.log(combinedDistribution[0][i]) / Math.log(Math.E)), max); } } double a = combinedAlpha; double b = combinedBeta; XYSeries series1 = new XYSeries(combinedAlpha + " "); series1.add(0, a); series1.add(max, a + b * max); XYSeriesCollection dataset = new XYSeriesCollection(); dataset.addSeries(series1); dataset.addSeries(series2); JFreeChart chart = ChartFactory.createXYLineChart("Degree Distribution", "Degree", "Occurrence", dataset, PlotOrientation.VERTICAL, true, false, false); XYPlot plot = (XYPlot) chart.getPlot(); XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(); renderer.setSeriesLinesVisible(0, true); renderer.setSeriesShapesVisible(0, false); renderer.setSeriesLinesVisible(1, false); renderer.setSeriesShapesVisible(1, true); renderer.setSeriesShape(1, new java.awt.geom.Ellipse2D.Double(0, 0, 1, 1)); plot.setBackgroundPaint(java.awt.Color.WHITE); plot.setDomainGridlinePaint(java.awt.Color.GRAY); plot.setRangeGridlinePaint(java.awt.Color.GRAY); plot.setRenderer(renderer); String imageFile = ""; try { final ChartRenderingInfo info = new ChartRenderingInfo(new StandardEntityCollection()); TempDir tempDir = TempDirUtils.createTempDir(); final String fileName = "distribution.png"; final File file1 = tempDir.createFile(fileName); imageFile = "<IMG SRC=\"file:" + file1.getAbsolutePath() + "\" " + "WIDTH=\"600\" HEIGHT=\"400\" BORDER=\"0\" USEMAP=\"#chart\"></IMG>"; ChartUtilities.saveChartAsPNG(file1, chart, 600, 400, info); } catch (IOException e) { System.out.println(e.toString()); } String report = "<HTML> <BODY> <h1>Degree Distribution Metric Report </h1> " + "<hr>" + "<br>" + "<h2> Parameters: </h2>" + "Network Interpretation: " + (isDirected ? "directed" : "undirected") + "<br>" + "<br> <h2> Results: </h2>" + "Degree Power Law: -" + combinedAlpha + "\n <BR>" + imageFile + "</BODY> </HTML>"; return report; }
From source file:juicebox.windowui.QCDialog.java
public QCDialog(MainWindow mainWindow, HiC hic, String title) { super(mainWindow); Dataset dataset = hic.getDataset();// w w w.j av a 2 s . c om String text = dataset.getStatistics(); String textDescription = null; String textStatistics = null; String graphs = dataset.getGraphs(); JTextPane description = null; JTabbedPane tabbedPane = new JTabbedPane(); HTMLEditorKit kit = new HTMLEditorKit(); StyleSheet styleSheet = kit.getStyleSheet(); styleSheet.addRule("table { border-collapse: collapse;}"); styleSheet.addRule("body {font-family: Sans-Serif; font-size: 12;}"); styleSheet.addRule("td { padding: 2px; }"); styleSheet.addRule( "th {border-bottom: 1px solid #000; text-align: left; background-color: #D8D8D8; font-weight: normal;}"); if (text != null) { int split = text.indexOf("</table>") + 8; textDescription = text.substring(0, split); textStatistics = text.substring(split); description = new JTextPane(); description.setEditable(false); description.setContentType("text/html"); description.setEditorKit(kit); description.setText(textDescription); tabbedPane.addTab("About Library", description); JTextPane textPane = new JTextPane(); textPane.setEditable(false); textPane.setContentType("text/html"); textPane.setEditorKit(kit); textPane.setText(textStatistics); JScrollPane pane = new JScrollPane(textPane); tabbedPane.addTab("Statistics", pane); } boolean success = true; if (graphs != null) { long[] A = new long[2000]; long sumA = 0; long[] mapq1 = new long[201]; long[] mapq2 = new long[201]; long[] mapq3 = new long[201]; long[] intraCount = new long[100]; final XYSeries intra = new XYSeries("Intra Count"); final XYSeries leftRead = new XYSeries("Left"); final XYSeries rightRead = new XYSeries("Right"); final XYSeries innerRead = new XYSeries("Inner"); final XYSeries outerRead = new XYSeries("Outer"); final XYSeries allMapq = new XYSeries("All MapQ"); final XYSeries intraMapq = new XYSeries("Intra MapQ"); final XYSeries interMapq = new XYSeries("Inter MapQ"); Scanner scanner = new Scanner(graphs); try { while (!scanner.next().equals("[")) ; for (int idx = 0; idx < 2000; idx++) { A[idx] = scanner.nextLong(); sumA += A[idx]; } while (!scanner.next().equals("[")) ; for (int idx = 0; idx < 201; idx++) { mapq1[idx] = scanner.nextInt(); mapq2[idx] = scanner.nextInt(); mapq3[idx] = scanner.nextInt(); } for (int idx = 199; idx >= 0; idx--) { mapq1[idx] = mapq1[idx] + mapq1[idx + 1]; mapq2[idx] = mapq2[idx] + mapq2[idx + 1]; mapq3[idx] = mapq3[idx] + mapq3[idx + 1]; allMapq.add(idx, mapq1[idx]); intraMapq.add(idx, mapq2[idx]); interMapq.add(idx, mapq3[idx]); } while (!scanner.next().equals("[")) ; for (int idx = 0; idx < 100; idx++) { int tmp = scanner.nextInt(); if (tmp != 0) innerRead.add(logXAxis[idx], tmp); intraCount[idx] = tmp; tmp = scanner.nextInt(); if (tmp != 0) outerRead.add(logXAxis[idx], tmp); intraCount[idx] += tmp; tmp = scanner.nextInt(); if (tmp != 0) rightRead.add(logXAxis[idx], tmp); intraCount[idx] += tmp; tmp = scanner.nextInt(); if (tmp != 0) leftRead.add(logXAxis[idx], tmp); intraCount[idx] += tmp; if (idx > 0) intraCount[idx] += intraCount[idx - 1]; if (intraCount[idx] != 0) intra.add(logXAxis[idx], intraCount[idx]); } } catch (NoSuchElementException exception) { JOptionPane.showMessageDialog(getParent(), "Graphing file improperly formatted", "Error", JOptionPane.ERROR_MESSAGE); success = false; } if (success) { final XYSeriesCollection readTypeCollection = new XYSeriesCollection(); readTypeCollection.addSeries(innerRead); readTypeCollection.addSeries(outerRead); readTypeCollection.addSeries(leftRead); readTypeCollection.addSeries(rightRead); final JFreeChart readTypeChart = ChartFactory.createXYLineChart("Types of reads vs distance", // chart title "Distance (log)", // domain axis label "Binned Reads (log)", // range axis label readTypeCollection, // data PlotOrientation.VERTICAL, true, // include legend true, false); final XYPlot readTypePlot = readTypeChart.getXYPlot(); readTypePlot.setDomainAxis(new LogarithmicAxis("Distance (log)")); readTypePlot.setRangeAxis(new LogarithmicAxis("Binned Reads (log)")); readTypePlot.setBackgroundPaint(Color.white); readTypePlot.setRangeGridlinePaint(Color.lightGray); readTypePlot.setDomainGridlinePaint(Color.lightGray); readTypeChart.setBackgroundPaint(Color.white); readTypePlot.setOutlinePaint(Color.black); final ChartPanel chartPanel = new ChartPanel(readTypeChart); final XYSeriesCollection reCollection = new XYSeriesCollection(); final XYSeries reDistance = new XYSeries("Distance"); for (int i = 0; i < A.length; i++) { if (A[i] != 0) reDistance.add(i, A[i] / (float) sumA); } reCollection.addSeries(reDistance); final JFreeChart reChart = ChartFactory.createXYLineChart( "Distance from closest restriction enzyme site", // chart title "Distance (bp)", // domain axis label "Fraction of Reads (log)", // range axis label reCollection, // data PlotOrientation.VERTICAL, true, // include legend true, false); final XYPlot rePlot = reChart.getXYPlot(); rePlot.setDomainAxis(new NumberAxis("Distance (bp)")); rePlot.setRangeAxis(new LogarithmicAxis("Fraction of Reads (log)")); rePlot.setBackgroundPaint(Color.white); rePlot.setRangeGridlinePaint(Color.lightGray); rePlot.setDomainGridlinePaint(Color.lightGray); reChart.setBackgroundPaint(Color.white); rePlot.setOutlinePaint(Color.black); final ChartPanel chartPanel2 = new ChartPanel(reChart); final XYSeriesCollection intraCollection = new XYSeriesCollection(); intraCollection.addSeries(intra); final JFreeChart intraChart = ChartFactory.createXYLineChart("Intra reads vs distance", // chart title "Distance (log)", // domain axis label "Cumulative Sum of Binned Reads (log)", // range axis label intraCollection, // data PlotOrientation.VERTICAL, true, // include legend true, false); final XYPlot intraPlot = intraChart.getXYPlot(); intraPlot.setDomainAxis(new LogarithmicAxis("Distance (log)")); intraPlot.setRangeAxis(new NumberAxis("Cumulative Sum of Binned Reads (log)")); intraPlot.setBackgroundPaint(Color.white); intraPlot.setRangeGridlinePaint(Color.lightGray); intraPlot.setDomainGridlinePaint(Color.lightGray); intraChart.setBackgroundPaint(Color.white); intraPlot.setOutlinePaint(Color.black); final ChartPanel chartPanel3 = new ChartPanel(intraChart); final XYSeriesCollection mapqCollection = new XYSeriesCollection(); mapqCollection.addSeries(allMapq); mapqCollection.addSeries(intraMapq); mapqCollection.addSeries(interMapq); final JFreeChart mapqChart = ChartFactory.createXYLineChart("MapQ Threshold Count", // chart title "MapQ threshold", // domain axis label "Count", // range axis label mapqCollection, // data PlotOrientation.VERTICAL, true, // include legend true, // include tooltips false); final XYPlot mapqPlot = mapqChart.getXYPlot(); mapqPlot.setBackgroundPaint(Color.white); mapqPlot.setRangeGridlinePaint(Color.lightGray); mapqPlot.setDomainGridlinePaint(Color.lightGray); mapqChart.setBackgroundPaint(Color.white); mapqPlot.setOutlinePaint(Color.black); final ChartPanel chartPanel4 = new ChartPanel(mapqChart); tabbedPane.addTab("Pair Type", chartPanel); tabbedPane.addTab("Restriction", chartPanel2); tabbedPane.addTab("Intra vs Distance", chartPanel3); tabbedPane.addTab("MapQ", chartPanel4); } } final ExpectedValueFunction df = hic.getDataset().getExpectedValues(hic.getZoom(), hic.getNormalizationType()); if (df != null) { double[] expected = df.getExpectedValues(); final XYSeriesCollection collection = new XYSeriesCollection(); final XYSeries expectedValues = new XYSeries("Expected"); for (int i = 0; i < expected.length; i++) { if (expected[i] > 0) expectedValues.add(i + 1, expected[i]); } collection.addSeries(expectedValues); String title1 = "Expected at " + hic.getZoom() + " norm " + hic.getNormalizationType(); final JFreeChart readTypeChart = ChartFactory.createXYLineChart(title1, // chart title "Distance between reads (log)", // domain axis label "Genome-wide expected (log)", // range axis label collection, // data PlotOrientation.VERTICAL, false, // include legend true, false); final XYPlot readTypePlot = readTypeChart.getXYPlot(); readTypePlot.setDomainAxis(new LogarithmicAxis("Distance between reads (log)")); readTypePlot.setRangeAxis(new LogarithmicAxis("Genome-wide expected (log)")); readTypePlot.setBackgroundPaint(Color.white); readTypePlot.setRangeGridlinePaint(Color.lightGray); readTypePlot.setDomainGridlinePaint(Color.lightGray); readTypeChart.setBackgroundPaint(Color.white); readTypePlot.setOutlinePaint(Color.black); final ChartPanel chartPanel5 = new ChartPanel(readTypeChart); tabbedPane.addTab("Expected", chartPanel5); } if (text == null && graphs == null) { JOptionPane.showMessageDialog(this, "Sorry, no metrics are available for this dataset", "Error", JOptionPane.ERROR_MESSAGE); setVisible(false); dispose(); } else { getContentPane().add(tabbedPane); pack(); setModal(false); setLocation(100, 100); setTitle(title); setVisible(true); } }
From source file:desmoj.extensions.visualization2d.engine.modelGrafic.StatisticGrafic.java
/** * Build content for animationType StatisticGrafic.ANIMATION_Histogram * @return//from ww w . j av a2s. com * @throws ModelException */ private JPanel buildHistogramPanel() throws ModelException { XIntervalSeriesCollection dataset = new XIntervalSeriesCollection(); dataset.addSeries(this.statistic.getHistogram()); this.chart = ChartFactory.createXYBarChart(null, "Observation", false, "Count", dataset, PlotOrientation.VERTICAL, false, true, false); this.chart.setBackgroundPaint(Grafic.COLOR_BACKGROUND); XYPlot plot = this.chart.getXYPlot(); plot.setBackgroundPaint(StatisticGrafic.DIAGRAM_BACKGROUND); plot.setDomainGridlinePaint(StatisticGrafic.DIAGRAM_GRID); plot.setRangeGridlinePaint(StatisticGrafic.DIAGRAM_GRID); plot.setDomainCrosshairVisible(true); plot.setRangeCrosshairVisible(true); ValueAxis rangeAxis = (ValueAxis) plot.getRangeAxis(); rangeAxis.setLabelFont(Grafic.FONT_DEFAULT); ValueAxis domainAxis = plot.getDomainAxis(); domainAxis.setLabelFont(Grafic.FONT_DEFAULT); domainAxis.setAutoRange(true); XYBarRenderer renderer = (XYBarRenderer) plot.getRenderer(); renderer.setShadowVisible(false); renderer.setBarPainter(new StandardXYBarPainter()); renderer.setDrawBarOutline(true); renderer.setSeriesPaint(0, StatisticGrafic.DIAGRAM_FORGROUND); renderer.setSeriesOutlinePaint(0, StatisticGrafic.DIAGRAM_BORDER); renderer.setSeriesOutlineStroke(0, new BasicStroke(1.0f)); this.buildHistogramAxisFormat(plot, "Observations"); JPanel out = new ChartPanel(chart); out.setPreferredSize(new Dimension(350, 200)); return out; }
From source file:jchrest.gui.VisualSearchPane.java
private ChartPanel createPanel() { XYSeriesCollection dataset = new XYSeriesCollection(); dataset.addSeries(_trainingTimes);/* w ww. ja v a 2 s. c o m*/ JFreeChart chart = ChartFactory.createXYLineChart("Plot of network size vs. number of training patterns", "Number of training patterns", "Network size", dataset, org.jfree.chart.plot.PlotOrientation.VERTICAL, true, true, false); XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(Color.lightGray); plot.setDomainGridlinePaint(Color.white); plot.setRangeGridlinePaint(Color.white); plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0)); plot.setDomainCrosshairVisible(true); plot.setRangeCrosshairVisible(true); XYItemRenderer r = plot.getRenderer(); if (r instanceof XYLineAndShapeRenderer) { XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) r; renderer.setBaseShapesVisible(true); renderer.setBaseShapesFilled(true); renderer.setDrawSeriesLineAsPath(true); } return new ChartPanel(chart); }