Example usage for org.jdom2 Element Element

Introduction

In this page you can find the example usage for org.jdom2 Element Element.

Prototype

public Element(final String name)

Source Link

Document

Create a new element with the supplied (local) name and no namespace.

Usage

From source file:com.ohnosequences.xml.model.ContigXML.java

License:Open Source License

private void initHspsTag() {
    Element hsps = root.getChild(HSPS_TAG_NAME);
    if (hsps == null) {
        hsps = new Element(HSPS_TAG_NAME);
        root.addContent(hsps);//from ww  w . j a  v a2 s .c om
    }
}

From source file:com.ohnosequences.xml.model.cufflinks.CuffLinksElement.java

License:Open Source License

public CuffLinksElement() {
    super(new Element(TAG_NAME));
}

From source file:com.ohnosequences.xml.model.embl.EmblXML.java

License:Open Source License

public EmblXML() {
    super(new Element(TAG_NAME));

}

From source file:com.ohnosequences.xml.model.Frameshift.java

License:Open Source License

public Frameshift() {
    super(new Element(TAG_NAME));
}

From source file:com.ohnosequences.xml.model.Gap.java

License:Open Source License

public Gap() {
    super(new Element(TAG_NAME));
}

From source file:com.ohnosequences.xml.model.gb.GenBankXML.java

License:Open Source License

public GenBankXML() {
    super(new Element(TAG_NAME));

}

From source file:com.ohnosequences.xml.model.genome.feature.Feature.java

License:Open Source License

public void appendToSequence(String value) {
    Element seqElem = root.getChild(SEQUENCE_TAG_NAME);
    if (seqElem == null) {
        root.addContent(new Element(SEQUENCE_TAG_NAME));
        seqElem = root.getChild(SEQUENCE_TAG_NAME);
    }//from w  w w . ja v  a 2  s . c  o m
    seqElem.setText(seqElem.getText() + value);
}

From source file:com.ohnosequences.xml.model.genome.feature.Feature.java

License:Open Source License

public void setOddAxisPalindromicityResult(PalindromicityResultXML result) {
    root.removeChildren(ODD_AXIS_PALINDROMICITY_TAG_NAME);
    Element elem = new Element(ODD_AXIS_PALINDROMICITY_TAG_NAME);
    elem.addContent(result.getRoot());//  w  w  w .ja v  a2 s  .  co  m
    root.addContent(elem);
}

From source file:com.ohnosequences.xml.model.genome.feature.Feature.java

License:Open Source License

public void setEvenAxisPalindromicityResult(PalindromicityResultXML result) {
    root.removeChildren(EVEN_AXIS_PALINDROMICITY_TAG_NAME);
    Element elem = new Element(EVEN_AXIS_PALINDROMICITY_TAG_NAME);
    elem.addContent(result.getRoot());/*  w  ww  . ja  v a2s  . c o m*/
    root.addContent(elem);
}

From source file:com.ohnosequences.xml.model.genome.feature.Feature.java

License:Open Source License

public void setMaxWordLengthOddAxisPalindromicityResult(PalindromicityResultXML result) {
    root.removeChildren(MAX_WORD_LENGTH_ODD_AXIS_PALINDROMICITY_TAG_NAME);
    Element elem = new Element(MAX_WORD_LENGTH_ODD_AXIS_PALINDROMICITY_TAG_NAME);
    elem.addContent(result.getRoot());//from w  w  w  .  ja  v a2 s  . c om
    root.addContent(elem);
}