Java tutorial
/* * Copyright (C) 2010-2012 "Oh no sequences!" * * This is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/> */ package com.ohnosequences.xml.model.embl; import com.ohnosequences.xml.api.model.XMLElement; import com.ohnosequences.xml.api.model.XMLElementException; import org.jdom2.Element; public class EmblXML extends XMLElement { public static final String TAG_NAME = "embl_xml"; public static final String STRAIN_TAG_NAME = "strain"; public static final String ID_TAG_NAME = "id"; public static final String MOL_TYPE_TAG_NAME = "mol_type"; public static final String DEFINITION_TAG_NAME = "definition"; public static final String ORGANISM_TAG_NAME = "organism"; public static final String ORGANISM_COMPLETE_TAXONOMY_LINEAGE_TAG_NAME = "organism_complete_taxonomy_lineage"; public static final String LOCUS_TAG_PREFIX_TAG_NAME = "locus_tag_prefix"; public EmblXML() { super(new Element(TAG_NAME)); } public EmblXML(Element elem) throws XMLElementException { super(elem); if (!elem.getName().equals(TAG_NAME)) { throw new XMLElementException(XMLElementException.WRONG_TAG_NAME, new XMLElement(elem)); } } public EmblXML(String value) throws Exception { super(value); if (!root.getName().equals(TAG_NAME)) { throw new XMLElementException(XMLElementException.WRONG_TAG_NAME, new XMLElement(value)); } } //----------------GETTERS------------------- public String getDefinition() { return getNodeText(DEFINITION_TAG_NAME); } public String getLocusTagPrefix() { return getNodeText(LOCUS_TAG_PREFIX_TAG_NAME); } public String getOrganismCompleteTaxonomyLineage() { return getNodeText(ORGANISM_COMPLETE_TAXONOMY_LINEAGE_TAG_NAME); } public String getMolType() { return getNodeText(MOL_TYPE_TAG_NAME); } public String getOrganism() { return getNodeText(ORGANISM_TAG_NAME); } public String getStrain() { return getNodeText(STRAIN_TAG_NAME); } public String getId() { return getNodeText(ID_TAG_NAME); } //----------------SETTERS------------------- public void setDefinition(String value) { setNodeText(DEFINITION_TAG_NAME, value); } public void setLocusTagPrefix(String value) { setNodeText(LOCUS_TAG_PREFIX_TAG_NAME, value); } public void setId(String value) { setNodeText(ID_TAG_NAME, value); } public void setOrganismCompleteTaxonomyLineage(String value) { setNodeText(ORGANISM_COMPLETE_TAXONOMY_LINEAGE_TAG_NAME, value); } public void setMolType(String value) { setNodeText(MOL_TYPE_TAG_NAME, value); } public void setOrganism(String value) { setNodeText(ORGANISM_TAG_NAME, value); } public void setStrain(String value) { setNodeText(STRAIN_TAG_NAME, value); } }