Example usage for org.hibernate Session update

Introduction

In this page you can find the example usage for org.hibernate Session update.

Prototype

void update(Object object);

Source Link

Document

Update the persistent instance with the identifier of the given detached instance.

Usage

From source file:au.org.theark.lims.model.dao.InventoryDao.java

License:Open Source License

public void updateInvSite(LimsVO modelObject) {

    InvSite invSite = modelObject.getInvSite();
    Session session = getSession();
    session.update(invSite);
    session.flush();/*from w ww.j av a2 s  .com*/
    session.refresh(invSite);
    List<StudyInvSite> existingInvSites = invSite.getStudyInvSites();

    //for (StudyInvSite sis : modelObject.getInvSite().getStudyInvSites()) {
    //      session.delete(sis);
    //      session.flush();
    //}

    List<Long> selectedAndExistingStudies = new ArrayList<Long>();
    List<Study> selectedStudies = modelObject.getSelectedStudies();

    for (Study selectedStudy : selectedStudies) {
        boolean studyAlreadyLinked = false;
        log.info("selected =" + selectedStudy.getId());

        for (StudyInvSite sis : existingInvSites) {
            Study existingStudy = sis.getStudy();
            log.info("  existing=" + selectedStudy.getId());
            if (existingStudy.getId().equals(selectedStudy.getId())) {
                log.info("found a match for " + selectedStudy.getId());
                studyAlreadyLinked = true;
                selectedAndExistingStudies.add(selectedStudy.getId());
                break; // leave it along
            }
        }

        if (!studyAlreadyLinked) {
            log.info("about to create" + selectedStudy.getId());
            StudyInvSite studyInvSite = new StudyInvSite();
            studyInvSite.setStudy(selectedStudy);
            studyInvSite.setInvSite(invSite);
            session.save(studyInvSite);
        }

    }

    for (StudyInvSite sis : existingInvSites) {
        log.info("about to investigate for deletion existing study " + sis.getStudy().getId());
        boolean deletePreviouslyExistingSiteAsItWasNotSelected = true;
        for (Long selectedId : selectedAndExistingStudies) {
            log.info("compare it to selected " + selectedId);
            if (selectedId.equals(sis.getStudy().getId())) {
                log.info("recommending you don't delete");
                deletePreviouslyExistingSiteAsItWasNotSelected = false;
            } else {
                log.info("match not found.");
            }
        }
        if (deletePreviouslyExistingSiteAsItWasNotSelected) {
            log.info("deleting " + sis.getStudy().getId());
            session.delete(sis);
        }
    }
    session.flush();
    session.refresh(invSite);

    //List<StudyInvSite> existingInvSites = invSite.getStudyInvSites();

    //for (StudyInvSite sis : modelObject.getInvSite().getStudyInvSites()) {
    //   session.delete(sis);
    //   session.flush();
    //}

    /*
            
    List<Study> selectedAndExistingStudies = new ArrayList<Study>();
    List<Study> selectedStudies = modelObject.getSelectedStudies();
            
    for (Study selectedStudy : selectedStudies) {
       boolean studyAlreadyLinked = false;
       for(StudyInvSite sis: existingInvSites){
    Study existingStudy = sis.getStudy();
    if(existingStudy.equals(selectedStudy)){
       studyAlreadyLinked = true;
       selectedAndExistingStudies.add(selectedStudy);
       break; // leave it along
    }
       }
               
       if(!studyAlreadyLinked){
    StudyInvSite studyInvSite = new StudyInvSite();
    studyInvSite.setStudy(selectedStudy);
    studyInvSite.setInvSite(modelObject.getInvSite());
    session.save(studyInvSite);
       }
               
    }
            
    for(StudyInvSite sis: existingInvSites){
       if(!selectedAndExistingStudies.contains(sis.getStudy())){
    session.delete(sis);
       }
    }
    */
}

From source file:au.org.theark.lims.model.dao.InventoryDao.java

License:Open Source License

public void unallocateBox(InvBox invBox) {
    Session session = getSession();
    for (InvCell invCell : invBox.getInvCells()) {
        invCell.setBiospecimen(null);//  ww  w  . j  a  va2 s .com
        session.update(invCell);
    }
    session.refresh(invBox);
}

From source file:au.org.theark.phenotypic.model.dao.PhenotypicDao.java

License:Open Source License

/**
 * Update CustomFieldGroup and its related CustomFields(Add or remove)
 *//*from w w w.j a v a 2 s .co  m*/
public void updateCustomFieldGroup(CustomFieldGroupVO customFieldGroupVO)
        throws EntityExistsException, ArkSystemException {

    CustomFieldGroup customFieldGroup = customFieldGroupVO.getCustomFieldGroup();
    Session session = getSession();
    session.update(customFieldGroup);//Update

    if (!customFieldGroup.getPublished()) {//Allow Removal only if the form is not published
        Collection<CustomFieldDisplay> customFieldDisplayToRemove = getCustomFieldDisplayToRemove(
                customFieldGroupVO.getSelectedCustomFields(), customFieldGroup);
        for (CustomFieldDisplay cfd : customFieldDisplayToRemove) {
            session.delete(cfd);
        }
    }

    ArrayList<CustomFieldDisplay> customFieldsToAdd = getCustomFieldsToAdd(
            customFieldGroupVO.getSelectedCustomFields(), customFieldGroup);
    for (CustomFieldDisplay fieldToAdd : customFieldsToAdd) {
        session.saveOrUpdate(fieldToAdd);//Add a new CustomFieldDisplay field that is linked to the CustomField   
    }

    ArrayList<CustomField> list = customFieldGroupVO.getSelectedCustomFields();
    int position = 0;

    for (CustomField customField : list) {
        ++position;
        CustomFieldDisplay cfd = iArkCommonService.getCustomFieldDisplayByCustomField(customField,
                customFieldGroupVO.getCustomFieldGroup());
        cfd.setSequence(new Long(position));
        session.update(cfd);
    }

}

From source file:au.org.theark.study.model.dao.StudyDao.java

License:Open Source License

public void create(Study study, Collection<ArkModule> selectedModules, Study parentStudy) {
    Session session = getSession();
    session.save(study);//from  w  ww.j a  v a  2 s . co m
    linkStudyToArkModule(study, selectedModules, session, au.org.theark.core.Constants.MODE_NEW);

    // Update parent study accordingly
    if (parentStudy != null) {
        parentStudy.setParentStudy(parentStudy);
        session.update(parentStudy);
    }
}

From source file:au.org.theark.study.model.dao.StudyDao.java

License:Open Source License

public void create(Study study, ArkUserVO arkUserVo, Collection<ArkModule> selectedModules) {
    Session session = getSession();
    session.save(study);/*from w  ww.jav a 2  s.c  o m*/
    linkStudyToArkModule(study, selectedModules, session, au.org.theark.core.Constants.MODE_NEW);

    // Update parent study accordingly
    Study parentStudy = study.getParentStudy();
    if (parentStudy != null) {
        parentStudy.setParentStudy(parentStudy);
        session.update(parentStudy);
    }

    // Assign user to newly created study
    try {
        iArkAuthorisationService.updateArkUser(arkUserVo);
    } catch (ArkSystemException e) {
        log.error(e.getMessage());
    } catch (EntityNotFoundException e) {
        log.error(e.getMessage());
    }
}

From source file:au.org.theark.study.model.dao.StudyDao.java

License:Open Source License

private void linkStudyToArkModule(Study study, Collection<ArkModule> selectedModules, Session session,
        int mode) {
    for (ArkModule arkModule : selectedModules) {
        LinkStudyArkModule linkStudyArkModule = new LinkStudyArkModule();
        linkStudyArkModule.setStudy(study);
        linkStudyArkModule.setArkModule(arkModule);
        if (mode == au.org.theark.core.Constants.MODE_NEW) {
            session.save(linkStudyArkModule);
        } else {/*w  w w . ja v  a  2 s .  c  o m*/
            session.update(linkStudyArkModule);
        }
    }
}

From source file:au.org.theark.study.model.dao.StudyDao.java

License:Open Source License

public void updateStudy(Study studyEntity) {
    // session.update and session.flush required as Blob read/writes are used, and InputStream may cause NullPointers when closed incorrectly
    Session session = getSession();
    session.update(studyEntity);
    // session.refresh(studyEntity);

    session.flush();//from w w  w.  java2 s  .  c om
}

From source file:au.org.theark.study.model.dao.StudyDao.java

License:Open Source License

public void updateSubject(SubjectVO subjectVO) throws ArkUniqueException {
    Session session = getSession();

    Person person = subjectVO.getLinkSubjectStudy().getPerson();
    String currentLastNameFromDB = getCurrentLastnameFromDB(person);// may need to test this effect of a reget

    session.update(person);// Update Person and associated Phones

    PersonLastnameHistory personLastNameHistory = null;

    if (currentLastNameFromDB != null && !currentLastNameFromDB.isEmpty()
            && !currentLastNameFromDB.equalsIgnoreCase(person.getLastName())) {
        if (person.getLastName() != null) {
            personLastNameHistory = new PersonLastnameHistory();
            personLastNameHistory.setPerson(person);
            personLastNameHistory.setLastName(currentLastNameFromDB);
            session.save(personLastNameHistory);
        }/*from www  .  j a v  a 2s  .com*/
    }

    // Update subjectPreviousLastname
    if (personLastNameHistory != null) {
        subjectVO.setSubjectPreviousLastname(getPreviousLastname(person));
    }

    LinkSubjectStudy linkSubjectStudy = subjectVO.getLinkSubjectStudy();
    session.merge(linkSubjectStudy);
}

From source file:au.org.theark.study.model.dao.StudyDao.java

License:Open Source License

public void update(Address address) throws ArkSystemException {
    Session session = getSession();
    session.update(address);
}

From source file:au.org.theark.study.model.dao.StudyDao.java

License:Open Source License

public void update(ConsentFile consentFile) throws ArkSystemException, EntityNotFoundException {
    Session session = getSession();

    dateNow = new Date(System.currentTimeMillis());
    consentFile.setUpdateTime(dateNow);//  w  ww.  ja v  a 2  s.  c  o  m

    if ((ConsentFile) session.get(ConsentFile.class, consentFile.getId()) != null) {
        session.update(consentFile);
    } else {
        throw new EntityNotFoundException(
                "The Consent file record you tried to update does not exist in the Ark System");
    }
}