Example usage for org.hibernate Session merge

List of usage examples for org.hibernate Session merge

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Introduction

In this page you can find the example usage for org.hibernate Session merge.

Prototype

Object merge(Object object);

Source Link

Document

Copy the state of the given object onto the persistent object with the same identifier.

Usage

From source file:edu.ku.brc.specify.datamodel.busrules.DivisionBusRules.java

License:Open Source License

/**
 * /*w w  w  . j a v  a 2  s.c  om*/
 */
private void addNewDivision() {
    if (!checkForParentSave(formViewObj, Institution.getClassTableId())) {
        return;
    }

    if (!askForExitonChange("ASK_TO_ADD_DIV")) {
        return;
    }
    UIRegistry.writeSimpleGlassPaneMsg(UIRegistry.getResourceString("BUILD_DIV"), 20); // I18N
    isOKToCont = true;
    final AppContextMgr acm = AppContextMgr.getInstance();

    UIRegistry.loadAndPushResourceBundle("specifydbsetupwiz");

    final SpecifyDBSetupWizard wizardPanel = new SpecifyDBSetupWizard(SpecifyDBSetupWizard.WizardType.Division,
            null);

    String bldTitle = UIRegistry.getResourceString("CREATEDIV");
    final CustomDialog dlg = new CustomDialog((Frame) UIRegistry.getMostRecentWindow(), "", true,
            CustomDialog.NONE_BTN, wizardPanel);
    dlg.setCustomTitleBar(bldTitle);
    wizardPanel.setListener(new SpecifyDBSetupWizard.WizardListener() {
        @Override
        public void cancelled() {
            isOKToCont = false;
            dlg.setVisible(false);
        }

        @Override
        public void finished() {
            dlg.setVisible(false);
        }

        @Override
        public void hide() {
            dlg.setVisible(false);
        }

        @Override
        public void panelChanged(String title) {
            dlg.setTitle(title);
        }

        @Override
        public void helpContextChanged(String helpTarget) {

        }
    });
    UIHelper.centerAndShow(dlg);

    UIRegistry.popResourceBundle();

    if (!isOKToCont) {
        UIRegistry.clearSimpleGlassPaneMsg();
        return;
    }

    wizardPanel.processDataForNonBuild();

    final BuildSampleDatabase bldSampleDB = new BuildSampleDatabase();
    final ProgressFrame progressFrame = bldSampleDB.createProgressFrame(bldTitle);
    progressFrame.turnOffOverAll();

    progressFrame.setProcess(0, 17);
    progressFrame.setProcessPercent(true);
    progressFrame.getCloseBtn().setVisible(false);
    progressFrame.setAlwaysOnTop(true);
    progressFrame.adjustProgressFrame();

    UIHelper.centerAndShow(progressFrame);

    SwingWorker<Integer, Integer> bldWorker = new SwingWorker<Integer, Integer>() {
        private int steps = 0;
        private Division newDivision = null;

        /* (non-Javadoc)
         * @see javax.swing.SwingWorker#doInBackground()
         */
        @SuppressWarnings("cast")
        @Override
        protected Integer doInBackground() throws Exception {
            firePropertyChange(PROGRESS, 0, ++steps);

            bldSampleDB.setDataType(acm.getClassObject(DataType.class));

            Division curDivCached = acm.getClassObject(Division.class);
            Discipline curDispCached = acm.getClassObject(Discipline.class);
            Collection curCollCached = acm.getClassObject(Collection.class);

            acm.setClassObject(Division.class, null);
            acm.setClassObject(Discipline.class, null);
            acm.setClassObject(Collection.class, null);

            // I don't think this is necessary
            // rods - 08/27/09
            //UIFieldFormatterMgr.getInstance().reset();
            //DataObjFieldFormatMgr.getInstance().reset();

            Session session = null;
            try {
                session = HibernateUtil.getNewSession();
                DataProviderSessionIFace hSession = new HibernateDataProviderSession(session);

                Institution inst = (Institution) formViewObj.getMVParent().getMultiViewParent().getData();
                Institution institution = hSession.get(Institution.class, inst.getId());
                SpecifyUser specifyAdminUser = (SpecifyUser) acm.getClassObject(SpecifyUser.class);
                Properties props = wizardPanel.getProps();

                institution = (Institution) session.merge(institution);
                specifyAdminUser = (SpecifyUser) hSession
                        .getData("FROM SpecifyUser WHERE id = " + specifyAdminUser.getId());

                bldSampleDB.setSession(session);

                DisciplineType dispType = (DisciplineType) props.get("disciplineType");
                newDivision = bldSampleDB.createEmptyDivision(institution, dispType, specifyAdminUser, props,
                        true, false, true);

                acm.setClassObject(Division.class, curDivCached);
                acm.setClassObject(Discipline.class, curDispCached);
                acm.setClassObject(Collection.class, curCollCached);

            } catch (Exception ex) {
                ex.printStackTrace();

            } finally {
                if (session != null) {
                    session.close();
                }
            }

            bldSampleDB.setDataType(null);

            return null;
        }

        @Override
        protected void done() {
            super.done();

            progressFrame.setVisible(false);
            progressFrame.dispose();

            if (newDivision != null) {
                List<?> dataItems = null;

                FormViewObj instFVO = formViewObj.getMVParent().getMultiViewParent()
                        .getCurrentViewAsFormViewObj();
                Institution inst = (Institution) instFVO.getDataObj();
                DataProviderSessionIFace pSession = null;
                try {
                    pSession = DataProviderFactory.getInstance().createSession();

                    inst = (Institution) pSession.getData("FROM Institution WHERE id = " + inst.getId());
                    inst.forceLoad();

                    acm.setClassObject(Institution.class, inst);

                    dataItems = pSession.getDataList("FROM Institution");
                    if (dataItems.get(0) instanceof Object[]) {
                        Vector<Object> dataList = new Vector<Object>();
                        for (Object row : dataItems) {
                            Object[] cols = (Object[]) row;
                            Institution div = (Institution) cols[0];
                            div.forceLoad();
                            dataList.add(div);
                        }
                        dataItems = dataList;
                    }

                } catch (Exception ex) {
                    System.err.println(ex);
                    ex.printStackTrace();

                } finally {
                    if (pSession != null) {
                        pSession.close();
                    }
                }

                // Not needed now that we are exiting
                //int curInx = instFVO.getRsController().getCurrentIndex();
                //instFVO.setDataObj(dataItems);
                //instFVO.getRsController().setIndex(curInx);

            } else {
                // error creating
            }
            UIRegistry.clearSimpleGlassPaneMsg();

            UIRegistry.showLocalizedMsg("Specify.ABT_EXIT");
            CommandDispatcher.dispatch(new CommandAction(BaseTask.APP_CMD_TYPE, BaseTask.APP_REQ_EXIT));

        }
    };

    bldWorker.execute();

}

From source file:edu.ku.brc.specify.dbsupport.CollectionAutoNumber.java

License:Open Source License

@Override
protected String getHighestObject(final UIFieldFormatterIFace formatter, final Session session,
        final String value, final Pair<Integer, Integer> yearPos, final Pair<Integer, Integer> pos)
        throws Exception {
    boolean doDebug = false;

    Collection currCol = AppContextMgr.getInstance().getClassObject(Collection.class);
    AutoNumberingScheme catNumScheme = currCol.getNumberingSchemesByType(CollectionObject.getClassTableId());
    if (catNumScheme == null) {
        throw new RuntimeException("The Catalog Numbering Scheme cannot be null! Collection Table ID: "
                + CollectionObject.getClassTableId());
    }/* w w w.  j a v a  2s .  c  o  m*/
    catNumScheme = (AutoNumberingScheme) session.merge(catNumScheme);

    if (doDebug)
        System.out.println("CatNumScheme: " + catNumScheme.getSchemeName());

    Vector<Integer> ids = new Vector<Integer>();
    for (Collection collection : catNumScheme.getCollections()) {
        if (doDebug)
            System.out.println(
                    "adding ID: " + collection.getCollectionId() + "  " + collection.getCollectionName());
        ids.add(collection.getCollectionId());
    }

    StringBuilder sb = new StringBuilder(
            "SELECT CatalogNumber FROM collectionobject WHERE CollectionMemberID IN (");
    Connection conn = null;
    Statement stmt = null;

    for (int i = 0; i < ids.size(); i++) {
        if (i > 0)
            sb.append(',');
        sb.append(ids.get(i));
    }
    sb.append(") ORDER BY CatalogNumber DESC");
    log.debug(sb.toString());

    try {
        conn = DBConnection.getInstance().getConnection();
        stmt = conn.createStatement(ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY);
        ResultSet rs = stmt.executeQuery(sb.toString());

        String catNum = null;
        if (rs.next()) {
            catNum = rs.getString(1);
        }
        rs.close();

        return catNum;

    } catch (SQLException e) {
        edu.ku.brc.af.core.UsageTracker.incrSQLUsageCount();
        edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(CollectionAutoNumber.class, e);
        log.error("Exception caught: " + e); //$NON-NLS-1$
        e.printStackTrace();

    } finally {
        try {
            if (stmt != null)
                stmt.close();

        } catch (SQLException e) {
            edu.ku.brc.af.core.UsageTracker.incrSQLUsageCount();
            edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(CollectionAutoNumber.class, e);
            log.error("Exception caught: " + e.toString()); //$NON-NLS-1$
            e.printStackTrace();
        }
    }

    return null;
}

From source file:edu.ku.brc.specify.treeutils.HibernateTreeDataServiceImpl.java

License:Open Source License

/**
 * Merges object with session.//w  ww.  ja  v  a 2 s . c  om
 * @param session the session
 * @param object the object to be merged
 * @return a new object after the merge.
 */
private Object mergeIntoSession(final Session session, final Object object) {
    return session.merge(object);
}

From source file:edu.nps.moves.mmowgli.hibernate.HSessionAccessor.java

License:Open Source License

static <T> T merge(T obj, Session sess)
//-------------------------------------
{
    MSysOut.println(HIBERNATE_SESSION_LOGS, "Session merge of " + obj.getClass().getSimpleName() + " "
            + obj.hashCode() + " session: " + sess.hashCode());
    return (T) sess.merge(obj);
}

From source file:edu.scripps.fl.pubchem.PubChemDB.java

License:Apache License

public static void saveXRefs(Session session, PCAssay assay) {
    for (PCAssayXRef assayXRef : assay.getAssayXRefs()) {
        XRef xref = assayXRef.getXRef();
        //         System.out.println(String.format("AID = %s, db = %s, xrefid = %s", assay.getAID(), xref.getDatabase(), xref.getXRefId()));
        Criteria criteria = session.createCriteria(XRef.class);
        criteria.add(Restrictions.eq("database", xref.getDatabase()));
        criteria.add(Restrictions.eq("XRefId", xref.getXRefId()));
        XRef dbxref = (XRef) criteria.uniqueResult();
        if (null == dbxref)
            session.save(xref);/*from  w w  w.ja  v a  2s  . c  om*/
        else {
            xref.setId(dbxref.getId());
            xref = (XRef) session.merge(xref);
        }
    }
}

From source file:edu.scripps.fl.pubchem.PubChemFactory.java

License:Apache License

public void populateAssayResults(Session session, PCAssay assay, InputStream is) throws Exception {
    long counter = 0L;
    PCAssayColumn activeColumn = assay.getActiveColumn();
    List<PCAssayColumn> testedCols = assay.getTestedColumns();

    CsvReader reader = new CsvReader(new BufferedReader(new InputStreamReader(is)), ',');
    reader.readHeaders();/*from   w  ww .java  2 s .c o m*/
    String[] headers = reader.getHeaders();

    Transaction trx = session.beginTransaction();
    while (reader.readRecord()) {

        String[] values = reader.getValues();

        String[] sids = reader.get("PUBCHEM_SID").split("\\s*,\\s*");

        if (sids.length > 1) {
            log.warn(String.format("AID %s has %s SIDS on a line", assay.getAID(), sids.length));
        }

        for (String sid : sids) {

            PCAssayResult result = new PCAssayResult();

            result.setSID(Long.parseLong(sid));

            String cid = reader.get("PUBCHEM_CID");
            if (!"".equals(cid))
                result.setCID(Long.parseLong(cid));

            result.setComments(reader.get("PUBCHEM_ASSAYDATA_COMMENT"));

            int outcome = Integer.parseInt(reader.get("PUBCHEM_ACTIVITY_OUTCOME"));
            result.setOutcome(getOutcome(outcome));

            String score = reader.get("PUBCHEM_ACTIVITY_SCORE");
            if (!"".equals(score))
                result.setRankScore(Integer.parseInt(score));

            result.setURL(reader.get("PUBCHEM_ACTIVITY_URL"));

            result.setXref(reader.get("PUBCHEM_EXT_DATASOURCE_REGID"));

            // if a dose response assay with a marked activeConcentration
            if ("confirmatory".equals(assay.getActivityOutcomeMethod()) && activeColumn != null) {
                String actConc = reader.get("" + activeColumn.getTID());
                if (!"".equals(actConc)) {
                    result.setPrimaryValue(Double.valueOf(actConc));
                    result.setPrimaryColumn(activeColumn);

                    PCAssayColumn qualCol = assay.getQualifierColumn();
                    if (qualCol != null) {
                        String qual = reader.get("" + qualCol.getTID()); // get(String)
                        if (!"".equals(qual))
                            result.setQualifier(qual);
                    }
                }

            } else if ("screening".equals(assay.getActivityOutcomeMethod()) && testedCols.size() > 0) {
                PCAssayColumn testedCol = testedCols.get(0);
                String value = reader.get("" + testedCol.getTID());
                result.setPrimaryColumn(testedCol);
                if (!"".equals(value))
                    if ("float".equals(testedCol.getType()) || "int".equals(testedCol.getType()))
                        result.setPrimaryValue(Double.parseDouble(value));
                    else
                        result.setPrimaryValueAsString(value);
            }
            // put all testedConcentration columns into an ordered array.
            // Interested in numbers here only.
            result.getTestedValues().clear();
            for (int ii = 0; ii < testedCols.size(); ii++) {
                String value = reader.get("" + testedCols.get(ii).getTID());
                try {
                    Double dbl = Double.parseDouble(value);
                    result.getTestedValues().set(ii, dbl);
                } catch (NumberFormatException ex) {
                    // if not a number then don't worry about it.
                }
            }

            List<String> list = result.getAllValues();
            list.clear();
            for (PCAssayColumn col : assay.getColumns()) {
                if (col.getTID() > 0) { // not the outcome and score
                    String value = reader.get("" + col.getTID());
                    list.set(col.getTID() - 1, value);
                }
            }

            result.setAssay(assay);

            session.save(result);

            if (++counter % 100 == 0) {
                trx.commit();
                session.clear(); // else huge build up of hibernate memory
                // cache
                trx = session.beginTransaction();
            }
            if (counter % 10000 == 0)
                log.debug(String.format("AID %s: processed %s results", assay.getAID(), counter));
        }
    }
    log.debug(String.format("Processed AID: %s, contained %s results", assay.getAID(), counter));
    assay = (PCAssay) session.merge(assay);
    assay.setVersionChanged(false);
    session.save(assay);
    trx.commit();
}

From source file:eionet.webq.dao.ProjectFileStorageImpl.java

License:Mozilla Public License

/**
 * Updates all fields.//from  w  w  w . java  2s. co  m
 *
 * @param projectFile project file
 */
private void fullUpdate(ProjectFile projectFile) {
    Session currentSession = getCurrentSession();
    projectFile.setUpdated(new Timestamp(System.currentTimeMillis()));
    currentSession.merge(projectFile);
    currentSession.flush();
}

From source file:es.emergya.bbdd.dao.BandejaEntradaHome.java

License:Open Source License

@Transactional(propagation = Propagation.REQUIRES_NEW, readOnly = false, rollbackFor = Throwable.class)
public boolean saveOrUpdate(Inbox b) {
    Session currentSession = getSession();
    currentSession.flush();/*from  w w w .  j  av  a2 s .co  m*/
    currentSession.saveOrUpdate(currentSession.merge(b));
    return true;

}

From source file:es.emergya.bbdd.dao.CapaInformacionHome.java

License:Open Source License

@Transactional(propagation = Propagation.REQUIRES_NEW, readOnly = false, rollbackFor = Throwable.class)
public boolean saveOrUpdate(CapaInformacion p) {
    if (p == null) {
        return false;
    }/*from  w  ww  .  j  av a  2  s .  c  o m*/

    CapaInformacion entity = null;
    try {
        Session currentSession = getSession();
        if (p.getId() != null && this.get(p.getId()) != null) {
            entity = (CapaInformacion) currentSession.merge(p);
        }

        if (entity == null) {
            entity = p;
        }

        if (p.getOrden() == null && entity.getOrden() == null) {
            entity.setOrden(getTotal() + 1);
        }

        currentSession.saveOrUpdate(entity);

        return true;
    } catch (Throwable t) {
        log.error(t, t);
        return false;
    }
}

From source file:es.emergya.bbdd.dao.FlotaHome.java

License:Open Source License

@Transactional(propagation = Propagation.REQUIRES_NEW, readOnly = false, rollbackFor = Throwable.class)
public boolean saveOrUpdate(Flota f) {
    boolean res = false;
    if (f == null)
        return res;
    try {/*from   w ww.  j a  v a2  s .  c  o  m*/
        log.debug("Saving " + f);
        final Set<Rol> roles = f.getRoles();
        final Set<Recurso> recurso = f.getRecurso();
        removeRecursos(f);
        removeRoles(f);
        Session currentSession = getSession();
        currentSession.clear();

        Flota entity = null;

        if (f.getId() != null && this.get(f.getId()) != null)
            entity = (Flota) currentSession.merge(f);
        else
            entity = f;
        if (recurso != null)
            for (Recurso r : recurso) {
                r = (Recurso) currentSession.get(Recurso.class, r.getId());
                if (r != null) {
                    r.setFlotas(entity);
                    currentSession.saveOrUpdate(r);
                }
            }

        if (roles != null)
            for (Rol r : roles) {
                Rol rentity = (Rol) currentSession.get(Rol.class, r.getId());
                if (rentity != null) {
                    rentity.getFlotas().add(entity);
                    currentSession.saveOrUpdate(rentity);
                }
            }

        currentSession.saveOrUpdate(entity);
    } catch (Throwable t) {
        log.error(t, t);
        return false;
    }
    return true;
}