List of usage examples for org.dom4j Node accept
void accept(Visitor visitor);
accept is the method used in the Visitor Pattern.
From source file:edu.scripps.fl.pubchem.web.session.PCDepositionSystemSession.java
License:Apache License
/** * // www . j a v a 2 s. c o m * Logs into your PubChem Deposition System account * * @param username * @param password * @throws Exception */ public void login(String username, String password) throws Exception { Document doc = getDocument("http://" + SITE + "/deposit/deposit.cgi"); Node formNode = doc.selectSingleNode("//form[@name='deplogform']"); FormControlVisitorSupport fcvs = new FormControlVisitorSupport(); formNode.accept(fcvs); Set<String> set = new HashSet<String>(parameters); set.add("login"); set.add("password"); List<NameValuePair> params = new ArrayList<NameValuePair>(); for (Map.Entry<String, String> entry : fcvs.getFormParameters().entrySet()) { if (!set.contains(entry.getKey())) params.add(new BasicNameValuePair(entry.getKey(), entry.getValue())); } addParameters(params, "wcev:src", "logmgr", "wcev:name", "login", "wcev:data", "true", "wc:scrollx", 0, "wc:scrolly", 0, "login", username, "password", password); String page = postPage("http://" + SITE + "/deposit/deposit.cgi", new UrlEncodedFormEntity(params, HTTP.UTF_8)); if (page.contains("Error while Performing an Action")) throw new Exception("PubChem Login Failure: Error while Performing an Action"); }
From source file:edu.scripps.fl.pubchem.web.session.PCWebSession.java
License:Apache License
/** * //from w w w.ja v a2 s . c o m * Returns counts of active, all, inactive, inconclusive and probe * substances in the aid. * * @param aid * @return OutComeCount * @throws Exception */ public PCOutcomeCounts getSubstanceOutcomeCounts(int aid) throws Exception { PCOutcomeCounts oc = null; Document doc = getDocument("http://" + SITE + "/assay/assay.cgi?aid=" + aid); Node node = doc.selectSingleNode("//div[@id='uptsub']"); // Node node = doc.selectSingleNode("//b[. = 'Links:']"); //Node node = doc.selectSingleNode("//b[. = 'Substances: ']"); if (node != null) { node = node.getParent(); AppendingVisitorSupport visitor = new AppendingVisitorSupport(); node.accept(visitor); String text = visitor.getText(); Pattern sectionPattern = Pattern.compile("Tested Substances(.+)", Pattern.DOTALL | Pattern.MULTILINE); Matcher matcher = sectionPattern.matcher(text); Boolean found = matcher.find(); if (found) { text = matcher.group(1); Pattern countPattern; if (text.contains("(")) countPattern = Pattern.compile("([\\w]+)\\((\\d+)\\)"); else countPattern = Pattern.compile("([\\w]+):\\s+(\\d+)"); matcher = countPattern.matcher(text); oc = new PCOutcomeCounts(); while (matcher.find()) { String outcome = matcher.group(1); int count = Integer.parseInt(matcher.group(2)); if ("All".equalsIgnoreCase(outcome)) oc.all = count; else if (outcome.contains("All")) oc.all = count; else if ("Active".equalsIgnoreCase(outcome)) oc.active = count; else if ("Inactive".equalsIgnoreCase(outcome)) oc.inactive = count; else if ("Inconclusive".equalsIgnoreCase(outcome)) oc.inconclusive = count; else if ("Probe".equalsIgnoreCase(outcome)) oc.probe = count; } } } return oc; }
From source file:edu.scripps.fl.pubchem.web.session.WebSessionBase.java
License:Apache License
protected void addFormParts(Node formNode, MultipartEntity entity, Set<String> ignore) throws UnsupportedEncodingException { FormControlVisitorSupport fcvs = new FormControlVisitorSupport(); formNode.accept(fcvs); for (Map.Entry<String, String> entry : fcvs.getFormParameters().entrySet()) { if (!ignore.contains(entry.getKey())) entity.addPart(entry.getKey(), new StringBody(entry.getValue())); }//from ww w .j a v a 2 s. c o m }
From source file:io.mashin.oep.hpdl.XMLReadUtils.java
License:Open Source License
public static Node schemaVersionParentNode(Node node) { Node[] parentNode = new Node[1]; node.accept(new VisitorSupport() { @Override/*from w w w. j a va 2 s . com*/ public void visit(Attribute node) { if (node.getName().equalsIgnoreCase(XMLUtils.SCHEMA_VERSION_TAG)) { parentNode[0] = node.getParent(); } } }); return parentNode[0]; }
From source file:org.orbeon.oxf.xforms.submission.XFormsSubmissionUtils.java
License:Open Source License
/** * Check whether an XML sub-tree satisfies validity and required MIPs. * * @param indentedLogger logger/*from ww w. j a v a 2 s . c o m*/ * @param startNode node to check * @param recurse whether to recurse into attributes and descendant nodes * @return true iif the sub-tree passes the checks */ public static boolean isSatisfiesValid(final IndentedLogger indentedLogger, final Node startNode, boolean recurse) { if (recurse) { // Recurse into attributes and descendant nodes final boolean[] instanceSatisfiesValidRequired = new boolean[] { true }; startNode.accept(new VisitorSupport() { public final void visit(Element element) { final boolean valid = checkInstanceData(element); instanceSatisfiesValidRequired[0] &= valid; if (!valid && indentedLogger.isDebugEnabled()) { indentedLogger.logDebug("", "found invalid element", "element name", Dom4jUtils.elementToDebugString(element)); } } public final void visit(Attribute attribute) { final boolean valid = checkInstanceData(attribute); instanceSatisfiesValidRequired[0] &= valid; if (!valid && indentedLogger.isDebugEnabled()) { indentedLogger.logDebug("", "found invalid attribute", "attribute name", Dom4jUtils.attributeToDebugString(attribute), "parent element", Dom4jUtils.elementToDebugString(attribute.getParent())); } } private boolean checkInstanceData(Node node) { return InstanceData.getValid(node); } }); return instanceSatisfiesValidRequired[0]; } else { // Just check the current node return InstanceData.getValid(startNode); } }
From source file:org.orbeon.oxf.xml.dom4j.Dom4jUtils.java
License:Open Source License
/** * Go over the Node and its children and make sure that there are no two contiguous text nodes so as to ensure that * XPath expressions run correctly. As per XPath 1.0 (http://www.w3.org/TR/xpath): * * "As much character data as possible is grouped into each text node: a text node never has an immediately * following or preceding sibling that is a text node." * * dom4j Text and CDATA nodes are combined together. * * @param nodeToNormalize Node hierarchy to normalize * @return the input node, normalized *//*w ww . j a v a 2 s . com*/ public static Node normalizeTextNodes(Node nodeToNormalize) { final List<Node> nodesToDetach = new ArrayList<Node>(); nodeToNormalize.accept(new VisitorSupport() { public void visit(Element element) { final List children = element.content(); Node previousNode = null; StringBuilder sb = null; for (Iterator i = children.iterator(); i.hasNext();) { final Node currentNode = (Node) i.next(); if (previousNode != null) { if (isTextOrCDATA(previousNode) && isTextOrCDATA(currentNode)) { final CharacterData previousNodeText = (CharacterData) previousNode; if (sb == null) sb = new StringBuilder(previousNodeText.getText()); sb.append(currentNode.getText()); nodesToDetach.add(currentNode); } else if (isTextOrCDATA(previousNode)) { // Update node if needed if (sb != null) { previousNode.setText(sb.toString()); } previousNode = currentNode; sb = null; } else { previousNode = currentNode; sb = null; } } else { previousNode = currentNode; sb = null; } } // Update node if needed if (previousNode != null && sb != null) { previousNode.setText(sb.toString()); } } }); // Detach nodes only in the end so as to not confuse the acceptor above for (final Node currentNode : nodesToDetach) { currentNode.detach(); } return nodeToNormalize; }