Example usage for org.dom4j Element add

List of usage examples for org.dom4j Element add

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Introduction

In this page you can find the example usage for org.dom4j Element add.

Prototype

void add(Namespace namespace);

Source Link

Document

Adds the given Namespace to this element.

Usage

From source file:at.jabberwocky.impl.core.io.PacketReader.java

private Document parseDocument() throws DocumentException, IOException, XmlPullParserException {
    DocumentFactory df = docFactory;//from  w w  w  .  j a v  a  2  s.co  m
    Document document = df.createDocument();
    Element parent = null;
    XmlPullParser pp = parser;
    int count = 0;
    while (true) {
        int type = -1;
        type = pp.nextToken();
        switch (type) {
        case XmlPullParser.PROCESSING_INSTRUCTION: {
            String text = pp.getText();
            int loc = text.indexOf(" ");
            if (loc >= 0) {
                document.addProcessingInstruction(text.substring(0, loc), text.substring(loc + 1));
            } else {
                document.addProcessingInstruction(text, "");
            }
            break;
        }
        case XmlPullParser.COMMENT: {
            if (parent != null) {
                parent.addComment(pp.getText());
            } else {
                document.addComment(pp.getText());
            }
            break;
        }
        case XmlPullParser.CDSECT: {
            String text = pp.getText();
            if (parent != null) {
                parent.addCDATA(text);
            } else {
                if (text.trim().length() > 0) {
                    throw new DocumentException("Cannot have text content outside of the root document");
                }
            }
            break;

        }
        case XmlPullParser.ENTITY_REF: {
            String text = pp.getText();
            if (parent != null) {
                parent.addText(text);
            } else {
                if (text.trim().length() > 0) {
                    throw new DocumentException("Cannot have an entityref outside of the root document");
                }
            }
            break;
        }
        case XmlPullParser.END_DOCUMENT: {
            return document;
        }
        case XmlPullParser.START_TAG: {
            QName qname = (pp.getPrefix() == null) ? df.createQName(pp.getName(), pp.getNamespace())
                    : df.createQName(pp.getName(), pp.getPrefix(), pp.getNamespace());
            Element newElement = null;
            // Do not include the namespace if this is the start tag of a new packet
            // This avoids including "jabber:client", "jabber:server" or
            // "jabber:component:accept"
            if ("jabber:client".equals(qname.getNamespaceURI())
                    || "jabber:server".equals(qname.getNamespaceURI())
                    || "jabber:component:accept".equals(qname.getNamespaceURI())
                    || "http://jabber.org/protocol/httpbind".equals(qname.getNamespaceURI())) {
                newElement = df.createElement(pp.getName());
            } else {
                newElement = df.createElement(qname);
            }
            int nsStart = pp.getNamespaceCount(pp.getDepth() - 1);
            int nsEnd = pp.getNamespaceCount(pp.getDepth());
            for (int i = nsStart; i < nsEnd; i++) {
                if (pp.getNamespacePrefix(i) != null) {
                    newElement.addNamespace(pp.getNamespacePrefix(i), pp.getNamespaceUri(i));
                }
            }
            for (int i = 0; i < pp.getAttributeCount(); i++) {
                QName qa = (pp.getAttributePrefix(i) == null) ? df.createQName(pp.getAttributeName(i))
                        : df.createQName(pp.getAttributeName(i), pp.getAttributePrefix(i),
                                pp.getAttributeNamespace(i));
                newElement.addAttribute(qa, pp.getAttributeValue(i));
            }
            if (parent != null) {
                parent.add(newElement);
            } else {
                document.add(newElement);
            }
            parent = newElement;
            count++;
            break;
        }
        case XmlPullParser.END_TAG: {
            if (parent != null) {
                parent = parent.getParent();
            }
            count--;
            if (count < 1) {
                return document;
            }
            break;
        }
        case XmlPullParser.TEXT: {
            String text = pp.getText();
            if (parent != null) {
                parent.addText(text);
            } else {
                if (text.trim().length() > 0) {
                    throw new DocumentException("Cannot have text content outside of the root document");
                }
            }
            break;
        }
        default:
        }
    }
}

From source file:bio.pih.genoogle.io.Output.java

/**
 * @param searchResults/*from   w  ww . j a  va  2s  . co  m*/
 * 
 * @return {@link Document} containing the {@link SearchResults} in XML form.
 */
public static Document genoogleOutputToXML(List<SearchResults> searchResults) {
    assert searchResults != null;
    DocumentFactory factory = DocumentFactory.getInstance();

    Document doc = factory.createDocument();
    doc.setName("genoogle");

    Element output = doc.addElement(Genoogle.SOFTWARE_NAME);
    output.addAttribute("version", Genoogle.VERSION.toString());
    output.addAttribute("copyright", Genoogle.COPYRIGHT);

    Element iterationsElement = output.addElement("iterations");
    for (int i = 0; i < searchResults.size(); i++) {
        SearchResults searchResult = searchResults.get(i);

        Element iterationElement = iterationsElement.addElement("iteration");
        iterationElement.addAttribute("number", String.valueOf(i));

        SymbolList query = searchResult.getParams().getQuery();
        if (query instanceof RichSequence) {
            iterationElement.addAttribute("query", ((RichSequence) query).getHeader());
        }

        iterationElement.add(searchResultToXML(searchResult));
    }

    return doc;
}

From source file:bio.pih.genoogle.io.Output.java

/**
 * @param searchResult/*from  w w w  .  j a v a 2  s  . c  o  m*/
 * 
 * @return {@link Document} containing the {@link SearchResults} in XML form.
 */
public static Document genoogleOutputToXML(SearchResults searchResult) {
    assert searchResult != null;
    Element output = genoogleXmlHeader();
    output.add(searchResultToXML(searchResult));

    return output.getDocument();
}

From source file:bio.pih.genoogle.io.Output.java

/**
 * @param searchResult//  w ww  . j  av  a  2s .co m
 * @return {@link Element} containing the {@link SearchResults} at XML form.
 */
public static Element searchResultToXML(SearchResults searchResult) {
    assert searchResult != null;
    // TODO: Revise this behavor to throws the exception before.
    if (searchResult.hasFail()) {
        for (Throwable e : searchResult.getFails()) {
            e.printStackTrace(System.err);
        }
    }
    DocumentFactory factory = DocumentFactory.getInstance();
    Element resultsElement = factory.createElement("results");
    resultsElement.add(paramsToXML(searchResult.getParams()));
    resultsElement.add(hitsToXML(searchResult.getHits()));

    return resultsElement;
}

From source file:bio.pih.genoogle.io.Output.java

/**
 * @param hits/*from ww  w. j a va  2  s  . c o  m*/
 * @return {@link Element} containing the {@link List} of {@link Hit} at XML form.
 */
public static Element hitsToXML(List<Hit> hits) {
    assert hits != null;
    DocumentFactory factory = DocumentFactory.getInstance();

    Element hitsElement = factory.createElement("hits");
    for (Hit hit : hits) {
        hitsElement.add(hitToXML(hit));
    }

    return hitsElement;
}

From source file:bio.pih.genoogle.io.Output.java

/**
 * @param hit//w w  w  .j  a  v  a 2  s  . co  m
 * @return {@link Element} containing the {@link Hit} at XML form.
 */
public static Element hitToXML(Hit hit) {
    assert hit != null;
    DocumentFactory factory = DocumentFactory.getInstance();

    Element hitElement = factory.createElement("hit");
    hitElement.addAttribute("id", hit.getId());
    hitElement.addAttribute("gi", hit.getGi());
    hitElement.addAttribute("description", hit.getDescription());
    hitElement.addAttribute("accession", hit.getAccession());
    hitElement.addAttribute("length", Integer.toString(hit.getLength()));
    hitElement.addAttribute("databank", hit.getDatabankName());
    hitElement.add(hspsToXML(hit.getHSPs()));

    return hitElement;
}

From source file:bio.pih.genoogle.io.Output.java

/**
 * @param hsps//from  w  w  w  . j a v  a 2  s . c  om
 * @return {@link Element} containing the {@link List} of {@link HSP} at XML form.
 */
public static Element hspsToXML(List<HSP> hsps) {
    assert hsps != null;
    DocumentFactory factory = DocumentFactory.getInstance();

    Element hspsElement = factory.createElement("hsps");
    for (HSP hsp : hsps) {
        hspsElement.add(hspToXML(hsp));
    }

    return hspsElement;
}

From source file:BlastResultXMLsplit.BlastXMLsplit.java

public BlastXMLsplit(String filepath, int seqnumber)
        throws FileNotFoundException, IOException, ParserConfigurationException {
    SAXReader reader = new SAXReader();
    reader.setValidation(false);/*from   w ww .  j  a v  a2 s . c  om*/
    try {
        System.out.println("Xlmfile reading");
        Document document = reader.read(new FileInputStream(filepath));//XMLdocument?
        System.out.println("Xlmfile read done!");
        org.dom4j.DocumentFactory DocumentFactory = new org.dom4j.DocumentFactory();

        ArrayList str = new ArrayList();//??? 

        String fileoutpath;

        org.dom4j.Element rootElm = document.getRootElement();//
        File f = new File(filepath);
        int count = 1;
        List<org.dom4j.Element> blastOutput_iterations = rootElm.element("BlastOutput_iterations").elements();//?
        org.dom4j.Element BlastOutput_program = rootElm.element("BlastOutput_program");
        org.dom4j.Element BlastOutput_version = rootElm.element("BlastOutput_version");
        org.dom4j.Element BlastOutput_reference = rootElm.element("BlastOutput_reference");
        org.dom4j.Element BlastOutput_db = rootElm.element("BlastOutput_db");
        //?
        BlastOutput_program.getParent().remove(BlastOutput_program);
        BlastOutput_version.getParent().remove(BlastOutput_version);
        BlastOutput_reference.getParent().remove(BlastOutput_reference);
        BlastOutput_db.getParent().remove(BlastOutput_db);
        // org.dom4j.Element BlastOutput_query_def=rootElm.element("BlastOutput_query-def");
        //org.dom4j.Element BBlastOutput_query_len=rootElm.element("BlastOutput_query-len");

        org.dom4j.Element BlastOutput_param = rootElm.element("BlastOutput_param");
        rootElm.remove(BlastOutput_param);

        String Iteration_queryIDstr, Iteration_queryDefstr, Iteration_query_len;
        List<org.dom4j.Element> Iterationlist = null;
        int size = blastOutput_iterations.size();
        System.out.println("Your query seqcount is " + size + "\r\n Start dividing your file");
        for (int i = 0; i < size; i = i + seqnumber) {
            //??
            fileoutpath = f.getParent() + System.getProperty("file.separator") + count + ".xml";
            count++;
            System.out.println("The " + count + " is located in " + fileoutpath);
            FileOutputStream fos = new FileOutputStream(fileoutpath);
            OutputFormat format = OutputFormat.createPrettyPrint();
            XMLWriter writer = new XMLWriter(fos, format);
            // XMLWriter writer = new XMLWriter(new FileOutputStream(fileoutpath));
            //w??
            org.dom4j.Element firstelement = blastOutput_iterations.get(i);
            Iteration_queryIDstr = firstelement.element("Iteration_query-ID").getText();
            Iteration_queryDefstr = firstelement.element("Iteration_query-def").getText();
            Iteration_query_len = firstelement.element("Iteration_query-len").getText();

            //org.dom4j.DocumentFactory DocumentFactory = new org.dom4j.DocumentFactory();

            Document document2 = DocumentHelper.createDocument();
            ;
            org.dom4j.Element BlastOutputElement = document2.addElement("BlastOutput");
            //doc.setRootElement(BlastOutputElement);
            //;
            BlastOutputElement.add(BlastOutput_program);
            BlastOutputElement.add(BlastOutput_version);
            BlastOutputElement.add(BlastOutput_reference);
            BlastOutputElement.add(BlastOutput_db);
            BlastOutputElement.addElement("BlastOutput_query-ID");
            BlastOutputElement.element("BlastOutput_query-ID").setText(Iteration_queryIDstr);
            BlastOutputElement.addElement("BlastOutput_query-def");
            BlastOutputElement.element("BlastOutput_query-def").setText(Iteration_queryDefstr);
            BlastOutputElement.addElement("BlastOutput_query-len");
            BlastOutputElement.element("BlastOutput_query-len").setText(Iteration_query_len);
            //                Element BlastOutput_param_new=DocumentFactory.createElement("BlastOutput_param");
            //                for (Iterator it = BlastOutput_param.elementIterator(); it.hasNext();) {
            //                    Element tempele=(Element) it.next();
            //                    tempele.getParent().remove(tempele);
            //                    BlastOutput_param_new.add(tempele);
            //                }
            BlastOutputElement.add(BlastOutput_param);
            //BlastOutputElement.add(BlastOutput_param);
            if (i + seqnumber < blastOutput_iterations.size()) {
                Iterationlist = blastOutput_iterations.subList(i, i + seqnumber);
            } else {
                Iterationlist = blastOutput_iterations.subList(i, blastOutput_iterations.size() - 1);
            }
            //System.out.println(Iterationlist.size());
            //?query
            resetIterationlist(Iterationlist);
            //?BlastOutput_iterations

            Element BlastOutput_iterations = DocumentFactory.createElement("BlastOutput_iterations");
            //BlastOutputElement.addAttribute("BlastOutput_iterations");
            //org.dom4j.Element BlastOutput_iterations = new org.dom4j.Element("BlastOutput_iterations");
            for (int j = 0; j < Iterationlist.size(); j++) {
                Iterationlist.get(j).getParent().remove(Iterationlist.get(j));
                //System.out.println(j);
                BlastOutput_iterations.add(Iterationlist.get(j));
            }
            BlastOutputElement.add(BlastOutput_iterations);

            //
            writer.write(document2);
            writer.close();
            BlastOutput_program.getParent().remove(BlastOutput_program);
            BlastOutput_version.getParent().remove(BlastOutput_version);
            BlastOutput_reference.getParent().remove(BlastOutput_reference);
            BlastOutput_db.getParent().remove(BlastOutput_db);
            BlastOutput_param.getParent().remove(BlastOutput_param);
        }
    } catch (DocumentException ex) {
        Logger.getLogger(BlastXMLsplit.class.getName()).log(Level.SEVERE, null, ex);
    }

}

From source file:ca.qc.cegepoutaouais.tge.pige.server.report.LateLoanReport.java

License:Open Source License

protected Document generateReport() throws ReportException {
    try {//from   w w w .j a  va2 s  .co  m
        String template = ReportHelper
                .convertStreamToString(ReportHelper.loadFileAsStream(TEMPLATE_BASE_PATH + TEMPLATE_FILENAME));
        String css = ReportHelper.convertStreamToString(
                ReportHelper.loadFileAsStream(TEMPLATE_BASE_PATH + TEMPLATE_STYLES_FILENAME));

        logger.debug("Inscription des donnes du rapport dans le modle.");

        template = MessageFormat.format(template, locale.getProperty("msg.report.lateLoansReportTitle"),
                MessageFormat.format(locale.getProperty("msg.report.reportGeneratedBy"), getAuthor(),
                        SimpleDateFormat.getDateInstance(SimpleDateFormat.LONG, Locale.CANADA_FRENCH)
                                .format(new Date())),
                locale.getProperty("msg.report.statistics"),
                locale.getProperty("msg.report.totalNumberOfLoans"),
                locale.getProperty("msg.report.numberOfLentLoans"),
                locale.getProperty("msg.report.numberOfLateLoans"), ((Integer) get("total-count")).toString(),
                ((Integer) get("lent-count")).toString(), ((Integer) get("late-count")).toString(),
                String.format("%2.2f", (Float) get("percent-lent")),
                String.format("%2.2f", (Float) get("percent-late")),
                locale.getProperty("msg.report.userListWithLateLoans"));

        Document docRoot = DocumentHelper.parseText(template);
        ReportHelper.applyStyleToHTML(docRoot, css);

        Element body = (Element) docRoot.selectSingleNode("//data");
        List<User> users = (List) get("users");
        StringBuilder builder = new StringBuilder("<div>");
        if (users.size() > 0) {
            for (User u : users) {
                builder.append(
                        "<table class='user-section' border='0' cellspacing='0' cellpadding='5px'><thead><tr><td class='user-section-header'>")
                        .append("[").append(u.getLoanNo()).append("] ").append(u.getLastname()).append(", ")
                        .append(u.getFirstname()).append("</td><td colspan='2' class='user-section-header'>")
                        .append(u.getEmail()).append("</td></tr><tr><td class='user-section-header'>")
                        .append("Quantit").append("</td><td class='user-section-header'>")
                        .append("Description").append("</td><td class='user-section-header'>")
                        .append("chance").append("</td></tr></thead><tbody>");
                Set<Loan> loans = u.getLoans();
                for (Loan l : loans) {
                    builder.append("<tr><td class='user-section-body'>").append(l.getQuantity())
                            .append("</td><td class='user-section-body'>").append(l.getDescription())
                            .append("</td><td class='user-section-body'>").append(l.getTerm().toString())
                            .append("</td></tr>");
                }
                builder.append("</tbody></table>");
            }
        } else {
            builder.append("<span>Aucun emprunt en retard!</span>");
        }
        builder.append("</div>");

        Document finalDoc = DocumentHelper.parseText(builder.toString());
        Element content = finalDoc.getRootElement();
        body.add(content);

        return docRoot;
    } catch (Exception ex) {
        throw new ReportException(ex);
    }
}

From source file:ca.qc.cegepoutaouais.tge.pige.server.report.ReportHelper.java

License:Open Source License

/**
 * Applique un style CSS  un document HTML.
 * La section 'head' du document HTML est extraite afin d'y insrer
 * le style CSS./*  w w w .j  a  v a 2  s .  c o  m*/
 *
 * @param htmlDoc document HTML  traiter
 * @param style style CSS  insrer
 * @throws ReportException
 */
public static void applyStyleToHTML(Document htmlDoc, String style) throws ReportException {
    Element headerTag = (Element) htmlDoc.selectSingleNode("//head");
    Element styleTag = DocumentHelper.createElement("style");
    styleTag.addText(style);
    headerTag.add(styleTag);
}