Example usage for org.apache.commons.cli Options Options

Introduction

In this page you can find the example usage for org.apache.commons.cli Options Options.

Prototype

Options

Source Link

Usage

From source file:it.iit.genomics.cru.genomics.misc.apps.Vcf2tabApp.java

public static void main(String[] args) throws IOException, ParseException {

    Options options = new Options();

    Option helpOpt = new Option("help", "print this message.");
    options.addOption(helpOpt);//  ww w. ja  v a  2  s .co  m

    Option option1 = new Option("f", "filename", true, "VCF file to load");
    option1.setRequired(true);
    options.addOption(option1);

    option1 = new Option("o", "outputfile", true, "outputfilene");
    option1.setRequired(true);
    options.addOption(option1);

    CommandLineParser parser = new BasicParser();
    CommandLine cmd = null;

    try {
        // parse the command line arguments
        cmd = parser.parse(options, args, true);
    } catch (ParseException exp) {
        displayUsage("vcf2tab", options);
        System.exit(1);
    }
    if (cmd.hasOption("help")) {
        displayUsage("vcf2tab", options);
        System.exit(0);
    }

    String filename = cmd.getOptionValue("f");
    String outputfilename = cmd.getOptionValue("o");

    Vcf2tab loader = new Vcf2tab();

    loader.file2tab(filename, outputfilename); //(args[0]);

}

---

From source file:com.dasasian.chok.tool.ZkTool.java

public static void main(String[] args) {
    final Options options = new Options();

    Option lsOption = new Option("ls", true, "list zp path contents");
    lsOption.setArgName("path");
    Option readOption = new Option("read", true, "read and print zp path contents");
    readOption.setArgName("path");
    Option rmOption = new Option("rm", true, "remove zk files");
    rmOption.setArgName("path");
    Option rmrOption = new Option("rmr", true, "remove zk directories");
    rmrOption.setArgName("path");

    OptionGroup actionGroup = new OptionGroup();
    actionGroup.setRequired(true);//from  w  w  w .  java 2 s.  c o m
    actionGroup.addOption(lsOption);
    actionGroup.addOption(readOption);
    actionGroup.addOption(rmOption);
    actionGroup.addOption(rmrOption);
    options.addOptionGroup(actionGroup);

    final CommandLineParser parser = new GnuParser();
    HelpFormatter formatter = new HelpFormatter();
    try {
        final CommandLine line = parser.parse(options, args);
        ZkTool zkTool = new ZkTool();
        if (line.hasOption(lsOption.getOpt())) {
            String path = line.getOptionValue(lsOption.getOpt());
            zkTool.ls(path);
        } else if (line.hasOption(readOption.getOpt())) {
            String path = line.getOptionValue(readOption.getOpt());
            zkTool.read(path);
        } else if (line.hasOption(rmOption.getOpt())) {
            String path = line.getOptionValue(rmOption.getOpt());
            zkTool.rm(path, false);
        } else if (line.hasOption(rmrOption.getOpt())) {
            String path = line.getOptionValue(rmrOption.getOpt());
            zkTool.rm(path, true);
        }
        zkTool.close();
    } catch (ParseException e) {
        System.out.println(e.getClass().getSimpleName() + ": " + e.getMessage());
        formatter.printHelp(ZkTool.class.getSimpleName(), options);
    }

}

---

From source file:com.rapleaf.hank.cli.AddRingGroup.java

public static void main(String[] args) throws IOException, ParseException, InvalidConfigurationException {
    Options options = new Options();
    options.addOption("r", "ring-group", true, "the name of the ring group to be created");
    options.addOption("d", "domain-group", true,
            "the name of the domain group that this ring group will be linked to");
    options.addOption("c", "config", true,
            "path of a valid config file with coordinator connection information");
    try {//ww  w.j a v a 2  s.  c  om
        CommandLine line = new GnuParser().parse(options, args);
        CommandLineChecker.check(line, options, new String[] { "config", "ring-group", "domain-group" },
                AddRingGroup.class);
        ClientConfigurator configurator = new YamlClientConfigurator(line.getOptionValue("config"));
        addRingGroup(configurator, line.getOptionValue("ring-group"), line.getOptionValue("domain-group"));
    } catch (ParseException e) {
        new HelpFormatter().printHelp("add_domain", options);
        throw e;
    }
}

---

From source file:net.anthonypoon.ngram.removespecial.Main.java

public static void main(String args[]) throws Exception {
    Options options = new Options();
    options.addOption("a", "action", true, "Action");
    options.addOption("i", "input", true, "input");
    options.addOption("o", "output", true, "output");
    options.addOption("c", "compressed", false, "is lzo zipped");
    CommandLineParser parser = new GnuParser();
    CommandLine cmd = parser.parse(options, args);
    Configuration conf = new Configuration();
    Job job = Job.getInstance(conf);/*from w  w  w .  j  a  v a2s. c  om*/
    if (cmd.hasOption("compressed")) {
        job.setInputFormatClass(SequenceFileAsTextInputFormat.class);
    }
    job.setJarByClass(Main.class);
    //job.setInputFormatClass(SequenceFileAsTextInputFormat.class); 
    job.setOutputKeyClass(Text.class);
    job.setOutputValueClass(Text.class);
    switch (cmd.getOptionValue("action")) {
    case "list":
        job.setMapperClass(ListMapper.class);
        //job.setNumReduceTasks(0);
        job.setReducerClass(ListReducer.class);
        break;
    case "remove":
        job.setMapperClass(RemoveMapper.class);
        job.setReducerClass(RemoveReducer.class);
        break;
    default:
        throw new IllegalArgumentException("Missing action");
    }
    String timestamp = new SimpleDateFormat("yyyy_MM_dd_HH_mm_ss").format(new Date());
    FileInputFormat.setInputPaths(job, new Path(cmd.getOptionValue("input")));
    FileOutputFormat.setOutputPath(job, new Path(cmd.getOptionValue("output") + "/" + timestamp));
    System.exit(job.waitForCompletion(true) ? 0 : 1);
}

---

From source file:edu.ucsb.cs.eager.sa.cerebro.ProfessorX.java

public static void main(String[] args) {
    Options options = new Options();
    options.addOption("i", "input-file", true, "Path to input xml file");
    options.addOption("r", "root-path", true, "Root path of all Git repositories");

    CommandLine cmd;//w w  w  .  j a  v a 2  s.co m
    try {
        CommandLineParser parser = new BasicParser();
        cmd = parser.parse(options, args);
    } catch (ParseException e) {
        System.err.println("Error: " + e.getMessage() + "\n");
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp("Cerebro", options);
        return;
    }

    String inputFileName = cmd.getOptionValue("i");
    if (inputFileName == null) {
        System.err.println("input file path is required");
        return;
    }

    String rootPath = cmd.getOptionValue("r");
    if (rootPath == null) {
        System.err.println("root path is required");
        return;
    }

    File inputFile = new File(inputFileName);
    DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance();
    Document doc;
    try {
        DocumentBuilder dBuilder = dbFactory.newDocumentBuilder();
        doc = dBuilder.parse(inputFile);
    } catch (Exception e) {
        System.err.println(e.getMessage());
        e.printStackTrace();
        return;
    }

    NodeList repoList = doc.getElementsByTagName("repo");
    for (int i = 0; i < repoList.getLength(); i++) {
        Element repo = (Element) repoList.item(i);
        String name = repo.getElementsByTagName("name").item(0).getTextContent();
        String classPath = repo.getElementsByTagName("classpath").item(0).getTextContent();
        Set<String> classes = new LinkedHashSet<String>();
        NodeList classesList = repo.getElementsByTagName("classes").item(0).getChildNodes();
        for (int j = 0; j < classesList.getLength(); j++) {
            if (!(classesList.item(j) instanceof Element)) {
                continue;
            }
            classes.add(classesList.item(j).getTextContent());
        }
        analyzeRepo(rootPath, name, classPath, classes);
    }
}

---

From source file:cc.wikitools.lucene.FindWikipediaArticleId.java

@SuppressWarnings("static-access")
public static void main(String[] args) throws Exception {
    Options options = new Options();
    options.addOption(//from  w  ww.j  a  va2s.co m
            OptionBuilder.withArgName("path").hasArg().withDescription("index location").create(INDEX_OPTION));
    options.addOption(
            OptionBuilder.withArgName("string").hasArg().withDescription("article title").create(TITLE_OPTION));

    CommandLine cmdline = null;
    CommandLineParser parser = new GnuParser();
    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        System.exit(-1);
    }

    if (!cmdline.hasOption(TITLE_OPTION) || !cmdline.hasOption(INDEX_OPTION)) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(FindWikipediaArticleId.class.getName(), options);
        System.exit(-1);
    }

    File indexLocation = new File(cmdline.getOptionValue(INDEX_OPTION));
    if (!indexLocation.exists()) {
        System.err.println("Error: " + indexLocation + " does not exist!");
        System.exit(-1);
    }

    String title = cmdline.getOptionValue(TITLE_OPTION);

    PrintStream out = new PrintStream(System.out, true, "UTF-8");

    WikipediaSearcher searcher = new WikipediaSearcher(indexLocation);
    int id = searcher.getArticleId(title);

    out.println(title + ": id = " + id);

    searcher.close();
    out.close();
}

---

From source file:com.google.cloud.pubsub.v1.TopicAdminSmokeTest.java

public static void main(String args[]) {
    Logger.getLogger("").setLevel(Level.WARNING);
    try {/*from   w  w  w  .j  a  va 2s  .  c  o  m*/
        Options options = new Options();
        options.addOption("h", "help", false, "show usage");
        options.addOption(Option.builder().longOpt("project_id").desc("Project id").hasArg()
                .argName("PROJECT-ID").required(true).build());
        CommandLine cl = (new DefaultParser()).parse(options, args);
        if (cl.hasOption("help")) {
            HelpFormatter formater = new HelpFormatter();
            formater.printHelp("TopicAdminSmokeTest", options);
        }
        executeNoCatch(cl.getOptionValue("project_id"));
        System.out.println("OK");
    } catch (Exception e) {
        System.err.println("Failed with exception:");
        e.printStackTrace(System.err);
        System.exit(1);
    }
}

---

From source file:it.anyplace.sync.webclient.Main.java

public static void main(String[] args) throws Exception {
    Options options = new Options();
    options.addOption("C", "set-config", true, "set config file for s-client");
    options.addOption("h", "help", false, "print help");
    CommandLineParser parser = new DefaultParser();
    CommandLine cmd = parser.parse(options, args);

    if (cmd.hasOption("h")) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp("s-client", options);
        return;//from  www.  ja va 2 s.  com
    }

    File configFile = cmd.hasOption("C") ? new File(cmd.getOptionValue("C"))
            : new File(System.getProperty("user.home"), ".s-client.properties");
    logger.info("using config file = {}", configFile);
    try (ConfigurationService configuration = ConfigurationService.newLoader().loadFrom(configFile)) {
        FileUtils.cleanDirectory(configuration.getTemp());
        KeystoreHandler.newLoader().loadAndStore(configuration);
        logger.debug("{}", configuration.getStorageInfo().dumpAvailableSpace());
        try (HttpService httpService = new HttpService(configuration)) {
            httpService.start();
            if (Desktop.isDesktopSupported()) {
                Desktop.getDesktop().browse(
                        URI.create("http://localhost:" + httpService.getPort() + "/web/webclient.html"));
            }
            httpService.join();
        }
    }
}

---

From source file:example.ConfigurationsExample.java

public static void main(String[] args) {
    String jdbcPropToLoad = "prod.properties";
    CommandLineParser parser = new PosixParser();
    Options options = new Options();
    options.addOption("d", "dev", false,
            "Dev tag to launch app in dev mode. Means that app will launch embedded mckoi db.");
    try {/* w  w w .  j ava2  s .c  om*/
        CommandLine line = parser.parse(options, args);
        if (line.hasOption("d")) {
            System.err.println("App is in DEV mode");
            jdbcPropToLoad = "dev.properties";
        }
    } catch (ParseException exp) {
        System.err.println("Parsing failed.  Reason: " + exp.getMessage());
    }
    Properties p = new Properties();
    try {
        p.load(ConfigurationsExample.class.getResourceAsStream("/" + jdbcPropToLoad));
    } catch (IOException e) {
        System.err.println("Properties loading failed.  Reason: " + e.getMessage());
    }
    try {
        String clazz = p.getProperty("driver.class");
        Class.forName(clazz);
        System.out.println(" Jdbc driver loaded :" + clazz);
    } catch (ClassNotFoundException e) {
        System.err.println("Jdbc Driver class loading failed.  Reason: " + e.getMessage());
        e.printStackTrace();
    }

}

---

From source file:edu.mit.csail.sdg.alloy4.VizGUI.java

/**
 * @param args/*ww w.j  a  v  a2s.c  o m*/
 */
public static void main(String[] args) {
    // create the command line parser
    CommandLineParser parser = new PosixParser();

    // create the Options
    Options optionsArg = new Options();
    Option helpOpt = new Option("?", "help", false, "print this message");
    Option inputFileOpt = new Option("f", "file", true, "the name of the xml file to show");
    inputFileOpt.setRequired(true);

    optionsArg.addOption(helpOpt);
    optionsArg.addOption(inputFileOpt);

    CommandLine line = null;
    try {
        // parse the command line arguments
        line = parser.parse(optionsArg, args);

        if (line.hasOption(helpOpt.getOpt())) {
            // automatically generate the help statement
            HelpFormatter formatter = new HelpFormatter();
            formatter.printHelp("vizgui", optionsArg);
            return;
        }

    } catch (ParseException exp) {
        System.err.println("Unexpected exception:" + exp.getMessage());
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp("vizgui", optionsArg);
        return;
    }

    String inputFile = null;
    if (line.hasOption(inputFileOpt.getOpt())) {
        inputFile = line.getOptionValue(inputFileOpt.getOpt());
        if (inputFile == null) {
            System.err.println("Invalid input file");
        }
    }

    new edu.mit.csail.sdg.alloy4viz.VizGUI(true, inputFile, null);

}

---

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