Example usage for org.apache.commons.cli Options Options

Introduction

In this page you can find the example usage for org.apache.commons.cli Options Options.

Prototype

Options

Source Link

Usage

From source file:com.amertkara.multiplerunners.Application.java

public static void main(String[] args) {
    if (args.length == 0) {
        Options options = new Options();
        CommandLineParser parser = new DefaultParser();
        HelpFormatter formatter = new HelpFormatter();

        Option parserOpt = Option.builder("parse").desc("Parser").build();
        Option analyzerOpt = Option.builder("analyze").desc("Analyzer").build();

        options.addOption(analyzerOpt);/*from  w w  w  . j a v  a 2  s  .c  om*/
        options.addOption(parserOpt);

        formatter.printHelp("sample", options);
    } else {
        SpringApplication.run(Application.class, args);
    }
}

---

From source file:it.tizianofagni.sparkboost.BoostClassifierExe.java

public static void main(String[] args) {

    Options options = new Options();
    options.addOption("b", "binaryProblem", false,
            "Indicate if the input dataset contains a binary problem and not a multilabel one");
    options.addOption("z", "labels0based", false,
            "Indicate if the labels IDs in the dataset to classifyLibSvmWithResults are already assigned in the range [0, numLabels-1] included");
    options.addOption("l", "enableSparkLogging", false, "Enable logging messages of Spark");
    options.addOption("w", "windowsLocalModeFix", true,
            "Set the directory containing the winutils.exe command");
    options.addOption("p", "parallelismDegree", true,
            "Set the parallelism degree (default: number of available cores in the Spark runtime");

    CommandLineParser parser = new BasicParser();
    CommandLine cmd = null;//w w w.jav  a 2s .  co  m
    String[] remainingArgs = null;
    try {
        cmd = parser.parse(options, args);
        remainingArgs = cmd.getArgs();
        if (remainingArgs.length != 3)
            throw new ParseException("You need to specify all mandatory parameters");
    } catch (ParseException e) {
        System.out.println("Parsing failed.  Reason: " + e.getMessage());
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(
                BoostClassifierExe.class.getSimpleName() + " [OPTIONS] <inputFile> <inputModel> <outputFile>",
                options);
        System.exit(-1);
    }

    boolean binaryProblem = false;
    if (cmd.hasOption("b"))
        binaryProblem = true;
    boolean labels0Based = false;
    if (cmd.hasOption("z"))
        labels0Based = true;
    boolean enablingSparkLogging = false;
    if (cmd.hasOption("l"))
        enablingSparkLogging = true;

    if (cmd.hasOption("w")) {
        System.setProperty("hadoop.home.dir", cmd.getOptionValue("w"));
    }

    String inputFile = remainingArgs[0];
    String inputModel = remainingArgs[1];
    String outputFile = remainingArgs[2];

    long startTime = System.currentTimeMillis();

    // Disable Spark logging.
    if (!enablingSparkLogging) {
        Logger.getLogger("org").setLevel(Level.OFF);
        Logger.getLogger("akka").setLevel(Level.OFF);
    }

    // Create and configure Spark context.
    SparkConf conf = new SparkConf().setAppName("Spark MPBoost classifier");
    JavaSparkContext sc = new JavaSparkContext(conf);

    // Load boosting classifier from disk.
    BoostClassifier classifier = DataUtils.loadModel(sc, inputModel);

    // Get the parallelism degree.
    int parallelismDegree = sc.defaultParallelism();
    if (cmd.hasOption("p")) {
        parallelismDegree = Integer.parseInt(cmd.getOptionValue("p"));
    }

    // Classify documents available on specified input file.
    classifier.classifyLibSvm(sc, inputFile, parallelismDegree, labels0Based, binaryProblem, outputFile);
    long endTime = System.currentTimeMillis();
    System.out.println("Execution time: " + (endTime - startTime) + " milliseconds.");
}

---

From source file:com.discursive.jccook.cmdline.CliComplexExample.java

public static void main(String[] args) throws Exception {
    CommandLineParser parser = new BasicParser();

    Options options = new Options();
    options.addOption("h", "help", false, "Print this usage information");
    options.addOption("v", "verbose", false, "Print out VERBOSE debugging information");
    OptionGroup optionGroup = new OptionGroup();
    optionGroup.addOption(OptionBuilder.hasArg(true).create('f'));
    optionGroup.addOption(OptionBuilder.hasArg(true).create('m'));
    options.addOptionGroup(optionGroup);

    CommandLine commandLine = parser.parse(options, args);

    boolean verbose = false;
    String file = "";
    String mail = "";

    if (commandLine.hasOption('h')) {
        System.out.println("Help Message");
        System.exit(0);/*from w w  w  .ja v a2 s.c om*/
    }

    if (commandLine.hasOption('v')) {
        verbose = true;
    }

    if (commandLine.hasOption('f')) {
        file = commandLine.getOptionValue('f');
    } else if (commandLine.hasOption('m')) {
        mail = commandLine.getOptionValue('m');
    }

    System.exit(0);
}

---

From source file:it.tizianofagni.sparkboost.MPBoostLearnerExe.java

public static void main(String[] args) {
    Options options = new Options();
    options.addOption("b", "binaryProblem", false,
            "Indicate if the input dataset contains a binary problem and not a multilabel one");
    options.addOption("z", "labels0based", false,
            "Indicate if the labels IDs in the dataset to classifyLibSvmWithResults are already assigned in the range [0, numLabels-1] included");
    options.addOption("l", "enableSparkLogging", false, "Enable logging messages of Spark");
    options.addOption("w", "windowsLocalModeFix", true,
            "Set the directory containing the winutils.exe command");
    options.addOption("dp", "documentPartitions", true, "The number of document partitions");
    options.addOption("fp", "featurePartitions", true, "The number of feature partitions");
    options.addOption("lp", "labelPartitions", true, "The number of label partitions");

    CommandLineParser parser = new BasicParser();
    CommandLine cmd = null;//from   ww  w.  jav  a2 s. c  o m
    String[] remainingArgs = null;
    try {
        cmd = parser.parse(options, args);
        remainingArgs = cmd.getArgs();
        if (remainingArgs.length != 3)
            throw new ParseException("You need to specify all mandatory parameters");
    } catch (ParseException e) {
        System.out.println("Parsing failed.  Reason: " + e.getMessage());
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(
                MPBoostLearnerExe.class.getSimpleName() + " [OPTIONS] <inputFile> <outputFile> <numIterations>",
                options);
        System.exit(-1);
    }

    boolean binaryProblem = false;
    if (cmd.hasOption("b"))
        binaryProblem = true;
    boolean labels0Based = false;
    if (cmd.hasOption("z"))
        labels0Based = true;
    boolean enablingSparkLogging = false;
    if (cmd.hasOption("l"))
        enablingSparkLogging = true;

    if (cmd.hasOption("w")) {
        System.setProperty("hadoop.home.dir", cmd.getOptionValue("w"));
    }

    String inputFile = remainingArgs[0];
    String outputFile = remainingArgs[1];
    int numIterations = Integer.parseInt(remainingArgs[2]);

    long startTime = System.currentTimeMillis();

    // Disable Spark logging.
    if (!enablingSparkLogging) {
        Logger.getLogger("org").setLevel(Level.OFF);
        Logger.getLogger("akka").setLevel(Level.OFF);
    }

    // Create and configure Spark context.
    SparkConf conf = new SparkConf().setAppName("Spark MPBoost learner");
    JavaSparkContext sc = new JavaSparkContext(conf);

    // Create and configure learner.
    MpBoostLearner learner = new MpBoostLearner(sc);
    learner.setNumIterations(numIterations);

    if (cmd.hasOption("dp")) {
        learner.setNumDocumentsPartitions(Integer.parseInt(cmd.getOptionValue("dp")));
    }
    if (cmd.hasOption("fp")) {
        learner.setNumFeaturesPartitions(Integer.parseInt(cmd.getOptionValue("fp")));
    }
    if (cmd.hasOption("lp")) {
        learner.setNumLabelsPartitions(Integer.parseInt(cmd.getOptionValue("lp")));
    }

    // Build classifier with MPBoost learner.
    BoostClassifier classifier = learner.buildModel(inputFile, labels0Based, binaryProblem);

    // Save classifier to disk.
    DataUtils.saveModel(sc, classifier, outputFile);

    long endTime = System.currentTimeMillis();
    System.out.println("Execution time: " + (endTime - startTime) + " milliseconds.");
}

---

From source file:de.akadvh.view.Main.java

/**
 * @param args//from   ww w  .  j  av a2s  . c  o m
 */
public static void main(String[] args) {

    Options options = new Options();
    options.addOption("u", "user", true, "Benutzername");
    options.addOption("p", "pass", true, "Passwort");
    options.addOption("c", "console", false, "Consolenmodus");
    options.addOption("v", "verbose", false, "Mehr Ausgabe");
    options.addOption("m", "modul", true, "Modul");
    options.addOption("n", "noten", false, "Notenuebersicht erstellen");
    options.addOption("t", "termin", false, "Terminuebersicht (angemeldete Module) downloaden");
    options.addOption("version", false, "Version");
    options.addOption("h", "help", false, "Hilfe");

    CommandLineParser parser = new PosixParser();
    try {
        CommandLine cmd = parser.parse(options, args);

        if (cmd.hasOption("help")) {

            HelpFormatter formatter = new HelpFormatter();
            formatter.printHelp("java -jar akadvh.jar", options);
            System.exit(0);
        }

        if (cmd.hasOption("version")) {

            System.out.println("Akadvh Version: " + Akadvh.getVersion());
            System.exit(0);

        }

        if (cmd.hasOption("console")) {

            ConsoleView cv = new ConsoleView(cmd.getOptionValue("user"), cmd.getOptionValue("pass"),
                    cmd.getOptionValue("modul"), cmd.hasOption("noten"), cmd.hasOption("termin"),
                    cmd.hasOption("verbose"));

        } else {

            SwingView sv = new SwingView(cmd.getOptionValue("user"), cmd.getOptionValue("pass"));

        }

    } catch (UnrecognizedOptionException e1) {
        System.out.println(e1.getMessage());
        System.out.println("--help fuer Hilfe");
    } catch (ParseException e) {
        e.printStackTrace();
    }
}

---

From source file:boa.BoaMain.java

public static void main(final String[] args) throws IOException {
    final Options options = new Options();

    options.addOption("p", "parse", false, "parse and semantic check a Boa program (don't generate code)");
    options.addOption("c", "compile", false, "compile a Boa program");
    options.addOption("e", "execute", false, "execute a Boa program locally");
    options.addOption("g", "generate", false, "generate a Boa dataset");

    try {//w  w  w. j a va  2  s .c o  m
        if (args.length == 0) {
            printHelp(options, null);
            return;
        } else {
            final CommandLine cl = new PosixParser().parse(options, new String[] { args[0] });
            final String[] tempargs = new String[args.length - 1];
            System.arraycopy(args, 1, tempargs, 0, args.length - 1);

            if (cl.hasOption("c")) {
                boa.compiler.BoaCompiler.main(tempargs);
            } else if (cl.hasOption("p")) {
                boa.compiler.BoaCompiler.parseOnly(tempargs);
            } else if (cl.hasOption("e")) {
                boa.evaluator.BoaEvaluator.main(tempargs);
            } else if (cl.hasOption("g")) {
                boa.datagen.BoaGenerator.main(tempargs);
            }
        }
    } catch (final org.apache.commons.cli.ParseException e) {
        printHelp(options, e.getMessage());
    }
}

---

From source file:it.tizianofagni.sparkboost.AdaBoostMHLearnerExe.java

public static void main(String[] args) {
    Options options = new Options();
    options.addOption("b", "binaryProblem", false,
            "Indicate if the input dataset contains a binary problem and not a multilabel one");
    options.addOption("z", "labels0based", false,
            "Indicate if the labels IDs in the dataset to classifyLibSvmWithResults are already assigned in the range [0, numLabels-1] included");
    options.addOption("l", "enableSparkLogging", false, "Enable logging messages of Spark");
    options.addOption("w", "windowsLocalModeFix", true,
            "Set the directory containing the winutils.exe command");
    options.addOption("dp", "documentPartitions", true, "The number of document partitions");
    options.addOption("fp", "featurePartitions", true, "The number of feature partitions");
    options.addOption("lp", "labelPartitions", true, "The number of label partitions");

    CommandLineParser parser = new BasicParser();
    CommandLine cmd = null;/*w  w w.  j av  a 2  s . c om*/
    String[] remainingArgs = null;
    try {
        cmd = parser.parse(options, args);
        remainingArgs = cmd.getArgs();
        if (remainingArgs.length != 5)
            throw new ParseException("You need to specify all mandatory parameters");
    } catch (ParseException e) {
        System.out.println("Parsing failed.  Reason: " + e.getMessage());
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(AdaBoostMHLearnerExe.class.getSimpleName()
                + " [OPTIONS] <inputFile> <outputFile> <numIterations> <sparkMaster> <parallelismDegree>",
                options);
        System.exit(-1);
    }

    boolean binaryProblem = false;
    if (cmd.hasOption("b"))
        binaryProblem = true;
    boolean labels0Based = false;
    if (cmd.hasOption("z"))
        labels0Based = true;
    boolean enablingSparkLogging = false;
    if (cmd.hasOption("l"))
        enablingSparkLogging = true;

    if (cmd.hasOption("w")) {
        System.setProperty("hadoop.home.dir", cmd.getOptionValue("w"));
    }

    String inputFile = remainingArgs[0];
    String outputFile = remainingArgs[1];
    int numIterations = Integer.parseInt(remainingArgs[2]);
    String sparkMaster = remainingArgs[3];
    int parallelismDegree = Integer.parseInt(remainingArgs[4]);

    long startTime = System.currentTimeMillis();

    // Disable Spark logging.
    if (!enablingSparkLogging) {
        Logger.getLogger("org").setLevel(Level.OFF);
        Logger.getLogger("akka").setLevel(Level.OFF);
    }

    // Create and configure Spark context.
    SparkConf conf = new SparkConf().setAppName("Spark AdaBoost.MH learner");
    JavaSparkContext sc = new JavaSparkContext(conf);

    // Create and configure learner.
    AdaBoostMHLearner learner = new AdaBoostMHLearner(sc);
    learner.setNumIterations(numIterations);

    if (cmd.hasOption("dp")) {
        learner.setNumDocumentsPartitions(Integer.parseInt(cmd.getOptionValue("dp")));
    }
    if (cmd.hasOption("fp")) {
        learner.setNumFeaturesPartitions(Integer.parseInt(cmd.getOptionValue("fp")));
    }
    if (cmd.hasOption("lp")) {
        learner.setNumLabelsPartitions(Integer.parseInt(cmd.getOptionValue("lp")));
    }

    // Build classifier with MPBoost learner.
    BoostClassifier classifier = learner.buildModel(inputFile, labels0Based, binaryProblem);

    // Save classifier to disk.
    DataUtils.saveModel(sc, classifier, outputFile);

    long endTime = System.currentTimeMillis();
    System.out.println("Execution time: " + (endTime - startTime) + " milliseconds.");
}

---

From source file:com.asual.lesscss.LessEngineCli.java

public static void main(String[] args) throws LessException, URISyntaxException {
    Options cmdOptions = new Options();
    cmdOptions.addOption(LessOptions.CHARSET_OPTION, true, "Input file charset encoding. Defaults to UTF-8.");
    cmdOptions.addOption(LessOptions.COMPRESS_OPTION, false, "Flag that enables compressed CSS output.");
    cmdOptions.addOption(LessOptions.CSS_OPTION, false, "Flag that enables compilation of .css files.");
    cmdOptions.addOption(LessOptions.LESS_OPTION, true, "Path to a custom less.js for Rhino version.");
    try {/*from   ww w  .j a v  a  2s .c o  m*/
        CommandLineParser cmdParser = new GnuParser();
        CommandLine cmdLine = cmdParser.parse(cmdOptions, args);
        LessOptions options = new LessOptions();
        if (cmdLine.hasOption(LessOptions.CHARSET_OPTION)) {
            options.setCharset(cmdLine.getOptionValue(LessOptions.CHARSET_OPTION));
        }
        if (cmdLine.hasOption(LessOptions.COMPRESS_OPTION)) {
            options.setCompress(true);
        }
        if (cmdLine.hasOption(LessOptions.CSS_OPTION)) {
            options.setCss(true);
        }
        if (cmdLine.hasOption(LessOptions.LESS_OPTION)) {
            options.setLess(new File(cmdLine.getOptionValue(LessOptions.LESS_OPTION)).toURI().toURL());
        }
        LessEngine engine = new LessEngine(options);
        if (System.in.available() != 0) {
            BufferedReader in = new BufferedReader(new InputStreamReader(System.in));
            StringWriter sw = new StringWriter();
            char[] buffer = new char[1024];
            int n = 0;
            while (-1 != (n = in.read(buffer))) {
                sw.write(buffer, 0, n);
            }
            String src = sw.toString();
            if (!src.isEmpty()) {
                System.out.println(engine.compile(src, null, options.isCompress()));
                System.exit(0);
            }
        }
        String[] files = cmdLine.getArgs();
        if (files.length == 1) {
            System.out.println(engine.compile(new File(files[0]), options.isCompress()));
            System.exit(0);
        }
        if (files.length == 2) {
            engine.compile(new File(files[0]), new File(files[1]), options.isCompress());
            System.exit(0);
        }

    } catch (IOException ioe) {
        System.err.println("Error opening input file.");
    } catch (ParseException pe) {
        System.err.println("Error parsing arguments.");
    }
    String[] paths = LessEngine.class.getProtectionDomain().getCodeSource().getLocation().toURI().getPath()
            .split(File.separator);
    HelpFormatter formatter = new HelpFormatter();
    formatter.printHelp("java -jar " + paths[paths.length - 1] + " input [output] [options]", cmdOptions);
    System.exit(1);
}

---

From source file:com.genentech.chemistry.openEye.apps.SDFSubRMSD.java

public static void main(String... args) throws IOException { // create command line Options object
    Options options = new Options();
    Option opt = new Option("in", true, "input file oe-supported");
    opt.setRequired(true);/*from   w w w.  ja v a  2s. com*/
    options.addOption(opt);

    opt = new Option("out", true, "output file oe-supported");
    opt.setRequired(false);
    options.addOption(opt);

    opt = new Option("fragFile", true, "file with single 3d substructure query");
    opt.setRequired(false);
    options.addOption(opt);

    opt = new Option("isMDL", false,
            "if given the fragFile is suposed to be an mdl query file, query features are supported.");
    opt.setRequired(false);
    options.addOption(opt);

    CommandLineParser parser = new PosixParser();
    CommandLine cmd = null;
    try {
        cmd = parser.parse(options, args);
    } catch (Exception e) {
        System.err.println(e.getMessage());
        exitWithHelp(options);
    }
    args = cmd.getArgs();

    if (cmd.hasOption("d")) {
        System.err.println("Start debugger and press return:");
        new BufferedReader(new InputStreamReader(System.in)).readLine();
    }

    String inFile = cmd.getOptionValue("in");
    String outFile = cmd.getOptionValue("out");
    String fragFile = cmd.getOptionValue("fragFile");

    // read fragment
    OESubSearch ss;
    oemolistream ifs = new oemolistream(fragFile);
    OEMolBase mol;
    if (!cmd.hasOption("isMDL")) {
        mol = new OEGraphMol();
        oechem.OEReadMolecule(ifs, mol);
        ss = new OESubSearch(mol, OEExprOpts.AtomicNumber, OEExprOpts.BondOrder);
    } else {
        int aromodel = OEIFlavor.Generic.OEAroModelOpenEye;
        int qflavor = ifs.GetFlavor(ifs.GetFormat());
        ifs.SetFlavor(ifs.GetFormat(), (qflavor | aromodel));
        int opts = OEMDLQueryOpts.Default | OEMDLQueryOpts.SuppressExplicitH;
        OEQMol qmol = new OEQMol();
        oechem.OEReadMDLQueryFile(ifs, qmol, opts);
        ss = new OESubSearch(qmol);
        mol = qmol;
    }

    double nSSatoms = mol.NumAtoms();
    double sssCoords[] = new double[mol.GetMaxAtomIdx() * 3];
    mol.GetCoords(sssCoords);
    mol.Clear();
    ifs.close();

    if (!ss.IsValid())
        throw new Error("Invalid query " + args[0]);

    ifs = new oemolistream(inFile);
    oemolostream ofs = new oemolostream(outFile);
    int count = 0;

    while (oechem.OEReadMolecule(ifs, mol)) {
        count++;
        double rmsd = Double.MAX_VALUE;
        double molCoords[] = new double[mol.GetMaxAtomIdx() * 3];
        mol.GetCoords(molCoords);

        for (OEMatchBase mb : ss.Match(mol, false)) {
            double r = 0;
            for (OEMatchPairAtom mp : mb.GetAtoms()) {
                OEAtomBase asss = mp.getPattern();
                double sx = sssCoords[asss.GetIdx() * 3];
                double sy = sssCoords[asss.GetIdx() * 3];
                double sz = sssCoords[asss.GetIdx() * 3];

                OEAtomBase amol = mp.getTarget();
                double mx = molCoords[amol.GetIdx() * 3];
                double my = molCoords[amol.GetIdx() * 3];
                double mz = molCoords[amol.GetIdx() * 3];

                r += Math.sqrt((sx - mx) * (sx - mx) + (sy - my) * (sy - my) + (sz - mz) * (sz - mz));
            }
            r /= nSSatoms;
            rmsd = Math.min(rmsd, r);
        }

        if (rmsd != Double.MAX_VALUE)
            oechem.OESetSDData(mol, "SSSrmsd", String.format("%.3f", rmsd));

        oechem.OEWriteMolecule(ofs, mol);
        mol.Clear();
    }

    ifs.close();
    ofs.close();

    mol.delete();
    ss.delete();
}

---

From source file:com.google.cloud.trace.v1.TraceServiceSmokeTest.java

public static void main(String args[]) {
    Logger.getLogger("").setLevel(Level.WARNING);
    try {//w  w w  . ja va  2s.  c  om
        Options options = new Options();
        options.addOption("h", "help", false, "show usage");
        options.addOption(Option.builder().longOpt("project_id").desc("Project id").hasArg()
                .argName("PROJECT-ID").required(true).build());
        CommandLine cl = (new DefaultParser()).parse(options, args);
        if (cl.hasOption("help")) {
            HelpFormatter formater = new HelpFormatter();
            formater.printHelp("TraceServiceSmokeTest", options);
        }
        executeNoCatch(cl.getOptionValue("project_id"));
        System.out.println("OK");
    } catch (Exception e) {
        System.err.println("Failed with exception:");
        e.printStackTrace(System.err);
        System.exit(1);
    }
}

---

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