List of usage examples for javax.xml.datatype XMLGregorianCalendar getMonth
public abstract int getMonth();
From source file:edu.harvard.i2b2.explorer.ui.MainComposite.java
/** * @param args/* ww w. j av a 2s.co m*/ */ @SuppressWarnings("serial") protected Control createContents(Composite parent) { GridLayout topGridLayout = new GridLayout(1, false); topGridLayout.numColumns = 1; topGridLayout.marginWidth = 2; topGridLayout.marginHeight = 2; setLayout(topGridLayout); Composite oTreeComposite = new Composite(this, SWT.NONE); oTreeComposite.setLayout(new FillLayout(SWT.VERTICAL)); GridData gridData2 = new GridData(); gridData2.horizontalAlignment = GridData.FILL; gridData2.verticalAlignment = GridData.FILL; gridData2.grabExcessHorizontalSpace = true; gridData2.grabExcessVerticalSpace = true; oTreeComposite.setLayoutData(gridData2); // the horizontal sash form SashForm horizontalForm = new SashForm(oTreeComposite, SWT.HORIZONTAL); horizontalForm.setOrientation(SWT.HORIZONTAL); horizontalForm.setLayout(new GridLayout()); if (drawLeft) { // left sash form SashForm leftVerticalForm = new SashForm(horizontalForm, SWT.VERTICAL); leftVerticalForm.setOrientation(SWT.VERTICAL); leftVerticalForm.setLayout(new GridLayout()); if (bWantStatusLine) { slm.createControl(this, SWT.NULL); } slm.setMessage("i2b2 Explorer Version 2.0"); slm.update(true); // Create the tab folder final TabFolder oTabFolder = new TabFolder(leftVerticalForm, SWT.NONE); // Create each tab and set its text, tool tip text, // image, and control TabItem oTreeTab = new TabItem(oTabFolder, SWT.NONE); oTreeTab.setText("Concept trees"); oTreeTab.setToolTipText("Hierarchically organized patient characteristics"); oTreeTab.setControl(getConceptTreeTabControl(oTabFolder)); // Select the first tab (index is zero-based) oTabFolder.setSelection(0); // Create the tab folder final TabFolder queryRunFolder = new TabFolder(leftVerticalForm, SWT.NONE); TabItem previousRunTab = new TabItem(queryRunFolder, SWT.NONE); previousRunTab.setText("Patient Sets and Previous Queries"); previousRunTab.setToolTipText("Patient Sets & Previous Queries"); final Composite runComposite = new Composite(queryRunFolder, SWT.EMBEDDED); previousRunTab.setControl(runComposite); /* Create and setting up frame */ ////for mac fix //if ( System.getProperty("os.name").toLowerCase().startsWith("mac")) //SWT_AWT.embeddedFrameClass = "sun.lwawt.macosx.CViewEmbeddedFrame"; Frame runFrame = SWT_AWT.new_Frame(runComposite); Panel runPanel = new Panel(new BorderLayout()); try { UIManager.setLookAndFeel(UIManager.getSystemLookAndFeelClassName()); } catch (Exception e) { log.debug("Error setting native LAF: " + e); } runFrame.add(runPanel); JRootPane runRoot = new JRootPane(); runPanel.add(runRoot); // Select the first tab (index is zero-based) queryRunFolder.setSelection(0); } SashForm verticalForm = new SashForm(horizontalForm, SWT.VERTICAL); verticalForm.setOrientation(SWT.VERTICAL); verticalForm.setLayout(new GridLayout()); // put a tab folder in it... tabFolder = new TabFolder(verticalForm, SWT.NONE); Composite patientNumsComposite = new Composite(verticalForm, SWT.NONE); GridData patientNumData = new GridData(GridData.HORIZONTAL_ALIGN_FILL); patientNumData.grabExcessHorizontalSpace = true; patientNumsComposite.setLayoutData(patientNumData); patientNumsComposite.setLayout(null); Label patientset = new Label(patientNumsComposite, SWT.NONE); patientset.setText("Patient Set: "); patientset.setBounds(5, 9, 60, 22); patientSetText = new Text(patientNumsComposite, SWT.SINGLE | SWT.BORDER); patientSetText.setText(""); patientSetText.setEditable(false); patientSetText.setBounds(70, 5, 300, 35); leftArrowButton = new Button(patientNumsComposite, SWT.PUSH); leftArrowButton.setText("<<<"); leftArrowButton.setEnabled(false); leftArrowButton.setBounds(380, 5, 38, 22); leftArrowButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { runMode = -1; ConceptTableModel i2b2Model = (ConceptTableModel) table.getModel(); i2b2Model.fillDataFromTable(rowData); if (rowData.size() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("The set up table is empty."); mBox.open(); return; } String patientSetStr = patientSetText.getText(); if (patientSetStr.equals("") && !isAll) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("Please set a patient set or choose all datamart option."); mBox.open(); return; } if (tabFolder.getSelectionIndex() == 1) { java.awt.EventQueue.invokeLater(new Runnable() { public void run() { DestroyMiniVisualization(oAwtContainer); } }); } else if (tabFolder.getSelectionIndex() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(1); } }); } if (patientSetStr.equalsIgnoreCase("All")) { int minPatient = 0; try { String minText = patientMinNumText.getText(); minPatient = Integer.parseInt(minText); } catch (Exception e1) { minPatient = -1; } int maxPatient = 0; try { maxPatient = Integer.parseInt(patientMaxNumText.getText()); } catch (Exception e2) { maxPatient = -1; } PerformVisualizationQuery(oAwtContainer, "All", minPatient, maxPatient, bDisplayAllData); } else { int min = Integer.parseInt(patientMinNumText.getText()); int max = Integer.parseInt(patientMaxNumText.getText()); int start = new Integer(patientMinNumText.getText()).intValue(); int inc = new Integer(patientMaxNumText.getText()).intValue(); if (start - inc <= 1) { leftArrowButton.setEnabled(false); } if (start <= patientSetSize) { rightArrowButton.setEnabled(true); } else { rightArrowButton.setEnabled(false); } //if ((start - inc) > 1) { //patientMinNumText.setText("" + (start - inc)); //} else { //patientMinNumText.setText("1"); //} PerformVisualizationQuery(oAwtContainer, patientRefId, min - max, max - 1, bDisplayAllData); } } }); final Label patNum1 = new Label(patientNumsComposite, SWT.NONE); patNum1.setText(" start: "); patNum1.setBounds(425, 9, 31, 20); patientMinNumText = new Text(patientNumsComposite, SWT.SINGLE | SWT.BORDER); patientMinNumText.setText("1"); patientMinNumText.setBounds(460, 5, 45, 22); final Label patNum2 = new Label(patientNumsComposite, SWT.NONE); patNum2.setText("increment:"); patNum2.setBounds(515, 9, 57, 20); patientMaxNumText = new Text(patientNumsComposite, SWT.SINGLE | SWT.BORDER); patientMaxNumText.setText("10"); patientMaxNumText.setBounds(572, 5, 45, 22); rightArrowButton = new Button(patientNumsComposite, SWT.PUSH); rightArrowButton.setText(">>>"); rightArrowButton.setEnabled(false); rightArrowButton.setBounds(626, 5, 38, 20); rightArrowButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { runMode = 1; ConceptTableModel i2b2Model = (ConceptTableModel) table.getModel(); i2b2Model.fillDataFromTable(rowData); if (rowData.size() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("The set up table is empty."); mBox.open(); return; } String patientSetStr = patientSetText.getText(); if (patientSetStr.equals("") && !isAll) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("Please set a patient set or choose all datamart option."); mBox.open(); return; } if (tabFolder.getSelectionIndex() == 1) { java.awt.EventQueue.invokeLater(new Runnable() { public void run() { DestroyMiniVisualization(oAwtContainer); } }); } else if (tabFolder.getSelectionIndex() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(1); } }); } if (patientSetStr.equalsIgnoreCase("All")) { int minPatient = 0; try { String minText = patientMinNumText.getText(); minPatient = Integer.parseInt(minText); } catch (Exception e1) { minPatient = -1; } int maxPatient = 0; try { maxPatient = Integer.parseInt(patientMaxNumText.getText()); } catch (Exception e2) { maxPatient = -1; } PerformVisualizationQuery(oAwtContainer, "All", minPatient, maxPatient, bDisplayAllData); } else { int min = Integer.parseInt(patientMinNumText.getText()); int max = Integer.parseInt(patientMaxNumText.getText()); int start = new Integer(patientMinNumText.getText()).intValue(); int inc = new Integer(patientMaxNumText.getText()).intValue(); if (start + inc > patientSetSize) { rightArrowButton.setEnabled(false); } //patientMinNumText.setText("" + (start + inc)); leftArrowButton.setEnabled(true); PerformVisualizationQuery(oAwtContainer, patientRefId, min, max - 1, bDisplayAllData); } // getDisplay().syncExec(new Runnable() { // public void run() { // if(returnedNumber >= 0) { // setIncrementNumber(returnedNumber); // MessageBox mBox = new MessageBox(getShell(), // SWT.ICON_INFORMATION // | SWT.OK); // mBox.setText("Please Note ..."); // mBox.setMessage(/*"Can't return all the requested "+ // requestIndex+" patients, */"Only "+returnedNumber+" patients // returned"); // mBox.open(); // } // } // }); } }); addListener(SWT.Resize, new Listener() { public void handleEvent(Event event) { int w = getBounds().width; patientSetText.setBounds(70, 5, w - 357, 24); leftArrowButton.setBounds(w - 281, 5, 38, 24); patNum1.setBounds(w - 239, 9, 31, 24); patientMinNumText.setBounds(w - 204, 5, 45, 24); patNum2.setBounds(w - 149, 9, 57, 24); patientMaxNumText.setBounds(w - 92, 5, 45, 24); rightArrowButton.setBounds(w - 42, 5, 37, 24); } }); verticalForm.setWeights(new int[] { 25, 3 }); // Item 1: a Text Table TabItem item1 = new TabItem(tabFolder, SWT.NONE); item1.setText("Create model for Timeline"); Composite oModelComposite = new Composite(tabFolder, SWT.NONE); item1.setControl(oModelComposite); GridLayout gridLayout = new GridLayout(2, false); // gridLayout.marginHeight = 0; // gridLayout.marginWidth = 0; // gridLayout.verticalSpacing = 0; // gridLayout.horizontalSpacing = 0; gridLayout.marginTop = 2; gridLayout.marginLeft = 0; gridLayout.marginBottom = 2; gridLayout.verticalSpacing = 1; gridLayout.horizontalSpacing = 1; oModelComposite.setLayout(gridLayout); oModelQueryComposite = new FramedComposite(oModelComposite, SWT.SHADOW_NONE); // GridLayout gLq = new GridLayout(25, false); oModelQueryComposite.setLayout(new GridLayout(25, false)); oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); GridData oModelQueryButtonGridData = new GridData(GridData.FILL_HORIZONTAL); oModelQueryButtonGridData.grabExcessHorizontalSpace = false; oModelQueryButtonGridData.horizontalSpan = 2; oModelQueryButtonGridData.verticalAlignment = SWT.CENTER; oModelQueryButtonGridData.verticalIndent = 5; oModelQueryComposite.setLayoutData(oModelQueryButtonGridData); queryNamemrnlistText = new Label(oModelQueryComposite, SWT.NONE); queryNamemrnlistText.setLayoutData(new GridData(GridData.FILL_HORIZONTAL)); queryNamemrnlistText.setText("Query Name: "); // queryNamemrnlistText.setBounds(5, 4, 600, 20); queryNamemrnlistText.addMouseTrackListener(new MouseTrackListener() { public void mouseEnter(MouseEvent arg0) { oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } public void mouseExit(MouseEvent arg0) { oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); } public void mouseHover(MouseEvent arg0) { oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } }); oModelQueryComposite.addMouseMoveListener(new MouseMoveListener() { public void mouseMove(MouseEvent arg0) { } }); oModelQueryComposite.addDragDetectListener(new DragDetectListener() { public void dragDetected(DragDetectEvent arg0) { } }); Composite oGroupComposite = new Composite(oModelComposite, SWT.NONE); // GridLayout gLq = new GridLayout(25, false); oGroupComposite.setLayout(gridLayout); GridData oGroupGridData = new GridData(GridData.HORIZONTAL_ALIGN_FILL | GridData.VERTICAL_ALIGN_FILL); oGroupGridData.grabExcessHorizontalSpace = true; oGroupGridData.grabExcessVerticalSpace = true; oGroupGridData.verticalIndent = 1; oGroupGridData.verticalSpan = GridData.VERTICAL_ALIGN_FILL; // oGroupGridData.verticalAlignment = GridData.VERTICAL_ALIGN_FILL; oGroupComposite.setLayoutData(oGroupGridData); oModelGroupComposite = new FramedComposite(oGroupComposite, SWT.SHADOW_NONE); // GridLayout gLq = new GridLayout(25, false); oModelGroupComposite.setLayout(new GridLayout(25, false)); GridData oModelGroupButtonGridData = new GridData(GridData.FILL_HORIZONTAL); oModelGroupButtonGridData.grabExcessHorizontalSpace = false; oModelGroupButtonGridData.horizontalSpan = 2; oModelGroupButtonGridData.verticalAlignment = SWT.CENTER; oModelGroupButtonGridData.verticalIndent = 5; oModelGroupComposite.setLayoutData(oModelGroupButtonGridData); // GridData gdAdd = new GridData(GridData.FILL_HORIZONTAL); GridData gdDel1 = new GridData(GridData.FILL_HORIZONTAL); groupNameText = new Label(oModelGroupComposite, SWT.NONE); gdDel1.horizontalSpan = 4; groupNameText.setLayoutData(gdDel1); groupNameText.setText("Panel Name: "); // groupNameText.setBounds(80, 8, 400, 24); // groupNameText.setAlignment(SWT.CENTER); // createDragSource(queryNamemrnlistText); // createDropTarget(queryNamemrnlistText); groupNameText.addMouseTrackListener(new MouseTrackListener() { public void mouseEnter(MouseEvent arg0) { oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } public void mouseExit(MouseEvent arg0) { oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); } public void mouseHover(MouseEvent arg0) { oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } }); // put a table in tabItem1... table = new KTable(oGroupComposite, SWT.V_SCROLL | SWT.H_SCROLL | SWT.BORDER); table.setFocus(); table.setBackground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_WHITE)); GridData tableGridData = new GridData(SWT.FILL, SWT.FILL, true, true); tableGridData.verticalIndent = 5; table.setLayoutData(tableGridData); table.setRowSelectionMode(true); // table.setMultiSelectionMode(true); // table.setModel(new KTableForModel()); table.setModel(new ConceptTableModel()); // table.getModel().setColumnWidth(0, oModelComposite.getBounds().width // - 35); table.addCellSelectionListener(new KTableCellSelectionListener() { public void cellSelected(int col, int row, int statemask) { log.debug("Cell [" + col + ";" + row + "] selected."); // System.out.println("Cell [" + col + ";" + row + // "] selected."); table.selectedRow = row; table.selectedColumn = col; } public void fixedCellSelected(int col, int row, int statemask) { log.debug("Header [" + col + ";" + row + "] selected."); // System.out.println("Header [" + col + ";" + row + // "] selected."); } }); Transfer[] types = new Transfer[] { TextTransfer.getInstance() }; // create drag source /* * DragSource source = new DragSource(queryNamemrnlistText, * DND.DROP_COPY); source.setTransfer(types); source.addDragListener(new * DragSourceAdapter() { * * @Override public void dragSetData(DragSourceEvent event) { * //DragSource ds = (DragSource) event.widget; StringWriter strWriter = * new StringWriter(); DndType dndType = new DndType(); * edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory pdoFactory * = new edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory(); * PanelType panelType = new PanelType(); * * //get table rows and fill the panel object for(int i=0; i<3; i++) { * ItemType itemType = new ItemType(); * panelType.getItem().add(itemType); * * dndType.getAny().add(pdoFactory.createPanel(panelType)); * edu.harvard.i2b2.crcxmljaxb.datavo.dnd.ObjectFactory dndFactory = new * edu.harvard.i2b2.crcxmljaxb.datavo.dnd.ObjectFactory(); try { * ExplorerJAXBUtil * .getJAXBUtil().marshaller(dndFactory.createPluginDragDrop(dndType), * strWriter); } catch(JAXBUtilException e) { e.printStackTrace(); } * * //put the data into the event event.data = strWriter.toString(); } * * * }); */ Composite oModelAddDelButtonComposite = new Composite(oModelComposite, SWT.NONE); GridLayout gL = new GridLayout(25, false); oModelAddDelButtonComposite.setLayout(gL); GridData oModelAddDelButtonGridData = new GridData(GridData.FILL_HORIZONTAL);// HORIZONTAL_ALIGN_FILL);// | // GridData.VERTICAL_ALIGN_FILL); oModelAddDelButtonGridData.grabExcessHorizontalSpace = false; oModelAddDelButtonGridData.horizontalSpan = 2; oModelAddDelButtonComposite.setLayoutData(oModelAddDelButtonGridData); // GridData gdAdd = new GridData(GridData.FILL_HORIZONTAL); GridData gdDel = new GridData(GridData.FILL_HORIZONTAL); Button deleteArrowButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); gdDel.horizontalSpan = 4; deleteArrowButton.setLayoutData(gdDel); deleteArrowButton.setText("Delete From List"); deleteArrowButton.addSelectionListener(new SelectionAdapter() { @SuppressWarnings("unchecked") public void widgetSelected(SelectionEvent event) { curRowNumber = 0; ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); int[] selectedRow = table.getRowSelection(); m_Model.fillDataFromTable(rowData); if ((selectedRow != null) && (selectedRow.length > 0)) { String conceptName = (String) m_Model.getContentAt(1, selectedRow[0]); if (conceptName.equals("Encounter Range Line")) { } else if (conceptName.equals("Vital Status Line")) { } int rowNumber = new Integer((String) (m_Model.getContentAt(0, selectedRow[0]))).intValue(); int rid = selectedRow[0]; ArrayList list = (ArrayList) rowData.get(rowNumber - 1); for (int i = 0; i < list.size(); i++) { ConceptTableRow tr = (ConceptTableRow) list.get(i); if (tr.rowId == rid) { list.remove(i); break; } } if (list.size() == 0) { rowData.remove(rowNumber - 1); } curRowNumber = rowData.size(); resetRowNumber(); // m_Model.deleteRow(selectedRow[0]); ((ConceptTableModel) table.getModel()).deleteAllRows(); ((ConceptTableModel) table.getModel()).populateTable(rowData); /* * int newRow = 0; for(int i=0; i<rowData.size(); i++) { * ArrayList alist = (ArrayList) rowData.get(i); for(int * j=0; j<alist.size(); j++) { TableRow r = (TableRow) * alist.get(j); newRow++; r.rowId = newRow; * table.getModel().setContentAt(0, newRow, new * Integer(r.rowNumber).toString()); * table.getModel().setContentAt(1, newRow, r.conceptName); * table.getModel().setContentAt(2, newRow, r.valueType); * table.getModel().setContentAt(3, newRow, r.valueText); * table.getModel().setContentAt(4, newRow, r.height); * table.getModel().setContentAt(5, newRow, r.color); * table.getModel().setContentAt(6, newRow, r.conceptXml); } * } */ table.redraw(); queryNamemrnlistText.setText("Query Name: "); groupNameText.setText("Panel Name: "); } } }); Button deleteAllButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); gdDel = new GridData(GridData.FILL_HORIZONTAL); gdDel.horizontalSpan = 4; deleteAllButton.setLayoutData(gdDel); deleteAllButton.setText("Delete All "); deleteAllButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); m_Model.deleteAllRows(); curRowNumber = 0; rowData.clear(); queryNamemrnlistText.setText("Query Name: "); groupNameText.setText("Panel Name: "); table.redraw(); } }); Button putInOrderButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); gdDel = new GridData(GridData.FILL_HORIZONTAL); gdDel.horizontalSpan = 4; putInOrderButton.setLayoutData(gdDel); putInOrderButton.setText("Put In Order "); putInOrderButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); curRowNumber = 0; m_Model.fillDataFromTable(rowData); Collections.sort(rowData, new Comparator<Object>() { @SuppressWarnings("unchecked") public int compare(Object o1, Object o2) { int i1 = ((ConceptTableRow) ((ArrayList) o1).get(0)).rowNumber; int i2 = ((ConceptTableRow) ((ArrayList) o2).get(0)).rowNumber; if (i1 > i2) { return 1; } else if (i1 < i2) { return -1; } else { return 0; } } }); m_Model.deleteAllRows(); m_Model.populateTable(rowData); table.redraw(); } }); Button upArrowButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); upArrowButton.setText("Move Up"); upArrowButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); int[] selectedRow = table.getRowSelection(); curRowNumber = 0; // KTableI2B2Model m_Model = (KTableI2B2Model) table.getModel(); // int[] selectedRow = table.getRowSelection(); m_Model.fillDataFromTable(rowData); int index = new Integer((String) (m_Model.getContentAt(0, selectedRow[0]))).intValue() - 1; if (index < 1) { return; } if ((selectedRow != null) && (selectedRow.length > 0)) { // m_Model.moveRow(selectedRow[0], selectedRow[0] -1); ArrayList<ConceptTableRow> list = rowData.get(index); rowData.remove(index); rowData.add(index - 1, list); resetRowNumber(); m_Model.populateTable(rowData); } table.setSelection(0, selectedRow[0] - 1, true); table.redraw(); } }); Button downArrowButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); downArrowButton.setText("Move Down"); downArrowButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); int[] selectedRow = table.getRowSelection(); curRowNumber = 0; // KTableI2B2Model m_Model = (KTableI2B2Model) table.getModel(); // int[] selectedRow = table.getRowSelection(); m_Model.fillDataFromTable(rowData); int index = new Integer((String) (m_Model.getContentAt(0, selectedRow[0]))).intValue() - 1; if (index == (rowData.size() - 1)) { return; } if ((selectedRow != null) && (selectedRow.length > 0)) { // m_Model.moveRow(selectedRow[0], selectedRow[0] -1); ArrayList<ConceptTableRow> list = rowData.get(index); rowData.remove(index); rowData.add(index + 1, list); resetRowNumber(); m_Model.populateTable(rowData); } table.setSelection(0, selectedRow[0] + 1, true); table.redraw(); } }); Composite oModelCheckButtonComposite = new Composite(oModelComposite, SWT.NONE); GridLayout gL1 = new GridLayout(); gL1.numColumns = 20; oModelCheckButtonComposite.setLayout(gL1); GridData oModelCheckButtonGridData = new GridData(); oModelCheckButtonGridData.horizontalSpan = 4; oModelCheckButtonGridData.verticalAlignment = GridData.FILL; oModelCheckButtonGridData.grabExcessHorizontalSpace = true; oModelCheckButtonGridData.horizontalAlignment = GridData.FILL; oModelCheckButtonComposite.setLayoutData(oModelCheckButtonGridData); Button displayOrNotButton = new Button(oModelCheckButtonComposite, SWT.CHECK); displayOrNotButton.setText("Display concepts with no data"); displayOrNotButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { // do something here- return null bDisplayAllData = !bDisplayAllData; } }); Button displayDemographicsOrNotButton = new Button(oModelCheckButtonComposite, SWT.CHECK); displayDemographicsOrNotButton.setText("Display patient demographics"); if ((System.getProperty("applicationName") != null) && System.getProperty("applicationName").equals("BIRN")) { displayDemographicsOrNotButton.setSelection(false); displayDemographicsOrNotButton.setEnabled(false); bDisplayDemographics = false; } else if ((System.getProperty("applicationName") == null) || System.getProperty("applicationName").equals("i2b2")) { displayDemographicsOrNotButton.setSelection(true); } displayDemographicsOrNotButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { bDisplayDemographics = !bDisplayDemographics; } }); { label2 = new Label(oModelCheckButtonComposite, SWT.NONE); GridData label2LData = new GridData(); label2LData.horizontalIndent = 10; label2.setLayoutData(label2LData); label2.setText("Filter:"); } { filterCCombo = new CCombo(oModelCheckButtonComposite, SWT.BORDER); filterCCombo.setBackground(SWTResourceManager.getColor(255, 255, 255)); filterCCombo.setEditable(false); filterCCombo.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent evt) { System.out.println("filterCCombo.widgetSelected, event=" + evt); int index = filterCCombo.getSelectionIndex(); if (index == 0) { filter = "none"; } else if (index == 1) { filter = "max"; } else if (index == 2) { filter = "min"; } else if (index == 3) { filter = "first"; } else if (index == 4) { filter = "last"; } } }); filterCCombo.add("none"); filterCCombo.add("max"); filterCCombo.add("min"); filterCCombo.add("first"); filterCCombo.add("last"); filterCCombo.select(0); } { //combo1 = new Combo(oModelCheckButtonComposite, SWT.NONE); } { //label1 = new Label(oModelCheckButtonComposite, SWT.NONE); //label1.setText("Filter: "); } /*{ filterCombo = new Combo(oModelCheckButtonComposite, SWT.NONE); GridData filterComboLData = new GridData(); filterComboLData.widthHint = 28; filterComboLData.heightHint = 21; filterCombo.setLayoutData(filterComboLData); filterCombo.add("max"); filterCombo.add("min"); filterCombo.add("first"); filterCombo.add("last"); filterCombo.select(0); //filterCombo.set; //filterCombo.setText("combo1"); }*/ if (UserInfoBean.getInstance().getCellDataUrl("identity") != null) { Composite oPatientSetComposite = new Composite(oModelComposite, SWT.NONE); GridData patientSetData = new GridData(GridData.HORIZONTAL_ALIGN_FILL); patientSetData.grabExcessHorizontalSpace = true; oPatientSetComposite.setLayoutData(patientSetData); oPatientSetComposite.setLayout(null); Label mrnlabel = new Label(oPatientSetComposite, SWT.NONE); mrnlabel.setText("MRN site:"); mrnlabel.setBounds(5, 9, 50, 20); final Combo siteCombo = new Combo(oPatientSetComposite, SWT.NULL); siteCombo.add("BWH"); siteCombo.add("MGH"); siteCombo.setBounds(57, 5, 60, 20); siteCombo.select(1); Label mrnNumber = new Label(oPatientSetComposite, SWT.NONE); mrnNumber.setText("number:"); mrnNumber.setBounds(121, 9, 40, 20); mrnlistText = new Text(oPatientSetComposite, SWT.SINGLE | SWT.BORDER); mrnlistText.setBounds(164, 5, 150, 20); mrnlistText.setText(""); Button runButton = new Button(oPatientSetComposite, SWT.PUSH); runButton.setText("Search By MRN"); runButton.setBounds(315, 5, 85, 23); runButton.addSelectionListener(new SelectionAdapter() { @SuppressWarnings("unchecked") public void widgetSelected(SelectionEvent event) { String mrns = mrnlistText.getText(); if (mrns.equals("")) { return; } String[] mrnArray = mrns.split(","); int[] idlist = new int[mrnArray.length]; String username = UserInfoBean.getInstance().getUserName(); String password = UserInfoBean.getInstance().getUserPassword(); // log.debug("User name: "+username+" password: "+password); String site = siteCombo.getText(); for (int i = 0; i < mrnArray.length; i++) { // String[] tmps = new String[2]; String tmp = mrnArray[i].replaceAll(" ", ""); // tmps = tmp.split(":"); String queryStr = "<?xml version=\"1.0\" standalone=\"yes\"?>\n" + "<search_by_local>" + "<match_id site=\"" + site.toUpperCase()/* EMPI */ + "\">" + tmp/* 100016900 */ + "</match_id>\n" + "</search_by_local>"; String resultStr = QueryClient.query(queryStr, username, password); log.debug(queryStr); log.debug(resultStr); SAXBuilder parser = new SAXBuilder(); String masterID = null; java.io.StringReader xmlStringReader = new java.io.StringReader(resultStr); try { org.jdom.Document tableDoc = parser.build(xmlStringReader); org.jdom.Element tableXml = tableDoc.getRootElement(); Element responseXml = (Element) tableXml.getChild("person_list"); // Element mrnXml = (Element) // responseXml.getChild("MRN"); java.util.List listChildren = responseXml.getChildren(); if (listChildren.isEmpty()) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("No master id found"); mBox.open(); return; } Element masterXml = (Element) responseXml.getChild("master_record"); masterID = masterXml.getAttributeValue("id"); log.debug("Patient id: " + masterID); idlist[i] = new Integer(masterID).intValue(); log.debug("MRN: " + site + "-" + tmp); } catch (Exception e1) { e1.printStackTrace(); } } if (tabFolder.getSelectionIndex() == 1) { java.awt.EventQueue.invokeLater(new Runnable() { public void run() { DestroyMiniVisualization(oAwtContainer); } }); } else if (tabFolder.getSelectionIndex() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(1); } }); } PerformVisualizationQuery(oAwtContainer, idlist, bDisplayAllData); } }); } DropTarget targetLable = new DropTarget(oModelQueryComposite, DND.DROP_COPY); targetLable.setTransfer(types); targetLable.addDropListener(new DropTargetAdapter() { @Override public void dragLeave(DropTargetEvent event) { super.dragLeave(event); oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); } public void dragEnter(DropTargetEvent event) { event.detail = DND.DROP_COPY; oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } @SuppressWarnings("unchecked") public void drop(DropTargetEvent event) { if (event.data == null) { event.detail = DND.DROP_NONE; return; } try { SAXBuilder parser = new SAXBuilder(); String xmlContent = (String) event.data; java.io.StringReader xmlStringReader = new java.io.StringReader(xmlContent); org.jdom.Document tableDoc = parser.build(xmlStringReader); org.jdom.Element tableXml = tableDoc.getRootElement().getChild("concepts", Namespace.getNamespace("http://www.i2b2.org/xsd/cell/ont/1.1/")); if (tableXml != null) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; return; } boolean isQuery = false; if (tableXml == null) tableXml = tableDoc.getRootElement().getChild("query_master", Namespace.getNamespace("http://www.i2b2.org/xsd/cell/crc/psm/1.1/")); if (tableXml != null) isQuery = true; else { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; return; } if (isQuery) { ArrayList<QueryModel> nodeXmls = new ArrayList<QueryModel>(); try { JAXBUtil jaxbUtil = ExplorerJAXBUtil.getJAXBUtil(); QueryMasterData ndata = new QueryMasterData(); ndata.name(tableXml.getChildText("name")); queryNamemrnlistText.setText("Query Name: " + ndata.name()); groupNameText.setText("Panel Name: All items of Query " + ndata.name()); ndata.xmlContent(null); ndata.id(tableXml.getChildTextTrim("query_master_id")); ndata.userId(tableXml.getChildTextTrim("user_id")); String xmlcontent = null; String xmlrequest = null; xmlrequest = ndata.writeDefinitionQueryXML(); lastRequestMessage(xmlrequest); if (System.getProperty("webServiceMethod").equals("SOAP")) xmlcontent = PDOQueryClient.sendPDQQueryRequestSOAP(xmlrequest); else xmlcontent = PDOQueryClient.sendPDQQueryRequestREST(xmlrequest); lastResponseMessage(xmlcontent); if (xmlcontent == null) return; else { log.debug("Query content response: " + xmlcontent); ndata.xmlContent(xmlcontent); } JAXBElement jaxbElement = jaxbUtil.unMashallFromString(ndata.xmlContent()); ResponseMessageType messageType = (ResponseMessageType) jaxbElement.getValue(); BodyType bt = messageType.getMessageBody(); MasterResponseType masterResponseType = (MasterResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), MasterResponseType.class); RequestXmlType requestXmlType = masterResponseType.getQueryMaster().get(0) .getRequestXml(); org.w3c.dom.Element element = (org.w3c.dom.Element) requestXmlType.getContent().get(0); if (element != null) log.debug("query definition not null"); else log.error("query definition is null"); String domString = edu.harvard.i2b2.common.util.xml.XMLUtil .convertDOMElementToString(element); log.debug("string output" + domString); JAXBContext jc1 = JAXBContext .newInstance(edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory.class); Unmarshaller unMarshaller = jc1.createUnmarshaller(); JAXBElement queryDefinitionJaxbElement = (JAXBElement) unMarshaller .unmarshal(new StringReader(domString)); QueryDefinitionType queryDefinitionType = (QueryDefinitionType) queryDefinitionJaxbElement .getValue(); int numOfPanels = queryDefinitionType.getPanel().size(); int conceptCount = 0; if (queryDefinitionType.getSubquery().size() == 0) // it's a normal query conceptCount = addQueryModel(queryDefinitionType, nodeXmls, conceptCount); // add concepts to nodeXmls, increment conceptCount else if (queryDefinitionType.getSubquery().size() > 0) // temporal queries have subqueries { conceptCount = addQueryModel(queryDefinitionType, nodeXmls, conceptCount); List<QueryDefinitionType> subqueries = queryDefinitionType.getSubquery(); for (QueryDefinitionType subQuery : subqueries) conceptCount = addQueryModel(subQuery, nodeXmls, conceptCount); // for each subquery, add concepts to nodeXmls, increment conceptCount } if (nodeXmls.size() == 0) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("No valid concept was found."); mBox.open(); event.detail = DND.DROP_NONE; return; } populateTable(nodeXmls); // get query instance String xmlRequest = ndata.writeContentQueryXML(); lastRequestMessage(xmlRequest); String xmlResponse = PDOQueryClient.sendPDQQueryRequestREST(xmlRequest); lastResponseMessage(xmlResponse); jaxbElement = jaxbUtil.unMashallFromString(xmlResponse); messageType = (ResponseMessageType) jaxbElement.getValue(); bt = messageType.getMessageBody(); InstanceResponseType instanceResponseType = (InstanceResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), InstanceResponseType.class); QueryInstanceData instanceData = null; XMLGregorianCalendar startDate = null; for (QueryInstanceType queryInstanceType : instanceResponseType.getQueryInstance()) { QueryInstanceData runData = new QueryInstanceData(); runData.visualAttribute("FA"); runData.tooltip("The results of the query run"); runData.id(new Integer(queryInstanceType.getQueryInstanceId()).toString()); XMLGregorianCalendar cldr = queryInstanceType.getStartDate(); runData.name("Results of " + "[" + cldr.getMonth() + "-" + cldr.getDay() + "-" + cldr.getYear() + " " + cldr.getHour() + ":" + cldr.getMinute() + ":" + cldr.getSecond() + "]"); if (instanceData == null) { startDate = cldr; instanceData = runData; } else { if (cldr.toGregorianCalendar().compareTo(startDate.toGregorianCalendar()) > 0) { startDate = cldr; instanceData = runData; } } } // get patient set if (instanceData == null) { event.detail = DND.DROP_NONE; return; } log.debug("Got query instance: " + instanceData.name()); xmlRequest = instanceData.writeContentQueryXML(); lastRequestMessage(xmlRequest); xmlResponse = PDOQueryClient.sendPDQQueryRequestREST(xmlRequest); lastResponseMessage(xmlResponse); jaxbElement = jaxbUtil.unMashallFromString(xmlResponse); messageType = (ResponseMessageType) jaxbElement.getValue(); bt = messageType.getMessageBody(); ResultResponseType resultResponseType = (ResultResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), ResultResponseType.class); for (QueryResultInstanceType queryResultInstanceType : resultResponseType .getQueryResultInstance()) { if (!(queryResultInstanceType.getQueryResultType().getName() .equalsIgnoreCase("PATIENTSET"))) { continue; } String status = queryResultInstanceType.getQueryStatusType().getName(); if (status.equalsIgnoreCase("FINISHED")) { String setId = new Integer(queryResultInstanceType.getResultInstanceId()) .toString(); String setSize = new Integer(queryResultInstanceType.getSetSize()).toString(); String description = queryResultInstanceType.getDescription(); if (description != null) { patientSetText.setText(description); } else { patientSetText.setText("Patient Set: " + setSize + " patients"); } patientRefId = new String(setId); patientMinNumText.setText("1"); leftArrowButton.setEnabled(false); int maxPatientNum = new Integer(patientMaxNumText.getText()).intValue(); patientSetSize = queryResultInstanceType.getSetSize(); if (patientSetSize > maxPatientNum) { rightArrowButton.setEnabled(true); patientMaxNumText.setText("10"); } else { rightArrowButton.setEnabled(false); if (patientSetSize > 0) { patientMaxNumText.setText(setSize); } } log.debug("Dropped set of: " + setSize + " patients"/* strs[0] */ + " with refId: " + setId/* * strs[ 1 ] */); } else { // message } } } catch (Exception e) { e.printStackTrace(); return; } } /* * else { List conceptChildren = tableXml.getChildren(); * parseDropConcepts(conceptChildren, event); * table.redraw(); } */ event.detail = DND.DROP_NONE; } catch (JDOMException e) { System.err.println(e.getMessage()); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } catch (Exception e) { System.err.println(e.getMessage()); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } } }); // create drag source DragSource source1 = new DragSource(groupNameText, DND.DROP_COPY); source1.setTransfer(types); source1.addDragListener(new DragSourceAdapter() { @Override public void dragSetData(DragSourceEvent event) { ConceptTableModel i2b2Model = (ConceptTableModel) table.getModel(); i2b2Model.fillDataFromTable(rowData); if (rowData.size() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("The set up table is empty."); mBox.open(); return; } StringWriter strWriter = new StringWriter(); DndType dndType = new DndType(); edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory pdoFactory = new edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory(); PanelType panelType = new PanelType(); panelType.setInvert(0); PanelType.TotalItemOccurrences totalOccurrences = new PanelType.TotalItemOccurrences(); totalOccurrences.setValue(1); panelType.setTotalItemOccurrences(totalOccurrences); panelType.setPanelNumber(0 + 1); // panelType.setName(panelData.getItems().get(0).name() + "_" // + generateMessageId().substring(0, 4)); panelType.setName("Panel-1"); // TO DO: get table rows and fill the panel object for (int i = 1; i < i2b2Model.getRowCount(); i++) { QueryModel node = (QueryModel) i2b2Model.getContentAt(7, i); ItemType itemType = new ItemType(); itemType.setItemKey(node.fullname()); itemType.setItemName(node.name()); itemType.setTooltip(node.tooltip()); itemType.setHlevel(Integer.parseInt(node.hlevel())); itemType.setClazz("ENC"); itemType.setItemIcon(node.visualAttribute().trim()); itemType.setItemColor(i2b2Model.getColorString((RGB) i2b2Model.getContentAt(5, i))); itemType.setItemRowNumber((String) i2b2Model.getContentAt(0, i)); itemType.setItemShape((String) i2b2Model.getContentAt(4, i)); itemType.getConstrainByValue().add(node.valueModel().writeValueConstraint()); itemType.getConstrainByDate().add(node.writeTimeConstrain()); panelType.getItem().add(itemType); } dndType.getAny().add(pdoFactory.createPanel(panelType)); edu.harvard.i2b2.crcxmljaxb.datavo.dnd.ObjectFactory dndFactory = new edu.harvard.i2b2.crcxmljaxb.datavo.dnd.ObjectFactory(); try { ExplorerJAXBUtil.getJAXBUtil().marshaller(dndFactory.createPluginDragDrop(dndType), strWriter); } catch (JAXBUtilException e) { e.printStackTrace(); } // put the data into the event event.data = strWriter.toString(); } }); DropTarget nameTarget = new DropTarget(groupNameText, DND.DROP_COPY); nameTarget.setTransfer(types); nameTarget.addDropListener(new DropTargetAdapter() { @Override public void dragLeave(DropTargetEvent event) { super.dragLeave(event); oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); } @SuppressWarnings("unchecked") public void drop(DropTargetEvent event) { if (event.data == null) { event.detail = DND.DROP_NONE; return; } ArrayList<QueryModel> nodeXmls = new ArrayList<QueryModel>(); try { SAXBuilder parser = new SAXBuilder(); String xmlContent = (String) event.data; java.io.StringReader xmlStringReader = new java.io.StringReader(xmlContent); org.jdom.Document panelDoc = parser.build(xmlStringReader); org.jdom.Element panelXml = panelDoc.getRootElement().getChild("panel", Namespace.getNamespace("http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/")); if (panelXml == null) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; return; } else { String domString = (new XMLOutputter()).outputString(panelXml); JAXBContext jc1 = JAXBContext .newInstance(edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory.class); Unmarshaller unMarshaller = jc1.createUnmarshaller(); JAXBElement panelJaxbElement = (JAXBElement) unMarshaller .unmarshal(new StringReader(domString)); PanelType panelType = (PanelType) panelJaxbElement.getValue(); String panelname = panelType.getName(); groupNameText.setText("Panel Name: " + panelname); queryNamemrnlistText.setText("Query Name: "); for (int j = 0; j < panelType.getItem().size(); j++) { ItemType itemType = panelType.getItem().get(j); QueryModel nodedata = new QueryModel(); nodedata.name(itemType.getItemName()); nodedata.visualAttribute("FA"); nodedata.tooltip(itemType.getTooltip()); nodedata.fullname(itemType.getItemKey()); nodedata.hlevel(new Integer(itemType.getHlevel()).toString()); // / need to handle query tool generated panels if (itemType.getItemShape() != null) { nodedata.tableRow().height = new String(itemType.getItemShape()); nodedata.tableRow().color = ((ConceptTableModel) table.getModel()) .getColor(itemType.getItemColor()); nodedata.tableRow().rowNumber = Integer.parseInt(itemType.getItemRowNumber()); } else { nodedata.tableRow().height = "Medium"; nodedata.tableRow().color = getRGBfromList(curRowNumber);//new RGB(0, 0, 128); nodedata.tableRow().rowNumber = j + 1; } nodedata.constrainByValue(itemType.getConstrainByValue()); if (itemType.getConstrainByValue().size() > 0) { nodedata.setValueConstrains(itemType.getConstrainByValue()); if (itemType.getConstrainByValue().size() > 0) { nodedata.setValueConstrains(itemType.getConstrainByValue()); if (nodedata.valueModel().hasEnumValue()) { if (nodedata.valueModel().useTextValue()) { ArrayList<String> results = new ArrayList<String>(); results.toArray(nodedata.valueModel().value().split(",")); nodedata.valueModel().selectedValues = results; } } } } // Handle Constrain By Dates for (int u = 0; u < itemType.getConstrainByDate().size(); u++) { nodedata.setTimeConstrain(itemType.getConstrainByDate().get(u).getDateFrom(), itemType.getConstrainByDate().get(u).getDateTo()); } String status = nodedata.setXmlContent(); if (status.equalsIgnoreCase("error")) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage( "Response delivered from the remote server could not be understood,\n" + "you may wish to retry your last action."); mBox.open(); event.detail = DND.DROP_NONE; return; } nodeXmls.add(nodedata); } // event.detail = DND.DROP_NONE; } populateTable(nodeXmls); } catch (JDOMException e) { System.err.println(e.getMessage()); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } catch (Exception e) { System.err.println(e.getMessage()); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } } public void dragEnter(DropTargetEvent event) { TextTransfer textTransfer = TextTransfer.getInstance(); if (textTransfer.isSupportedType(event.currentDataType)) { event.detail = DND.DROP_COPY; } oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } }); DropTarget target = new DropTarget(table, DND.DROP_COPY); target.setTransfer(types); target.addDropListener(new DropTargetAdapter() { @SuppressWarnings("unchecked") public void drop(DropTargetEvent event) { if (event.data == null) { event.detail = DND.DROP_NONE; return; } try { SAXBuilder parser = new SAXBuilder(); String xmlContent = (String) event.data; java.io.StringReader xmlStringReader = new java.io.StringReader(xmlContent); org.jdom.Document tableDoc = parser.build(xmlStringReader); org.jdom.Element tableXml = tableDoc.getRootElement().getChild("concepts", Namespace.getNamespace("http://www.i2b2.org/xsd/cell/ont/1.1/")); boolean isQuery = false; if (tableXml == null) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; return; } if (isQuery) { ArrayList<QueryModel> nodeXmls = new ArrayList<QueryModel>(); try { JAXBUtil jaxbUtil = ExplorerJAXBUtil.getJAXBUtil(); QueryMasterData ndata = new QueryMasterData(); ndata.name(tableXml.getChildText("name")); queryNamemrnlistText.setText(ndata.name()); ndata.xmlContent(null); ndata.id(tableXml.getChildTextTrim("query_master_id")); ndata.userId(tableXml.getChildTextTrim("user_id")); String xmlcontent = null; String xmlrequest = null; xmlrequest = ndata.writeDefinitionQueryXML(); lastRequestMessage(xmlrequest); if (System.getProperty("webServiceMethod").equals("SOAP")) { xmlcontent = PDOQueryClient.sendPDQQueryRequestSOAP(xmlrequest); } else { xmlcontent = PDOQueryClient.sendPDQQueryRequestREST(xmlrequest); } lastResponseMessage(xmlcontent); if (xmlcontent == null) { return; } else { log.debug("Query content response: " + xmlcontent); ndata.xmlContent(xmlcontent); } JAXBElement jaxbElement = jaxbUtil.unMashallFromString(ndata.xmlContent()); ResponseMessageType messageType = (ResponseMessageType) jaxbElement.getValue(); BodyType bt = messageType.getMessageBody(); MasterResponseType masterResponseType = (MasterResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), MasterResponseType.class); RequestXmlType requestXmlType = masterResponseType.getQueryMaster().get(0) .getRequestXml(); org.w3c.dom.Element element = (org.w3c.dom.Element) requestXmlType.getContent().get(0); if (element != null) { log.debug("query definition not null"); } else { log.error("query definition is null"); } String domString = edu.harvard.i2b2.common.util.xml.XMLUtil .convertDOMElementToString(element); log.debug("string output" + domString); JAXBContext jc1 = JAXBContext .newInstance(edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory.class); Unmarshaller unMarshaller = jc1.createUnmarshaller(); JAXBElement queryDefinitionJaxbElement = (JAXBElement) unMarshaller .unmarshal(new StringReader(domString)); QueryDefinitionType queryDefinitionType = (QueryDefinitionType) queryDefinitionJaxbElement .getValue(); int numOfPanels = queryDefinitionType.getPanel().size(); for (int i = 0; i < numOfPanels; i++) { PanelType panelType = queryDefinitionType.getPanel().get(i); for (int j = 0; j < panelType.getItem().size(); j++) { ItemType itemType = panelType.getItem().get(j); QueryModel nodedata = new QueryModel(); nodedata.name(itemType.getItemName()); nodedata.visualAttribute("FA"); nodedata.tooltip(itemType.getTooltip()); nodedata.fullname(itemType.getItemKey()); nodedata.hlevel(new Integer(itemType.getHlevel()).toString()); String status = nodedata.setXmlContent(); if (status.equalsIgnoreCase("error")) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage( "Response delivered from the remote server could not be understood,\n" + "you may wish to retry your last action."); mBox.open(); event.detail = DND.DROP_NONE; return; } nodeXmls.add(nodedata); } } populateTable(nodeXmls); // get query instance String xmlRequest = ndata.writeContentQueryXML(); lastRequestMessage(xmlRequest); // log.debug(xmlRequest); String xmlResponse = PDOQueryClient.sendPDQQueryRequestREST(xmlRequest); lastResponseMessage(xmlResponse); jaxbElement = jaxbUtil.unMashallFromString(xmlResponse); messageType = (ResponseMessageType) jaxbElement.getValue(); bt = messageType.getMessageBody(); InstanceResponseType instanceResponseType = (InstanceResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), InstanceResponseType.class); QueryInstanceData instanceData = null; XMLGregorianCalendar startDate = null; for (QueryInstanceType queryInstanceType : instanceResponseType.getQueryInstance()) { QueryInstanceData runData = new QueryInstanceData(); runData.visualAttribute("FA"); runData.tooltip("The results of the query run"); runData.id(new Integer(queryInstanceType.getQueryInstanceId()).toString()); XMLGregorianCalendar cldr = queryInstanceType.getStartDate(); runData.name("Results of " + "[" + cldr.getMonth() + "-" + cldr.getDay() + "-" + cldr.getYear() + " " + cldr.getHour() + ":" + cldr.getMinute() + ":" + cldr.getSecond() + "]"); if (instanceData == null) { startDate = cldr; instanceData = runData; } else { if (cldr.toGregorianCalendar().compareTo(startDate.toGregorianCalendar()) > 0) { startDate = cldr; instanceData = runData; } } } // get patient set if (instanceData == null) { event.detail = DND.DROP_NONE; return; } log.debug("Got query instance: " + instanceData.name()); xmlRequest = instanceData.writeContentQueryXML(); lastRequestMessage(xmlRequest); xmlResponse = PDOQueryClient.sendPDQQueryRequestREST(xmlRequest); lastResponseMessage(xmlResponse); jaxbElement = jaxbUtil.unMashallFromString(xmlResponse); messageType = (ResponseMessageType) jaxbElement.getValue(); bt = messageType.getMessageBody(); ResultResponseType resultResponseType = (ResultResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), ResultResponseType.class); for (QueryResultInstanceType queryResultInstanceType : resultResponseType .getQueryResultInstance()) { if (!(queryResultInstanceType.getQueryResultType().getName() .equalsIgnoreCase("PATIENTSET"))) { continue; } String status = queryResultInstanceType.getQueryStatusType().getName(); if (status.equalsIgnoreCase("FINISHED")) { // resultData.name("Patient Set - "+resultData // .patientCount()+" Patients"); // QueryResultData resultData = new // QueryResultData(); String setId = new Integer(queryResultInstanceType.getResultInstanceId()) .toString(); String setSize = new Integer(queryResultInstanceType.getSetSize()).toString(); patientSetText.setText("Patient Set: " + setSize + " patients");// strs[0]); patientRefId = new String(setId);// strs[1]); patientMinNumText.setText("1"); leftArrowButton.setEnabled(false); int maxPatientNum = new Integer(patientMaxNumText.getText()).intValue(); patientSetSize = queryResultInstanceType.getSetSize(); if (patientSetSize > maxPatientNum) { rightArrowButton.setEnabled(true); patientMaxNumText.setText("10"); } else { rightArrowButton.setEnabled(false); if (patientSetSize > 0) { patientMaxNumText.setText(setSize); } } log.debug("Dropped set of: " + setSize + " patients"/* strs[0] */ + " with refId: " + setId/* * strs[ 1 ] */); } else { // message } } } catch (Exception e) { e.printStackTrace(); return; } } else { List conceptChildren = tableXml.getChildren(); parseDropConcepts(conceptChildren, event); // System.setProperty("XMLfrommodel",(String) // event.data); table.redraw(); queryNamemrnlistText.setText("Query Name: "); groupNameText.setText("Panel Name: "); } event.detail = DND.DROP_NONE; } catch (JDOMException e) { System.err.println(e.getMessage()); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } catch (Exception e) { System.err.println(e.getMessage()); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } } public void dragEnter(DropTargetEvent event) { event.detail = DND.DROP_COPY; } }); DropTarget target1 = new DropTarget(patientSetText, DND.DROP_COPY); target1.setTransfer(types); target1.addDropListener(new DropTargetAdapter() { @SuppressWarnings("unchecked") public void drop(DropTargetEvent event) { if (event.data == null) { event.detail = DND.DROP_NONE; return; } String tmp = patientSetText.getText(); String dragStr = (String) event.data; String[] strs = dragStr.split(":"); if (strs[0].equalsIgnoreCase("logicquery")) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here. It accepts a patient set only."); mBox.open(); event.detail = DND.DROP_NONE; patientSetText.setText(tmp); return; } JAXBUtil jaxbUtil = ExplorerJAXBUtil.getJAXBUtil(); try { JAXBElement jaxbElement = jaxbUtil.unMashallFromString(dragStr); DndType dndType = (DndType) jaxbElement.getValue(); QueryResultInstanceType queryResultInstanceType = (QueryResultInstanceType) new JAXBUnWrapHelper() .getObjectByClass(dndType.getAny(), QueryResultInstanceType.class); if (queryResultInstanceType == null) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here. It accepts a patient set only."); mBox.open(); event.detail = DND.DROP_NONE; patientSetText.setText(tmp); return; } String resultTypeName = queryResultInstanceType.getQueryResultType().getName(); if (resultTypeName == null || !resultTypeName.equalsIgnoreCase("PATIENTSET")) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here. It accepts a patient set only."); mBox.open(); event.detail = DND.DROP_NONE; patientSetText.setText(tmp); return; } String setId = queryResultInstanceType.getResultInstanceId(); String setSize = new Integer(queryResultInstanceType.getSetSize()).toString(); patientSetText.setText(queryResultInstanceType.getDescription());// "Patient Set: " + setSize // + " patients");// strs[0]); patientRefId = new String(setId);// strs[1]); patientMinNumText.setText("1"); leftArrowButton.setEnabled(false); queryNamemrnlistText.setText("Query Name: "); // groupNameText.setText("Panel Name: "); int maxPatientNum = new Integer(patientMaxNumText.getText()).intValue(); patientSetSize = queryResultInstanceType.getSetSize(); if (patientSetSize > maxPatientNum) { rightArrowButton.setEnabled(true); patientMaxNumText.setText("10"); } else { rightArrowButton.setEnabled(false); // if(patientSetSize>0) { // patientMaxNumText.setText(setSize); // } } log.debug("Dropped set of: " + setSize + " patients"/* * strs[0 * ] */ + " with refId: " + setId/* strs[1] */); } catch (Exception e) { e.printStackTrace(); event.detail = DND.DROP_NONE; return; } } public void dragEnter(DropTargetEvent event) { event.detail = DND.DROP_COPY; } }); table.addCellResizeListener(new KTableCellResizeListener() { public void columnResized(int col, int newWidth) { log.debug("Column " + col + " resized to " + newWidth); } public void rowResized(int newHeight) { log.debug("Rows resized to " + newHeight); } }); table.addListener(SWT.Resize, new Listener() { public void handleEvent(Event event) { int tableWidth = table.getBounds().width; table.getModel().setColumnWidth(1, tableWidth - 505); } }); table.addMouseTrackListener(new MouseTrackListener() { public void mouseEnter(MouseEvent arg0) { } public void mouseExit(MouseEvent arg0) { } public void mouseHover(MouseEvent arg0) { MouseEvent evt = arg0; Rectangle rect = table.getCellRect(3, getRowNumber()); Rectangle rect1 = table.getCellRect(5, 1); // System.out.println("rect X and width: "+rect.x+","+rect.width) // ; // System.out.println("mouse X and Y: "+evt.x+","+evt.y); if (evt.y < rect.y && evt.x > rect1.x && evt.x < rect1.x + rect1.width) { table.setToolTipText("Double click the cell to change color."); } else { table.setToolTipText(""); } } }); // Item 2: a Color Palette TabItem item2 = new TabItem(tabFolder, SWT.NONE); item2.setText("Render a Timeline"); final Composite comp2 = new Composite(tabFolder, SWT.NONE); item2.setControl(comp2); GridLayout oGridLayout0 = new GridLayout(); oGridLayout0.marginWidth = 1; oGridLayout0.marginHeight = 5; comp2.setLayout(oGridLayout0); if (false) { Composite composite = new Composite(comp2, SWT.NO_BACKGROUND | SWT.EMBEDDED); /* * Set a Windows specific AWT property that prevents heavyweight * components from erasing their background. Note that this is a * global property and cannot be scoped. It might not be suitable * for your application. */ try { // System.setProperty("sun.awt.noerasebackground", "true"); } catch (NoSuchMethodError error) { } /* Create and setting up frame */ ////for mac fix //if ( System.getProperty("os.name").toLowerCase().startsWith("mac")) //SWT_AWT.embeddedFrameClass = "sun.lwawt.macosx.CViewEmbeddedFrame"; Frame frame = SWT_AWT.new_Frame(composite); Panel panel = new Panel(new BorderLayout()) { public void update(java.awt.Graphics g) { /* Do not erase the background */ paint(g); } }; frame.add(panel); JRootPane root = new JRootPane(); panel.add(root); java.awt.Container contentPane = root.getContentPane(); log.debug("got to here"); Record record1 = new Record(); // record1.start(); record1.init(); JScrollPane scrollPane = new JScrollPane(record1); contentPane.setLayout(new BorderLayout()); contentPane.add(scrollPane); } if (true) { Composite composite = new Composite(comp2, SWT.NO_BACKGROUND | SWT.EMBEDDED); GridData gridData3 = new GridData(); gridData3.horizontalIndent = 0; gridData3.verticalIndent = 0; gridData3.horizontalAlignment = GridData.FILL; gridData3.verticalAlignment = GridData.FILL; gridData3.grabExcessHorizontalSpace = true; gridData3.grabExcessVerticalSpace = true; composite.setLayoutData(gridData3); /* Create and setting up frame */ ////for mac fix //if ( System.getProperty("os.name").toLowerCase().startsWith("mac")) //SWT_AWT.embeddedFrameClass = "sun.lwawt.macosx.CViewEmbeddedFrame"; Frame frame = SWT_AWT.new_Frame(composite); Panel panel = new Panel(new BorderLayout());// { try { UIManager.setLookAndFeel(UIManager.getSystemLookAndFeelClassName()); } catch (Exception e) { log.debug("Error setting native LAF: " + e); } frame.add(panel); JRootPane root = new JRootPane(); panel.add(root); oAwtContainer = root.getContentPane(); log.debug("got to here"); } tabFolder.addSelectionListener(new SelectionListener() { public void widgetSelected(SelectionEvent e) { runMode = 0; ConceptTableModel i2b2Model = (ConceptTableModel) table.getModel(); i2b2Model.fillDataFromTable(rowData); if (rowData.size() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("The set up table is empty."); mBox.open(); return; } String patientSetStr = patientSetText.getText(); if (patientSetStr.equals("") && !isAll) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("Please set a patient set or choose all datamart option."); mBox.open(); return; } if (tabFolder.getSelectionIndex() == 1) { if (patientSetStr.equalsIgnoreCase("All")) { int minPatient = 0; try { String minText = patientMinNumText.getText(); minPatient = Integer.parseInt(minText); } catch (Exception e1) { minPatient = -1; } int maxPatient = 0; try { maxPatient = Integer.parseInt(patientMaxNumText.getText()); } catch (Exception e2) { maxPatient = -1; } PerformVisualizationQuery(oAwtContainer, "All", minPatient, maxPatient, bDisplayAllData); } else { int min = Integer.parseInt(patientMinNumText.getText()); int max = Integer.parseInt(patientMaxNumText.getText()); int start = new Integer(patientMinNumText.getText()).intValue(); int inc = new Integer(patientMaxNumText.getText()).intValue(); if (start + inc - 1 > patientSetSize) { rightArrowButton.setEnabled(false); } //patientMinNumText.setText("" + (start + inc)); leftArrowButton.setEnabled(true); PerformVisualizationQuery(oAwtContainer, patientRefId, min, max - 1, bDisplayAllData); } // getDisplay().syncExec(new Runnable() { // public void run() { // if(returnedNumber >= 0) { // //setDecreaseNumber(returnedNumber); // MessageBox mBox = new MessageBox(getShell(), // SWT.ICON_INFORMATION // | SWT.OK); // mBox.setText("Please Note ..."); // mBox.setMessage(/*"Can't return all the requested "+ // requestIndex+" patients, */"Only "+returnedNumber+" // patients returned"); // mBox.open(); // } // } // }); } else { patientMinNumText.setText("1"); java.awt.EventQueue.invokeLater(new Runnable() { public void run() { DestroyMiniVisualization(oAwtContainer); } }); } } public void widgetDefaultSelected(SelectionEvent e) { widgetSelected(e); } }); if (drawLeft) { horizontalForm.setWeights(new int[] { 30, 70 }); } return parent; }
From source file:edu.harvard.i2b2.adminTool.dataModel.PatientMappingFactory.java
@SuppressWarnings("unchecked") public String generateTimelineData(String result, ArrayList<TimelineRow> rows, boolean writeFile, boolean displayAll, boolean displayDemographics, final MainComposite explorer) { try {//from w ww . j a v a2 s .c om PDOResponseMessageModel pdoresponsefactory = new PDOResponseMessageModel(); StatusType statusType = pdoresponsefactory.getStatusFromResponseXML(result); if (!statusType.getType().equalsIgnoreCase("DONE")) { return "error"; } JAXBUtil jaxbUtil = PatientMappingJAXBUtil.getJAXBUtil(); JAXBElement jaxbElement = jaxbUtil.unMashallFromString(result); ResponseMessageType messageType = (ResponseMessageType) jaxbElement.getValue(); BodyType bodyType = messageType.getMessageBody(); PatientDataResponseType responseType = (PatientDataResponseType) new JAXBUnWrapHelper() .getObjectByClass(bodyType.getAny(), PatientDataResponseType.class); PageType pageType = responseType.getPage(); if (pageType != null) { final int returnLastIndex = pageType.getPagingByPatients().getPatientsReturned().getLastIndex() .intValue(); final int returnFirstIndex = pageType.getPagingByPatients().getPatientsReturned().getFirstIndex() .intValue(); final int requestLastIndex = pageType.getPagingByPatients().getPatientsRequested().getLastIndex() .intValue(); if (returnLastIndex < requestLastIndex) { // System.out.println("Can't return all the requested "+ // requestIndex+" patients, only "+returnIndex+" patients returned"); explorer.getDisplay().syncExec(new Runnable() { public void run() { // MessageBox mBox = new MessageBox(explorer // .getShell(), SWT.ICON_INFORMATION // | SWT.OK ); // mBox.setText("Please Note ..."); // mBox.setMessage("Only "+(returnLastIndex-returnFirstIndex+1)+" patients returned"); // mBox.open(); if (explorer.runMode() >= 0) { explorer.setIncrementNumber(returnLastIndex - returnFirstIndex + 1); } else if (explorer.runMode() == -1) { explorer.setDecreaseNumber(returnLastIndex - returnFirstIndex + 1); } } }); explorer.returnedNumber(returnLastIndex - returnFirstIndex + 1); } else { explorer.returnedNumber(-1); } } else { explorer.getDisplay().syncExec(new Runnable() { public void run() { // MessageBox mBox = new MessageBox(explorer // .getShell(), SWT.ICON_INFORMATION // | SWT.OK ); // mBox.setText("Please Note ..."); // mBox.setMessage("Only "+(returnLastIndex-returnFirstIndex+1)+" patients returned"); // mBox.open(); if (explorer.runMode() >= 0) { explorer.setIncrementNumber(-1); } else if (explorer.runMode() == -1) { explorer.setDecreaseNumber(-1); } } }); } StringBuilder resultFile = new StringBuilder(); resultFile.append(GetTimelineHeader()); PatientSet patientDimensionSet = pdoresponsefactory.getPatientSetFromResponseXML(result); if (patientDimensionSet != null) { log.debug("Total patient: " + patientDimensionSet.getPatient().size()); // for(int i=0; // i<patientDimensionSet.getPatientDimension().size();i++) { // PatientDimensionType patientType = // patientDimensionSet.getPatientDimension().get(i); // System.out.println("PatientNum: " + // patientType.getPatientNum()); // } } else { return "error"; } // / testing the visit set // PatientDataType.VisitDimensionSet visitSet = // pdoresponsefactory.getVisitSetFromResponseXML(result); // System.out.println("Total visits: "+visitSet.getVisitDimension(). // size()); List<ObservationSet> factSets = pdoresponsefactory.getFactSetsFromResponseXML(result); log.debug("\nGenerate lld:"); String curPNum = "-1"; for (int i = 0; i < patientDimensionSet.getPatient().size(); i++) { PatientType patientType = patientDimensionSet.getPatient().get(i); String pnum = patientType.getPatientId().getValue(); // Integer pnum = new Integer(snum); // log.debug("PatientNum: " + snum); //if(curPNum.equals("-1")) { curPNum = new String(pnum); //} if (displayDemographics) { resultFile.append(getTimelinePatientString(pnum.toString(), patientType)); } else { resultFile.append(getTimelinePatientString(pnum.toString())); } String path = null; TimelineRow currentRow = null; ObservationSet observationFactSet = null; for (int j = 0; j < rows.size(); j++) { TimelineRow row = rows.get(j); int total = 0; StringBuilder resultString = new StringBuilder(); XMLGregorianCalendar curStartDate = null; //int currentInstanceNum = 0; //String currentConcept = ""; ArrayList<ObservationType> facts = new ArrayList<ObservationType>(); ObservationType curFact = null; boolean recorded = false; String sStart_date = null; String sEnd_date = null; // loop thru all the pdo sets for this row here for (int s = 0; s < row.pdoItems.size(); s++) { PDOItem pset = row.pdoItems.get(s); observationFactSet = null; for (int m = 0; m < factSets.size(); m++) { ObservationSet tmpFactSet = factSets.get(m); if (tmpFactSet.getPanelName().equalsIgnoreCase(pset.panelName())) { observationFactSet = tmpFactSet; path = observationFactSet.getPanelName(); currentRow = row; break; } } if (observationFactSet == null) { continue; } for (int k = 0; k < observationFactSet.getObservation().size(); k++) { ObservationType obsFactType = observationFactSet.getObservation().get(k); //if(curFact == null) { //curFact = obsFactType; //} //facts.add(obsFactType); if (pnum.equals(obsFactType.getPatientId().getValue())) { /* * if ((curStartDate != null) && * (obsFactType.getStartDate().compare( * curStartDate) == DatatypeConstants.EQUAL)) { * continue; } */ if (curFact == null) { curFact = obsFactType; } if (curStartDate == null) { curStartDate = obsFactType.getStartDate(); } sStart_date = obsFactType.getStartDate().getMonth() + "-" + obsFactType.getStartDate().getDay() + "-" + obsFactType.getStartDate().getYear() + " 12:00"; if (obsFactType.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = obsFactType.getEndDate().getMonth() + "-" + obsFactType.getEndDate().getDay() + "-" + obsFactType.getEndDate().getYear() + " 12:00"; } double nval = -1; if (obsFactType.getNvalNum().getValue() != null) { nval = obsFactType.getNvalNum().getValue().doubleValue(); } PDOValueModel valdp = null; if (false) {//pset.hasValueDisplayProperty) { for (int n = 0; n < pset.valDisplayProperties.size(); n++) { PDOValueModel tmpvaldp = pset.valDisplayProperties.get(n); // if (tmpvaldp.inRange(nval)) { valdp = tmpvaldp; // break; // } } String sValue = getSValue(obsFactType.getConceptCd().getName(), obsFactType, true); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, "slateblue", valdp.height, sValue)); } else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, valdp.color, valdp.height, sValue)); } } else { ////////////////////// String sValue = ""; if (sameInstance(curFact, obsFactType)) { //if(recorded) { facts.add(obsFactType); //recorded = false; continue; //} /*sValue = getSValueSame(obsFactType.getConceptCd().getName(), obsFactType, false); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString .append(getTimelineDateStringHeightSame( sStart_date, sEnd_date, "slateblue", pset.height, sValue)); } else { resultString .append(getTimelineDateStringHeightSame( sStart_date, sEnd_date, pset.color, pset.height, sValue)); }*/ } //else { sValue = getSValue(curFact.getConceptCd().getName(), facts, false); //} sStart_date = curFact.getStartDate().getMonth() + "-" + curFact.getStartDate().getDay() + "-" + curFact.getStartDate().getYear() + " 12:00"; if (curFact.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = curFact.getEndDate().getMonth() + "-" + curFact.getEndDate().getDay() + "-" + curFact.getEndDate().getYear() + " 12:00"; } //if ((curStartDate != null) // && (obsFactType.getStartDate() // .compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} } total++; recorded = false; facts.clear(); facts.add(obsFactType); curStartDate = obsFactType.getStartDate(); curFact = obsFactType; } else { if (recorded || facts.size() == 0) { curPNum = new String(pnum); continue; } sStart_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //if (obsFactType.getEndDate() == null) { //sEnd_date = sStart_date; //} else { sEnd_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //} //curFact = null; String sValue = getSValue(curFact.getConceptCd().getName(), facts, false); //if ((curStartDate != null) //&& (obsFactType.getStartDate() //.compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} total++; recorded = true; facts.clear(); curStartDate = null;//obsFactType.getStartDate(); curFact = null;//obsFactType; curPNum = new String(pnum); } } } if (total > 0) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, total)); // log.debug(resultString.toString()); resultFile.append(resultString); total = 0; ////rdtr } else { // display all if (displayAll) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, 1)); // log.debug(getTimelineEmptyDateString()); resultFile.append(getTimelineEmptyDateString()); } } if (recorded || facts.size() == 0) { curPNum = new String(pnum); continue; } sStart_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //if (obsFactType.getEndDate() == null) { //sEnd_date = sStart_date; //} else { sEnd_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //} //curFact = null; String sValue = getSValue(curFact.getConceptCd().getName(), facts, false); resultString .append(getTimelineDateStringHeight(sStart_date, sEnd_date, "navyblue", "p10", sValue)); total++; recorded = true; facts.clear(); //curStartDate = obsFactType.getStartDate(); //curFact = obsFactType; curPNum = new String(pnum); if (total > 0) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, total)); // log.debug(resultString.toString()); resultFile.append(resultString); } } } resultFile.append(GetTimelineFooter()); if (writeFile) { String i2b2File = System.getProperty("user.dir") + "/temp/" + "i2b2xml.lld"; File oDelete = new File(i2b2File); if (oDelete != null) oDelete.delete(); RandomAccessFile f = new RandomAccessFile(i2b2File, "rw"); append(f, resultFile.toString()); f.close(); } // log.debug("\nThe lld file: \n"+resultFile.toString()); return resultFile.toString(); } catch (org.apache.axis2.AxisFault e) { e.printStackTrace(); log.error(e.getMessage()); return null; } catch (Exception e) { log.error(e.getMessage()); e.printStackTrace(); return "error"; } }
From source file:edu.harvard.i2b2.explorer.dataModel.TimelineFactory.java
@SuppressWarnings("unchecked") public String generateTimelineData(String result, ArrayList<TimelineRow> rows, boolean writeFile, boolean displayAll, boolean displayDemographics, final MainComposite explorer) { try {/*from w w w .j a va 2 s . c o m*/ PDOResponseMessageModel pdoresponsefactory = new PDOResponseMessageModel(); StatusType statusType = pdoresponsefactory.getStatusFromResponseXML(result); if (!statusType.getType().equalsIgnoreCase("DONE")) { return "error"; } JAXBUtil jaxbUtil = ExplorerJAXBUtil.getJAXBUtil(); JAXBElement jaxbElement = jaxbUtil.unMashallFromString(result); ResponseMessageType messageType = (ResponseMessageType) jaxbElement.getValue(); BodyType bodyType = messageType.getMessageBody(); PatientDataResponseType responseType = (PatientDataResponseType) new JAXBUnWrapHelper() .getObjectByClass(bodyType.getAny(), PatientDataResponseType.class); PageType pageType = responseType.getPage(); if (pageType != null) { final int returnLastIndex = pageType.getPagingByPatients().getPatientsReturned().getLastIndex() .intValue(); final int returnFirstIndex = pageType.getPagingByPatients().getPatientsReturned().getFirstIndex() .intValue(); final int requestLastIndex = pageType.getPagingByPatients().getPatientsRequested().getLastIndex() .intValue(); if (returnLastIndex < requestLastIndex) { // System.out.println("Can't return all the requested "+ // requestIndex+" patients, only "+returnIndex+" patients returned"); explorer.getDisplay().syncExec(new Runnable() { public void run() { // MessageBox mBox = new MessageBox(explorer // .getShell(), SWT.ICON_INFORMATION // | SWT.OK ); // mBox.setText("Please Note ..."); // mBox.setMessage("Only "+(returnLastIndex-returnFirstIndex+1)+" patients returned"); // mBox.open(); if (explorer.runMode() >= 0) { explorer.setIncrementNumber(returnLastIndex - returnFirstIndex + 1); } else if (explorer.runMode() == -1) { explorer.setDecreaseNumber(returnLastIndex - returnFirstIndex + 1); } } }); explorer.returnedNumber(returnLastIndex - returnFirstIndex + 1); } else { explorer.returnedNumber(-1); } } else { explorer.getDisplay().syncExec(new Runnable() { public void run() { // MessageBox mBox = new MessageBox(explorer // .getShell(), SWT.ICON_INFORMATION // | SWT.OK ); // mBox.setText("Please Note ..."); // mBox.setMessage("Only "+(returnLastIndex-returnFirstIndex+1)+" patients returned"); // mBox.open(); if (explorer.runMode() >= 0) { explorer.setIncrementNumber(-1); } else if (explorer.runMode() == -1) { explorer.setDecreaseNumber(-1); } } }); } StringBuilder resultFile = new StringBuilder(); resultFile.append(GetTimelineHeader()); PatientSet patientDimensionSet = pdoresponsefactory.getPatientSetFromResponseXML(result); if (patientDimensionSet != null) { log.debug("Total patient: " + patientDimensionSet.getPatient().size()); // for(int i=0; // i<patientDimensionSet.getPatientDimension().size();i++) { // PatientDimensionType patientType = // patientDimensionSet.getPatientDimension().get(i); // System.out.println("PatientNum: " + // patientType.getPatientNum()); // } } else { return "error"; } // / testing the visit set // PatientDataType.VisitDimensionSet visitSet = // pdoresponsefactory.getVisitSetFromResponseXML(result); // System.out.println("Total visits: "+visitSet.getVisitDimension(). // size()); List<ObservationSet> factSets = pdoresponsefactory.getFactSetsFromResponseXML(result); log.debug("\nGenerate lld:"); String curPNum = "-1"; for (int i = 0; i < patientDimensionSet.getPatient().size(); i++) { PatientType patientType = patientDimensionSet.getPatient().get(i); String pnum = patientType.getPatientId().getValue(); // Integer pnum = new Integer(snum); // log.debug("PatientNum: " + snum); //if(curPNum.equals("-1")) { curPNum = new String(pnum); //} if (displayDemographics) { resultFile.append(getTimelinePatientString(pnum.toString(), patientType)); } else { resultFile.append(getTimelinePatientString(pnum.toString())); } String path = null; TimelineRow currentRow = null; ObservationSet observationFactSet = null; for (int j = 0; j < rows.size(); j++) { TimelineRow row = rows.get(j); int total = 0; StringBuilder resultString = new StringBuilder(); XMLGregorianCalendar curStartDate = null; //int currentInstanceNum = 0; //String currentConcept = ""; ArrayList<ObservationType> facts = new ArrayList<ObservationType>(); ObservationType curFact = null; boolean recorded = false; String sStart_date = null; String sEnd_date = null; // loop thru all the pdo sets for this row here for (int s = 0; s < row.pdoItems.size(); s++) { PDOItem pset = row.pdoItems.get(s); observationFactSet = null; for (int m = 0; m < factSets.size(); m++) { ObservationSet tmpFactSet = factSets.get(m); if (tmpFactSet.getPanelName().equalsIgnoreCase(pset.panelName())) { observationFactSet = tmpFactSet; path = observationFactSet.getPanelName(); currentRow = row; break; } } if (observationFactSet == null) { continue; } for (int k = 0; k < observationFactSet.getObservation().size(); k++) { ObservationType obsFactType = observationFactSet.getObservation().get(k); //if(curFact == null) { //curFact = obsFactType; //} //facts.add(obsFactType); if (pnum.equals(obsFactType.getPatientId().getValue())) { /* * if ((curStartDate != null) && * (obsFactType.getStartDate().compare( * curStartDate) == DatatypeConstants.EQUAL)) { * continue; } */ if (curFact == null) { curFact = obsFactType; } if (curStartDate == null) { curStartDate = obsFactType.getStartDate(); } sStart_date = obsFactType.getStartDate().getMonth() + "-" + obsFactType.getStartDate().getDay() + "-" + obsFactType.getStartDate().getYear(); if (obsFactType.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = obsFactType.getEndDate().getMonth() + "-" + obsFactType.getEndDate().getDay() + "-" + obsFactType.getEndDate().getYear(); } double nval = -1; if (obsFactType.getNvalNum().getValue() != null) { nval = obsFactType.getNvalNum().getValue().doubleValue(); } PDOValueModel valdp = null; boolean same = sameInstance(curFact, obsFactType); if (false) {//pset.hasValueDisplayProperty) { for (int n = 0; n < pset.valDisplayProperties.size(); n++) { PDOValueModel tmpvaldp = pset.valDisplayProperties.get(n); // if (tmpvaldp.inRange(nval)) { valdp = tmpvaldp; // break; // } } String sValue = getSValue(obsFactType.getConceptCd().getName(), obsFactType, true); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, "slateblue", valdp.height, sValue)); } else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, valdp.color, valdp.height, sValue)); } } else { ////////////////////// String sValue = ""; if (same && k != observationFactSet.getObservation().size() - 1) { //if(recorded) { facts.add(obsFactType); //recorded = false; continue; //} /*sValue = getSValueSame(obsFactType.getConceptCd().getName(), obsFactType, false); if ((curStartDate != null) && (obsFactType.getStartDate() .compare(curStartDate) == DatatypeConstants.EQUAL)) { resultString .append(getTimelineDateStringHeightSame( sStart_date, sEnd_date, "slateblue", pset.height, sValue)); } else { resultString .append(getTimelineDateStringHeightSame( sStart_date, sEnd_date, pset.color, pset.height, sValue)); }*/ } //else { if (facts.size() == 0) { facts.add(obsFactType); } sValue = getSValue(curFact.getConceptCd().getName(), facts, false); //} sStart_date = curFact.getStartDate().getMonth() + "-" + curFact.getStartDate().getDay() + "-" + curFact.getStartDate().getYear(); if (curFact.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = curFact.getEndDate().getMonth() + "-" + curFact.getEndDate().getDay() + "-" + curFact.getEndDate().getYear(); } //if ((curStartDate != null) // && (obsFactType.getStartDate() // .compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} } total++; recorded = false; facts.clear(); facts.add(obsFactType); curStartDate = obsFactType.getStartDate(); curFact = obsFactType; ///// if (!same && k == observationFactSet.getObservation().size() - 1) { String sValue = ""; sValue = getSValue(obsFactType.getConceptCd().getName(), facts, false); //} sStart_date = obsFactType.getStartDate().getMonth() + "-" + obsFactType.getStartDate().getDay() + "-" + obsFactType.getStartDate().getYear(); if (obsFactType.getEndDate() == null) { sEnd_date = sStart_date; } else { sEnd_date = obsFactType.getEndDate().getMonth() + "-" + obsFactType.getEndDate().getDay() + "-" + obsFactType.getEndDate().getYear(); } //if ((curStartDate != null) // && (obsFactType.getStartDate() // .compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} total++; } //// } else { if (recorded || facts.size() == 0) { curPNum = new String(pnum); continue; } sStart_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear(); //if (obsFactType.getEndDate() == null) { //sEnd_date = sStart_date; //} else { sEnd_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear() + " 12:00"; //} //curFact = null; String sValue = getSValue(curFact.getConceptCd().getName(), facts, false); //if ((curStartDate != null) //&& (obsFactType.getStartDate() //.compare(curStartDate) == DatatypeConstants.EQUAL)) { //resultString //.append(getTimelineDateStringHeight( //sStart_date, sEnd_date, //"slateblue", //pset.height, sValue)); //} else { resultString.append(getTimelineDateStringHeight(sStart_date, sEnd_date, pset.color, pset.height, sValue)); //} total++; recorded = true; facts.clear(); curStartDate = null;//obsFactType.getStartDate(); curFact = null;//obsFactType; curPNum = new String(pnum); } } } if (total > 0) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, total)); // log.debug(resultString.toString()); resultFile.append(resultString); total = 0; recorded = true; } else { // display all if (displayAll) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, 1)); // log.debug(getTimelineEmptyDateString()); resultFile.append(getTimelineEmptyDateString()); } } if (recorded || facts.size() == 0) { curPNum = new String(pnum); continue; } sStart_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear(); //if (obsFactType.getEndDate() == null) { //sEnd_date = sStart_date; //} else { sEnd_date = curStartDate.getMonth() + "-" + curStartDate.getDay() + "-" + curStartDate.getYear(); //} //curFact = null; String sValue = getSValue(curFact.getConceptCd().getName(), facts, false); resultString .append(getTimelineDateStringHeight(sStart_date, sEnd_date, "navyblue", "p10", sValue)); total++; recorded = true; facts.clear(); //curStartDate = obsFactType.getStartDate(); //curFact = obsFactType; curPNum = new String(pnum); if (total > 0) { // log.debug("-- "+path+" has "+total+" events"); resultFile.append(getTimelineConceptString(row.displayName, total)); // log.debug(resultString.toString()); resultFile.append(resultString); } } } resultFile.append(GetTimelineFooter()); if (writeFile) { String i2b2File = System.getProperty("user.dir") + "/temp/" + "i2b2xml.lld"; File oDelete = new File(i2b2File); if (oDelete != null) oDelete.delete(); RandomAccessFile f = new RandomAccessFile(i2b2File, "rw"); append(f, resultFile.toString()); f.close(); } // log.debug("\nThe lld file: \n"+resultFile.toString()); return resultFile.toString(); } catch (org.apache.axis2.AxisFault e) { e.printStackTrace(); log.error(e.getMessage()); return null; } catch (Exception e) { log.error(e.getMessage()); e.printStackTrace(); return "error"; } }
From source file:org.eclipse.smila.ontology.records.SesameRecordReader.java
/** * get only the date (year, month, day) part of the calendar literal, don't calculate with timezones. * /*from w ww .ja va 2s . c o m*/ * @param ontoCal * a ontology calendar literal value. * @return a Calendar with only the date part. */ private Calendar getDateOnly(final XMLGregorianCalendar ontoCal) { final Calendar cal = Calendar.getInstance(); cal.setTimeInMillis(0); if (ontoCal.getYear() != DatatypeConstants.FIELD_UNDEFINED) { cal.set(Calendar.YEAR, ontoCal.getYear()); } if (ontoCal.getMonth() != DatatypeConstants.FIELD_UNDEFINED) { cal.set(Calendar.MONTH, ontoCal.getMonth() - 1); } if (ontoCal.getDay() != DatatypeConstants.FIELD_UNDEFINED) { cal.set(Calendar.DAY_OF_MONTH, ontoCal.getDay()); } return cal; }
From source file:org.orcid.frontend.web.forms.CurrentWork.java
private void setDate() { String dateString = crossRefContext.getDate(); XMLGregorianCalendar cal = DateUtils.convertToXMLGregorianCalendar(dateString); if (cal != null) { int calYear = cal.getYear(); if (calYear != DatatypeConstants.FIELD_UNDEFINED) { year = String.valueOf(calYear); }/* w w w . j a va 2s . c o m*/ int calMonth = cal.getMonth(); if (calMonth != DatatypeConstants.FIELD_UNDEFINED) { month = String.valueOf(calMonth); } int calDay = cal.getDay(); if (calDay != DatatypeConstants.FIELD_UNDEFINED) { day = String.valueOf(calDay); } } }
From source file:org.orcid.frontend.web.forms.Publication.java
public OrcidWork getOrcidWork() { initCrossRefContext();/*from w w w .j a v a2 s . c o m*/ OrcidWork orcidWork = new OrcidWork(); if (StringUtils.isNotBlank(doi)) { WorkExternalIdentifier doiExtId = new WorkExternalIdentifier(); doiExtId.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI); doiExtId.setWorkExternalIdentifierId(new WorkExternalIdentifierId(doi)); WorkExternalIdentifiers workExtIds = new WorkExternalIdentifiers(); orcidWork.setWorkExternalIdentifiers(workExtIds); workExtIds.getWorkExternalIdentifier().add(doiExtId); } if (StringUtils.isNotBlank(title)) { WorkTitle workTitle = new WorkTitle(); orcidWork.setWorkTitle(workTitle); workTitle.setTitle(new Title(title)); } // Will throw an IllegalArgumentException if not valid CitationType cType = CitationType.fromValue(citationType); Citation citation = new Citation(fullCitation, cType); orcidWork.setWorkCitation(citation); String publicationDateString = crossRefContext.getDate(); if (StringUtils.isNotBlank(publicationDateString)) { XMLGregorianCalendar publicationDateGregCal = DateUtils .convertToXMLGregorianCalendar(publicationDateString); if (publicationDateGregCal != null) { Year publicationyear = new Year(publicationDateGregCal.getYear()); Month publicationMonth = publicationDateGregCal.getMonth() == DatatypeConstants.FIELD_UNDEFINED ? null : new Month(publicationDateGregCal.getMonth()); Day publicationDay = publicationDateGregCal.getDay() == DatatypeConstants.FIELD_UNDEFINED ? null : new Day(publicationDateGregCal.getDay()); orcidWork .setPublicationDate(new PublicationDate(publicationyear, publicationMonth, publicationDay)); } } String author = crossRefContext.getAuthor(); if (StringUtils.isNotBlank(author)) { WorkContributors workContributors = new WorkContributors(); orcidWork.setWorkContributors(workContributors); Contributor contributor = new Contributor(); workContributors.getContributor().add(contributor); contributor.setCreditName(new CreditName(author)); ContributorAttributes contributorAttributes = new ContributorAttributes(); contributor.setContributorAttributes(contributorAttributes); contributorAttributes.setContributorRole(ContributorRole.AUTHOR); contributorAttributes.setContributorSequence(SequenceType.FIRST); } return orcidWork; }
From source file:org.oscarehr.hospitalReportManager.HRMReport.java
public List<Integer> getDateOfBirth() { List<Integer> dateOfBirthList = new ArrayList<Integer>(); XMLGregorianCalendar fullDate = dateFP(demographics.getDateOfBirth()); dateOfBirthList.add(fullDate.getYear()); dateOfBirthList.add(fullDate.getMonth()); dateOfBirthList.add(fullDate.getDay()); return dateOfBirthList; }
From source file:org.oscarehr.integration.mchcv.OnlineHCValidator.java
@Override public HCValidationResult validate(String healthCardNumber, String versionCode) { Requests requests = new Requests(); HcvRequest request = new HcvRequest(); request.setHealthNumber(healthCardNumber); request.setVersionCode(versionCode); requests.getHcvRequest().add(request); HcvResults results = null;// w w w .ja v a 2s. c om try { results = validation.validate(requests, "en"); } catch (Faultexception ex) { throw new RuntimeException(ex.getMessage()); } List persons = results.getResults(); Person person = (Person) persons.get(0); HCValidationResult result = new HCValidationResult(); result.setResponseCode(person.getResponseCode()); result.setResponseDescription(person.getResponseDescription()); result.setResponseAction(person.getResponseAction()); result.setFirstName(person.getFirstName()); result.setLastName(person.getLastName()); result.setGender(person.getGender()); String birthDate = null; XMLGregorianCalendar xmlBirthDate = person.getDateOfBirth(); if (xmlBirthDate != null) { birthDate = makeDate(xmlBirthDate.getYear(), xmlBirthDate.getMonth(), xmlBirthDate.getDay()); } result.setBirthDate(birthDate); String expiryDate = null; XMLGregorianCalendar xmlExpiryDate = person.getExpiryDate(); if (xmlExpiryDate != null) { expiryDate = makeDate(xmlExpiryDate.getYear(), xmlExpiryDate.getMonth(), xmlExpiryDate.getDay()); } result.setExpiryDate(expiryDate); return result; }
From source file:org.ow2.aspirerfid.demos.warehouse.management.beg.CaptureReport.java
private void handleReports(ECReports reports) throws IOException, JAXBException { log.debug("**********************Handling incomming reports****************************"); // get the current time and set the eventTime XMLGregorianCalendar now = null; try {/*from w w w. j ava 2s. c o m*/ DatatypeFactory dataFactory = DatatypeFactory.newInstance(); now = dataFactory.newXMLGregorianCalendar(new GregorianCalendar()); log.debug("Event Time:" + now.getHour() + ":" + now.getMinute() + ":" + ":" + now.getSecond() + "\n"); } catch (DatatypeConfigurationException e) { e.printStackTrace(); } List<ECReport> theReports = reports.getReports().getReport(); // collect all the tags List<EPC> epcs = new LinkedList<EPC>(); if (theReports != null) { for (ECReport report : theReports) { // log.debug("Report Count: "+report.getGroup().size()); log.debug("***************Report Name:" + report.getReportName() + "**************"); if (report.getGroup() != null) { for (ECReportGroup group : report.getGroup()) { if (WarehouseManagement.getEntryDateTextField().equals("")) { WarehouseManagement.setEntryDateTextField( now.getDay() + "/" + now.getMonth() + "/" + now.getYear()); } if (WarehouseManagement.getEntryHourTextField().equals("")) { WarehouseManagement.setEntryHourTextField( now.getHour() + ":" + now.getMinute() + ":" + now.getSecond()); } WarehouseManagement.setZoneIDTextField(zoneID); WarehouseManagement.setWarehouseIDTextField(warehouseID); log.debug("Group Count: " + group.getGroupCount().getCount()); log.debug("Group Name: " + group.getGroupName()); if (group.getGroupList() != null) { deliveredItem = null; // warehousemen if (group.getGroupName().equals(warehousemenGroupName)) { for (ECReportGroupListMember member : group.getGroupList().getMember()) { if (member.getEpc() != null) { WarehouseManagement .setUserIDTextField(member.getTag().getValue().split(":")[4]); } } } // Invoice if (group.getGroupName().equals(invoiceGroupName)) { for (ECReportGroupListMember member : group.getGroupList().getMember()) { if (member.getEpc() != null) { WarehouseManagement .setInvoiceIDTextField(member.getTag().getValue().split(":")[4]); WarehouseManagement.setOfferingDateTextField("22/05/08"); WarehouseManagement.setOfferingHourTextField("10:53:22"); } } } // // Small Packets // if (group.getGroupName().equals("urn:epc:pat:gid-96:145.56.*")) { // for (ECReportGroupListMember member : group.getGroupList().getMember()) { // if (member.getEpc() != null) { // // WarehouseManagement.setInvoiceIDTextField(member.getTag().getValue().split(":")[4]); // } // } // } // // Medium Packets // if (group.getGroupName().equals("urn:epc:pat:gid-96:145.87.*")) { // for (ECReportGroupListMember member : group.getGroupList().getMember()) { // if (member.getEpc() != null) { // // WarehouseManagement.setInvoiceIDTextField(member.getTag().getValue().split(":")[4]); // } // } // } for (int i = 0; i < nOFmerchandise; i++) { if (group.getGroupName().equals(packetsGroupName[i])) { BigInteger quantity = new BigInteger(packetsQuantity[i]); BigInteger expectedQuantity = new BigInteger(packetsExpectedQuantity[i]); BigInteger quantityDelivered = new BigInteger( (group.getGroupCount().getCount()) + ""); BigInteger quantityRemain = quantity.add(quantityDelivered.negate()); for (ECReportGroupListMember member : group.getGroupList().getMember()) { if (member.getEpc() != null) { deliveredItem = new DeliveredItem(); deliveredItem.setCompany(packetsCompany[i]); deliveredItem.setDeliveryDate( now.getDay() + "/" + now.getMonth() + "/" + now.getYear()); deliveredItem.setDescription(packetsDescription[i]); deliveredItem.setExpectedQuantity(expectedQuantity); deliveredItem.setMeasurementID(packetsMeasurementID[i]); deliveredItem.setQuantity(quantity); deliveredItem.setQuantityDelivered(quantityDelivered); deliveredItem.setQuantityRemain(quantityRemain); deliveredItem.setItemCode(member.getTag().getValue().split(":")[4]); WarehouseManagement.updateDeliveryTableModel(deliveredItem); deliveredItem = null; } } } } // Print All for (ECReportGroupListMember member : group.getGroupList().getMember()) { if (member.getEpc() != null) { log.debug("***Recieved Group Values***"); log.debug("RawDecimal Value: " + member.getRawDecimal().getValue()); { if (!(member.getEpc() == null)) epcs.add(member.getEpc()); log.debug("Epc Value: " + member.getEpc().getValue()); if ((member.getEpc() == null)) log.debug("Epc Value: null"); } log.debug("RawHex Value: " + member.getRawHex().getValue()); log.debug("Tag Value: " + member.getTag().getValue()); // log.debug("Group // Value:"+member.getExtension().getFieldList().toString()); } } } } } } } if (epcs.size() == 0) { log.debug("no epc received - generating no event"); return; } }
From source file:oscar.oscarLab.ca.all.parsers.HRMXMLHandler.java
private String getFormattedDate(XMLGregorianCalendar date, boolean omitTime) { if (date == null) { return ""; }/*from w w w .ja v a2s . c o m*/ return date.getYear() + "-" + date.getMonth() + "-" + date.getDay() + (!omitTime ? date.getHour() + ":" + date.getMinute() : ""); }