Example usage for javax.xml.bind JAXBElement JAXBElement

List of usage examples for javax.xml.bind JAXBElement JAXBElement

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Introduction

In this page you can find the example usage for javax.xml.bind JAXBElement JAXBElement.

Prototype

public JAXBElement(QName name, Class<T> declaredType, T value)

Source Link

Document

Construct an xml element instance.

Usage

From source file:org.jboss.jopr.tool.jbas5.PluginDescriptorGenerator.java

private static JAXBElement<? extends ConfigurationProperty> getJAXBElement(ConfigurationProperty configProp) {
    JAXBElement<? extends ConfigurationProperty> propElement;
    QName qname;//from   ww w  .j av a 2s. c  o  m
    if (configProp instanceof SimpleProperty)
        qname = SIMPLE_PROPERTY_QNAME;
    else if (configProp instanceof ListProperty)
        qname = LIST_PROPERTY_QNAME;
    else if (configProp instanceof MapProperty)
        qname = MAP_PROPERTY_QNAME;
    else
        throw new IllegalStateException();
    propElement = new JAXBElement(qname, configProp.getClass(), configProp);
    return propElement;
}

From source file:org.jembi.rhea.transformers.XDSRepositoryProvideAndRegisterDocument.java

protected ProvideAndRegisterDocumentSetRequestType buildRegisterRequest(String oru_r01_request,
        EncounterInfo enc, XDSAffinityDomain domain) {
    ProvideAndRegisterDocumentSetRequestType xdsRequest = new ProvideAndRegisterDocumentSetRequestType();
    SubmitObjectsRequest submissionRequest = new SubmitObjectsRequest();
    RegistryObjectListType registryObjects = new RegistryObjectListType();
    submissionRequest.setRegistryObjectList(registryObjects);
    xdsRequest.setSubmitObjectsRequest(submissionRequest);
    Date now = new Date();

    // For each document
    ExtrinsicObjectType document = XDSUtil.createExtrinsicObject("text/xml", "Physical",
            XdsGuidType.XDSDocumentEntry);

    // To add slots
    document.getSlot().add(XDSUtil.createSlot("creationTime", formatter_yyyyMMdd.format(now)));
    document.getSlot().add(XDSUtil.createSlot("languageCode", "en-us"));
    document.getSlot().add(XDSUtil.createSlot("serviceStartTime", enc.getEncounterDateTime()));
    document.getSlot().add(XDSUtil.createSlot("serviceStopTime", enc.getEncounterDateTime()));
    document.getSlot().add(XDSUtil.createSlot("sourcePatientId", enc.getPID()));
    document.getSlot()//  w w w.  ja  v  a2s.c  o m
            .add(XDSUtil.createSlot("sourcePatientInfo", "PID-3|" + enc.getPID(), "PID-5|" + enc.getName()));
    //if (domain.getRepositoryUniqueId()!=null)
    //   document.getSlot().add(XDSUtil.createSlot("repositoryUniqueId", domain.getRepositoryUniqueId()));
    //if (domain.getHomeCommunityId()!=null)
    //   document.getSlot().add(XDSUtil.createSlot("homeCommunityId", domain.getHomeCommunityId()));

    // To add classifications
    SlotType1[] authorSlots = new SlotType1[] { XDSUtil.createSlot("authorPerson", enc.getAttendingDoctor()),
            XDSUtil.createSlot("authorInstitution", enc.getLocation()), };
    document.getClassification().add(
            XDSUtil.createClassification(document, XdsGuidType.XDSDocumentEntry_Author, "", null, authorSlots));

    SlotType1[] classCodeSlots = new SlotType1[] {
            XDSUtil.createSlot("codingScheme", domain.getClassCode().getCodingScheme()) };
    document.getClassification()
            .add(XDSUtil.createClassification(document, XdsGuidType.XDSDocumentEntry_ClassCode,
                    domain.getClassCode().getCode(), domain.getClassCode().getDisplay(), classCodeSlots));

    SlotType1[] confidentialitySlots = new SlotType1[] {
            XDSUtil.createSlot("codingScheme", domain.getConfidentialityCode().getCodingScheme()) };
    document.getClassification()
            .add(XDSUtil.createClassification(document, XdsGuidType.XDSDocumentEntry_ConfidentialityCode,
                    domain.getConfidentialityCode().getCode(), domain.getConfidentialityCode().getDisplay(),
                    confidentialitySlots));

    // To add external ids
    document.getExternalIdentifier().add(
            XDSUtil.createExternalIdentifier(document, XdsGuidType.XDSDocumentEntry_PatientId, enc.getPID()));
    String docUniqueId = String.format("%s.%s.%s", systemSourceID, "1",
            new SimpleDateFormat("yyyy.MM.dd.ss.SSS").format(now));
    document.getExternalIdentifier().add(
            XDSUtil.createExternalIdentifier(document, XdsGuidType.XDSDocumentEntry_UniqueId, docUniqueId));

    // Add to list of objects
    registryObjects.getIdentifiable()
            .add(new JAXBElement<ExtrinsicObjectType>(
                    new QName("urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0", "ExtrinsicObject"),
                    ExtrinsicObjectType.class, document));

    //TODO eventCodeList

    // Create submission set
    RegistryPackageType pkg = XDSUtil.createRegistryPackage();
    pkg.getSlot().add(XDSUtil.createSlot("submissionTime", formatter_yyyyMMdd.format(now)));

    // To add classifications
    SlotType1[] contentTypeSlots = new SlotType1[] {
            XDSUtil.createSlot("codingScheme", domain.getContentTypeCode().getCodingScheme()) };
    pkg.getClassification().add(XDSUtil.createClassification(pkg, XdsGuidType.XDSSubmissionSet_ContentType,
            domain.getContentTypeCode().getCode(), domain.getContentTypeCode().getDisplay(), contentTypeSlots));

    SlotType1[] formatSlots = new SlotType1[] {
            XDSUtil.createSlot("codingScheme", domain.getFormatCode().getCodingScheme()) };
    document.getClassification()
            .add(XDSUtil.createClassification(document, XdsGuidType.XDSDocumentEntry_FormatCode,
                    domain.getFormatCode().getCode(), domain.getFormatCode().getDisplay(), formatSlots));

    SlotType1[] healthcareFacilityTypeSlots = new SlotType1[] {
            XDSUtil.createSlot("codingScheme", domain.getHealthcareFacilityTypeCode().getCodingScheme()) };
    document.getClassification()
            .add(XDSUtil.createClassification(document, XdsGuidType.XDSDocumentEntry_HealthcareFacilityCode,
                    domain.getHealthcareFacilityTypeCode().getCode(),
                    domain.getHealthcareFacilityTypeCode().getDisplay(), healthcareFacilityTypeSlots));

    SlotType1[] practiceSettingSlots = new SlotType1[] {
            XDSUtil.createSlot("codingScheme", domain.getPracticeSettingCode().getCodingScheme()) };
    document.getClassification()
            .add(XDSUtil.createClassification(document, XdsGuidType.XDSDocumentEntry_PracticeSettingCode,
                    domain.getPracticeSettingCode().getCode(), domain.getPracticeSettingCode().getDisplay(),
                    practiceSettingSlots));

    SlotType1[] typeSlots = new SlotType1[] {
            XDSUtil.createSlot("codingScheme", domain.getTypeCode().getCodingScheme()) };
    document.getClassification()
            .add(XDSUtil.createClassification(document, XdsGuidType.XDSDocumentEntry_TypeCode,
                    domain.getTypeCode().getCode(), domain.getTypeCode().getDisplay(), typeSlots));

    // To add external ids
    pkg.getExternalIdentifier().add(
            XDSUtil.createExternalIdentifier(document, XdsGuidType.XDSSubmissionSet_PatientId, enc.getPID()));
    _uniqueId = String.format("%s.%s.%s", systemSourceID, "2",
            new SimpleDateFormat("yyyy.MM.dd.ss.SSS").format(now));
    pkg.getExternalIdentifier()
            .add(XDSUtil.createExternalIdentifier(document, XdsGuidType.XDSSubmissionSet_UniqueId, _uniqueId));
    pkg.getExternalIdentifier().add(
            XDSUtil.createExternalIdentifier(document, XdsGuidType.XDSSubmissionSet_SourceId, systemSourceID));

    // Add package to submission
    registryObjects.getIdentifiable()
            .add(new JAXBElement<RegistryPackageType>(
                    new QName("urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0", "RegistryPackage"),
                    RegistryPackageType.class, pkg));

    // Add classification for state
    registryObjects.getIdentifiable().add(new JAXBElement<ClassificationType>(
            new QName("urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0", "Classification"),
            ClassificationType.class, XDSUtil.createNodeClassification(pkg, XdsGuidType.XDSSubmissionSet)));

    // Add association
    registryObjects.getIdentifiable()
            .add(new JAXBElement<AssociationType1>(
                    new QName("urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0", "Association"),
                    AssociationType1.class, XDSUtil.createAssociation(pkg, document, "Original",
                            "urn:oasis:names:tc:ebxml-regrep:AssociationType:HasMember")));

    // Add document
    Document content = new Document();
    content.setId(document.getId());
    content.setValue(
            new DataHandler(new ByteArrayDataSource(oru_r01_request.getBytes(), "application/octet-stream")));
    xdsRequest.getDocument().add(content);

    return xdsRequest;
}

From source file:org.kitodo.dataformat.access.DivXmlElementAccess.java

/**
 * Creates a meta-data section of the specified domain of the Kitodo type
 * and returns it with its connection to the METS if there is data for it.
 *
 * @param domain//from   w w  w  . j  av a 2 s.  c  o  m
 *            Domain for which a metadata section is to be generated
 * @return a metadata section, if there is data for it
 */
static Optional<MdSecType> createMdSec(Iterable<Metadata> metadata, MdSec domain) {
    KitodoType kitodoType = new KitodoType();
    for (Metadata entry : metadata) {
        if (domain.equals(entry.getDomain())) {
            if (entry instanceof MetadataEntry) {
                kitodoType.getMetadata().add(new MetadataXmlElementAccess((MetadataEntry) entry).toMetadata());
            } else if (entry instanceof MetadataGroup) {
                kitodoType.getMetadataGroup()
                        .add(new MetadataGroupXmlElementAccess((MetadataGroup) entry).toXMLMetadataGroup());
            }
        }
    }
    if (kitodoType.getMetadata().isEmpty() && kitodoType.getMetadataGroup().isEmpty()) {
        return Optional.empty();
    } else {
        XmlData xmlData = new XmlData();
        xmlData.getAny().add(new JAXBElement<>(KITODO_QNAME, KitodoType.class, kitodoType));
        MdWrap mdWrap = new MdWrap();
        mdWrap.setXmlData(xmlData);
        MdSecType dmdSec = new MdSecType();
        dmdSec.setMdWrap(mdWrap);
        return Optional.of(dmdSec);
    }
}

From source file:org.multicore_association.measure.mem.writeback.SetResultToShim.java

/**
 * Set the value to read the existing SHIM file.
 * @return Flag for success judgements//from w  w  w  .  j  ava 2 s.  com
 * @throws ShimFileFormatException
 * @throws ShimFileGenerateException
 */
private static boolean appendToExistingShim() {
    /*
     * append to existing llvm-shim
     */
    SystemConfiguration sysConf = null;

    try {
        JAXBContext context = JAXBContext.newInstance(SystemConfiguration.class);
        Unmarshaller unmarshaller = context.createUnmarshaller();

        /* validation check setup */
        if (!shimSchemaPath.equals("")) {
            SchemaFactory sf = SchemaFactory.newInstance(javax.xml.XMLConstants.W3C_XML_SCHEMA_NS_URI);
            Schema schema = sf.newSchema(new File(shimSchemaPath));
            unmarshaller.setSchema(schema);
            unmarshaller.setEventHandler(new ValidationEventHandler() {
                @Override
                public boolean handleEvent(ValidationEvent event) {
                    if ((event.getSeverity() == ValidationEvent.FATAL_ERROR)
                            || (event.getSeverity() == ValidationEvent.ERROR)) {
                        ValidationEventLocator loc = event.getLocator();
                        parseErrList.add("    Line[" + loc.getLineNumber() + "] : " + event.getMessage());
                    }
                    return true;
                }
            });
        }

        sysConf = unmarshaller.unmarshal(new StreamSource(shimf), SystemConfiguration.class).getValue();

        if (parseErrList.size() > 0) {
            System.err.println("Error: input SHIM file validation error");

            System.err.println("    Validation error location:");
            for (int i = 0; i < parseErrList.size(); i++) {
                System.err.println(parseErrList.get(i));
            }
            return false;
        }
    } catch (Exception e) {
        System.err.println("Error: failed to parse the SHIM file, please check the contents of the file");
        e.printStackTrace();
        return false;
    }

    AddressSpaceSet addrSpaceSet = sysConf.getAddressSpaceSet();
    if (addrSpaceSet == null) {
        System.err.println("Error: failed to parse the SHIM file, please check the contents of the file");
        return false;
    }

    List<AddressSpace> addrSpaceList = addrSpaceSet.getAddressSpace();
    if (addrSpaceList == null) {
        System.err.println("Error: failed to parse the SHIM file, please check the contents of the file");
        return false;
    }

    masterComponentMap = new HashMap<String, MasterComponent>();
    slaveComponentMap = new HashMap<String, SlaveComponent>();
    accessTypeMap = new HashMap<String, AccessType>();

    List<String> route = new ArrayList<String>();
    ComponentSet cs = sysConf.getComponentSet();
    route.add(cs.getName());

    makeRefMapFromComponentSet(cs, route);

    for (int i = 0; i < measureList.size(); i++) {
        MeasurementsCSVData data = measureList.get(i);

        route.clear();

        /*
         * search AddressSpaceName
         */
        AddressSpace addrSp = null;
        for (Iterator<AddressSpace> j = addrSpaceList.iterator(); j.hasNext();) {
            AddressSpace as = j.next();

            if (as.getName() != null && as.getName().equals(data.getAddressSpaceName())) {
                addrSp = as;
                break;
            }
        }
        if (addrSp == null) {
            System.err.println("Error: Unknown 'Address Space' name (\"" + data.getAddressSpaceName() + "\").");
            return false;
        }

        route.add(addrSp.getName());

        /*
         * search SubSpaceName
         */
        SubSpace subSp = null;
        List<SubSpace> ssList = addrSp.getSubSpace();
        for (Iterator<SubSpace> j = ssList.iterator(); j.hasNext();) {
            SubSpace ss = j.next();

            route.add(ss.getName());
            String path = createPathName(route);
            route.remove(ss.getName());
            if (path != null && path.equals(data.getSubSpaceName())) {
                subSp = ss;
                break;
            }

        }
        if (subSp == null) {
            System.err.println("Error: Unknown 'Sub Space' name (\"" + data.getSubSpaceName() + "\").");
            return false;
        }

        /*
         * search SlaveComponentRef in MasterSlaveBinding
         */
        MasterSlaveBindingSet msBindSet = null;
        msBindSet = subSp.getMasterSlaveBindingSet();
        if (msBindSet == null) {
            continue;
        }

        MasterSlaveBinding msBind = null;
        List<MasterSlaveBinding> msBindList = msBindSet.getMasterSlaveBinding();
        SlaveComponent scComp = slaveComponentMap.get(data.getSlaveComponentName());
        if (scComp == null) {
            System.err.println(
                    "Error: Unknown 'Slave Comonent' name (\"" + data.getSlaveComponentName() + "\").");
            return false;
        }
        for (Iterator<MasterSlaveBinding> j = msBindList.iterator(); j.hasNext();) {
            MasterSlaveBinding msb = j.next();
            SlaveComponent sca = (SlaveComponent) msb.getSlaveComponentRef();

            if (sca != null && sca.getId().equals(scComp.getId())) {
                msBind = msb;
                break;
            }
        }
        if (msBind == null) {
            continue;
        }

        /*
         * search MasterComponentRef in Accessor
         */
        Accessor accessor = null;
        List<Accessor> acList = msBind.getAccessor();
        MasterComponent mcComp = masterComponentMap.get(data.getMasterComponentName());
        if (mcComp == null) {
            System.err.println(
                    "Error: Unknown 'Master Comonent' name (\"" + data.getMasterComponentName() + "\").");
            return false;
        }
        for (Iterator<Accessor> j = acList.iterator(); j.hasNext();) {
            Accessor ac = j.next();
            MasterComponent mc = (MasterComponent) ac.getMasterComponentRef();

            if (mc != null && mc.getId().equals(mcComp.getId())) {
                accessor = ac;
                break;
            }
        }
        if (accessor == null) {
            continue;
        }

        /*
         * search PerformanceSet
         */
        PerformanceSet perfrmSet = null;

        if (accessor.getPerformanceSet().size() != 0) {
            perfrmSet = accessor.getPerformanceSet().get(0);
        }
        if (perfrmSet == null) {
            continue;
        }

        /*
         * search Performance
         */
        List<Performance> pfrmList = perfrmSet.getPerformance();
        AccessType atComp = accessTypeMap.get(data.getAccessTypeName());
        if (atComp == null) {
            System.err.println("Error: Unknown 'Access Type' name (\"" + data.getAccessTypeName() + "\").");
            return false;
        }
        for (Iterator<Performance> j = pfrmList.iterator(); j.hasNext();) {
            Performance pfm = j.next();
            AccessType at = (AccessType) pfm.getAccessTypeRef();

            if (at != null && at.getId().equals(atComp.getId())) {
                Latency latency = new Latency();
                Pitch pitch = new Pitch();

                latency.setBest(data.getBestLatency());
                latency.setWorst(data.getWorstLatency());
                latency.setTypical(data.getTypicalLatency());
                pitch.setBest(data.getBestPitch());
                pitch.setWorst(data.getWorstPitch());
                pitch.setTypical(data.getTypicalPitch());

                pfm.setLatency(latency);
                pfm.setPitch(pitch);
                break;
            }
        }
    }

    try {
        JAXBContext context = JAXBContext.newInstance(SystemConfiguration.class.getPackage().getName());

        Marshaller marshaller = context.createMarshaller();
        /* validation check setup */
        if (!shimSchemaPath.equals("")) {
            SchemaFactory sf = SchemaFactory.newInstance(javax.xml.XMLConstants.W3C_XML_SCHEMA_NS_URI);
            Schema schema = sf.newSchema(new File(shimSchemaPath));
            marshaller.setSchema(schema);
        }
        QName qname = new QName("", "SystemConfiguration");

        JAXBElement<SystemConfiguration> elem = new JAXBElement<SystemConfiguration>(qname,
                SystemConfiguration.class, sysConf);

        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
        //         marshaller.marshal(elem, new PrintStream(shimf));
        marshaller.marshal(elem, System.out);
    } catch (JAXBException e) {
        e.printStackTrace();
        System.err.println("Error: exception occurs in SHIM file generation"); //$NON-NLS-1$
        return false;
    } catch (SAXException e) {
        e.printStackTrace();
        System.err.println("Error: output SHIM file validation error"); //$NON-NLS-1$
        return false;
    }

    return true;
}

From source file:org.netbeans.jbatch.modeler.specification.model.job.util.JobUtil.java

public void saveModelerFile(ModelerFile modelerFile) {

    Definitions definitions = (Definitions) modelerFile.getDefinitionElement();

    try {/*w w  w. ja  va  2 s . c o m*/
        updateBatchDiagram(modelerFile);
        List<String> closeDefinitionIdList = closeDiagram(modelerFile, definitions.getGarbageDefinitions());
        List<String> definitionIdList = new ArrayList<String>(closeDefinitionIdList);
        //            definitionIdList.addAll(definitions.getGarbageDefinitions());
        definitionIdList.add(definitions.getId());
        File savedFile = modelerFile.getFile();

        BufferedReader br = new BufferedReader(new FileReader(savedFile));
        String line = null;
        while ((line = br.readLine()) != null) {
            System.out.println("savedFile : " + line);
        }

        File cloneSavedFile = File.createTempFile("TMP", "job");
        FileUtils.copyFile(savedFile, cloneSavedFile);
        //            br = new BufferedReader(new FileReader(cloneSavedFile));
        //            line = null;
        //            while ((line = br.readLine()) != null) {
        //                System.out.println("line2 : " + line);
        //            }

        XMLOutputFactory xof = XMLOutputFactory.newFactory();
        XMLStreamWriter xsw = xof.createXMLStreamWriter(new FileWriter(savedFile));
        xsw.setDefaultNamespace("http://jbatchsuite.java.net");

        xsw.writeStartDocument();
        xsw.writeStartElement("jbatchnb", "root", "http://jbatchsuite.java.net");
        xsw.writeNamespace("jbatch", "http://xmlns.jcp.org/xml/ns/javaee");
        xsw.writeNamespace("jbatchnb", "http://jbatchsuite.java.net");
        xsw.writeNamespace("xsi", "http://www.w3.org/2001/XMLSchema-instance");
        xsw.writeNamespace("java", "http://jcp.org/en/jsr/detail?id=270");
        xsw.writeNamespace("nbm", "http://nbmodeler.java.net");

        //            br = new BufferedReader(new FileReader(savedFile));
        //            line = null;
        //            while ((line = br.readLine()) != null) {
        //                System.out.println("line3 : " + line);
        //            }
        if (cloneSavedFile.length() != 0) {
            try {
                XMLInputFactory xif = XMLInputFactory.newFactory();
                StreamSource xml = new StreamSource(cloneSavedFile);
                XMLStreamReader xsr = xif.createXMLStreamReader(xml);
                xsr.nextTag();
                while (xsr.getEventType() == XMLStreamConstants.START_ELEMENT) {
                    //                        Def   Y    N
                    //                        Tag   N(D) Y(D)
                    //                        ________________
                    //                              T    T
                    //                        ----------------
                    //
                    //                        Def   Y    N
                    //                        Tag   Y(S) N(S)
                    //                        ________________
                    //                              S    S
                    //                        ----------------
                    //
                    //                        Def   Y    N
                    //                        Tag   Y(D) N(S)
                    //                        ________________
                    //                              T    S
                    //                        ----------------
                    //
                    //                       (D) => Different
                    //                       (S) => Same
                    //                        Y => Id Exist
                    //                        N => Id is null
                    //                        T => Transform
                    //                        S => Skip

                    if (xsr.getLocalName().equals("definitions")) {
                        //                            if (definitions.getId() == null) {
                        //                                if (xsr.getAttributeValue(null, "id") != null) {
                        //                                    transformXMLStream(xsr, xsw);
                        //                                } else {
                        //                                    skipXMLStream(xsr);
                        //                                }
                        //                            } else {
                        if (xsr.getAttributeValue(null, "id") == null) {
                            if (definitions.getId() == null) {
                                skipXMLStream(xsr);
                            } else {
                                transformXMLStream(xsr, xsw);
                            }
                        } else {
                            if (!definitionIdList.contains(xsr.getAttributeValue(null, "id"))) {
                                transformXMLStream(xsr, xsw);
                            } else {
                                skipXMLStream(xsr);
                            }
                        }
                        //                            }
                    }
                    xsr.nextTag();
                }
            } catch (XMLStreamException ex) {
                Exceptions.printStackTrace(ex);
            }
        }

        JAXBElement<Definitions> je = new JAXBElement<Definitions>(
                new QName("http://jbatchsuite.java.net", "definitions", "jbatchnb"), Definitions.class,
                definitions);
        if (jobContext == null) {
            jobContext = JAXBContext.newInstance(new Class<?>[] { ShapeDesign.class, Definitions.class });
        }
        if (jobMarshaller == null) {
            jobMarshaller = jobContext.createMarshaller();
        }

        // output pretty printed
        jobMarshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
        jobMarshaller.setProperty(Marshaller.JAXB_FRAGMENT, Boolean.TRUE);
        //          jobMarshaller.setProperty(Marshaller.JAXB_SCHEMA_LOCATION, "http://www.omg.org/spec/Batch/20100524/MODEL http://www.omg.org/spec/Batch/2.0/20100501/Batch20.xsd");
        jobMarshaller.setEventHandler(new ValidateJAXB());
        jobMarshaller.marshal(je, System.out);
        jobMarshaller.marshal(je, xsw);

        //            xsw.writeEndElement();
        xsw.writeEndDocument();
        xsw.close();

        //            StringWriter sw = new StringWriter();
        //            jobMarshaller.marshal(file.getDefinitionElement(), sw);
        //            FileUtils.writeStringToFile(savedFile, sw.toString().replaceFirst("xmlns:ns[A-Za-z\\d]{0,3}=\"http://www.omg.org/spec/Batch/20100524/MODEL\"",
        //                    "xmlns=\"http://www.omg.org/spec/Batch/20100524/MODEL\""));
    } catch (JAXBException ex) {
        Exceptions.printStackTrace(ex);
    } catch (IOException ex) {
        Exceptions.printStackTrace(ex);
    } catch (XMLStreamException ex) {
        Exceptions.printStackTrace(ex);
    }

}

From source file:org.openengsb.core.common.remote.XmlMethodCallMarshalOutgoingFilter.java

private Document serializeRequest(MethodCallMessage result) {
    DOMResult domResult = new DOMResult();
    try {//from  w ww.j a va  2s  .com
        @SuppressWarnings("unchecked")
        List<Class<?>> classes = ClassUtils.convertClassNamesToClasses(result.getMethodCall().getClasses());
        if (classes.contains(null)) {
            throw new FilterException("Could not load all required classes. Require: "
                    + result.getMethodCall().getClasses() + " got: " + classes);
        }
        classes.add(MethodCallMessage.class);
        JAXBContext jaxbContext = JAXBContext.newInstance(classes.toArray(new Class<?>[classes.size()]));
        Marshaller marshaller = jaxbContext.createMarshaller();
        marshaller
                .marshal(new JAXBElement<MethodCallMessage>(new QName(MethodCallMessage.class.getSimpleName()),
                        MethodCallMessage.class, result), domResult);
    } catch (JAXBException e) {
        throw new FilterException(e);
    }
    return (Document) domResult.getNode();
}

From source file:org.openhie.openempi.nhinadapter.hl7.Hl7ConversionHelper.java

private JAXBElement<PRPAMT201310UV02Person> createPatientPersonFromPerson(Person person,
        PRPAIN201305UV02 request) {//  w  w w . jav  a 2s.  c  om
    PRPAMT201310UV02Person thePerson = new PRPAMT201310UV02Person();
    PNExplicit name = Utilities.generatePnExplicit(person.getGivenName(), person.getFamilyName());
    thePerson.getName().add(name);
    thePerson
            .setAdministrativeGenderCode(Utilities.generateCe(getAdministrativeGenderCode(person.getGender())));
    thePerson.setBirthTime(Utilities.generateTSExplicit(person.getDateOfBirth()));

    // If the adapter is configured to return the phone number and we have, it add it to the message.
    if (allowTelecomResponseAttribute && person.getPhoneNumber() != null) {
        thePerson.getTelecom().add(Utilities.generateTELExplicit(person));
    }

    // If the adapter is configured to return the address and we have it, add it to the message
    if (allowAddressResponseAttribute) {
        ADExplicit address = Utilities.generateADExplicit(person.getAddress1(), person.getCity(),
                person.getState(), person.getPostalCode());
        if (address != null) {
            thePerson.getAddr().add(address);
        }
    }

    if (allowSocialSecurityNumberResponseAttribute && Utilities.isNotNullish(person.getSsn())) {
        thePerson.getAsOtherIDs().add(generateSsnAsOtherId(person));
    }

    javax.xml.namespace.QName xmlqname = new javax.xml.namespace.QName("urn:hl7-org:v3", "patientPerson");
    JAXBElement<PRPAMT201310UV02Person> jaxbPerson = new JAXBElement<PRPAMT201310UV02Person>(xmlqname,
            PRPAMT201310UV02Person.class, thePerson);

    return jaxbPerson;
}

From source file:org.openhie.openempi.nhinadapter.hl7.Utilities.java

public static MCCIMT000300UV01Receiver generateMCCIMT00300UV01Receiver(MCCIMT000100UV01Sender sender) {

    MCCIMT000300UV01Receiver receiver = new MCCIMT000300UV01Receiver();
    II oid = null;// www .  j av  a  2  s.  c om

    receiver.setTypeCode(CommunicationFunctionType.RCV);

    if (sender.getDevice() != null && sender.getDevice().getAsAgent() != null
            && sender.getDevice().getAsAgent().getValue() != null
            && sender.getDevice().getAsAgent().getValue().getRepresentedOrganization() != null
            && sender.getDevice().getAsAgent().getValue().getRepresentedOrganization().getValue() != null
            && isNotNullish(
                    sender.getDevice().getAsAgent().getValue().getRepresentedOrganization().getValue().getId())
            && sender.getDevice().getAsAgent().getValue().getRepresentedOrganization().getValue().getId()
                    .get(0) != null
            && isNotNullish(sender.getDevice().getAsAgent().getValue().getRepresentedOrganization().getValue()
                    .getId().get(0).getRoot())) {
        oid = sender.getDevice().getAsAgent().getValue().getRepresentedOrganization().getValue().getId().get(0);
    }

    String senderDeviceIdRoot = "1.2.345.678.999";
    if (sender.getDevice() != null && sender.getDevice().getId() != null
            && sender.getDevice().getId().size() > 0 && sender.getDevice().getId().get(0) != null
            && sender.getDevice().getId().get(0).getRoot() != null) {
        senderDeviceIdRoot = sender.getDevice().getId().get(0).getRoot();
    }

    MCCIMT000300UV01Device receiverDevice = new MCCIMT000300UV01Device();
    receiverDevice.setClassCode(EntityClassDevice.DEV);
    receiverDevice.setDeterminerCode(ConversionConstants.ENTITY_DETERMINER_CODE_INSTANCE);
    log.debug("Setting receiver application to " + senderDeviceIdRoot);
    receiverDevice.getId().add(generateHl7Id(senderDeviceIdRoot, null));

    MCCIMT000300UV01Agent agent = new MCCIMT000300UV01Agent();
    MCCIMT000300UV01Organization org = new MCCIMT000300UV01Organization();
    org.setClassCode(ConversionConstants.ENTITY_CLASS_CODE_ORG);
    org.setDeterminerCode(ConversionConstants.ENTITY_DETERMINER_CODE_INSTANCE);
    org.getId().add(oid);

    javax.xml.namespace.QName xmlqnameorg = new javax.xml.namespace.QName("urn:hl7-org:v3",
            "representedOrganization");
    JAXBElement<MCCIMT000300UV01Organization> orgElem = new JAXBElement<MCCIMT000300UV01Organization>(
            xmlqnameorg, MCCIMT000300UV01Organization.class, org);
    agent.setRepresentedOrganization(orgElem);
    agent.getClassCode().add(ConversionConstants.ROLE_CLASS_AGENT);

    javax.xml.namespace.QName xmlqnameagent = new javax.xml.namespace.QName("urn:hl7-org:v3", "asAgent");
    JAXBElement<MCCIMT000300UV01Agent> agentElem = new JAXBElement<MCCIMT000300UV01Agent>(xmlqnameagent,
            MCCIMT000300UV01Agent.class, agent);

    receiverDevice.setAsAgent(agentElem);
    receiver.setDevice(receiverDevice);
    return receiver;
}

From source file:org.openhie.openempi.nhinadapter.hl7.Utilities.java

public static MCCIMT000300UV01Sender generateMCCIMT00300UV01Sender(List<MCCIMT000100UV01Receiver> receivers) {
    MCCIMT000300UV01Sender sender = new MCCIMT000300UV01Sender();
    if (receivers == null || receivers.size() == 0 || receivers.get(0) == null) {
        log.error("Unable to generate message since receiver entry is missing: " + receivers);
        return sender;
    }/*w  ww.j a  va2s  .  c om*/
    MCCIMT000100UV01Receiver receiver = receivers.get(0);
    sender.setTypeCode(CommunicationFunctionType.SND);

    MCCIMT000300UV01Device device = new MCCIMT000300UV01Device();
    device.setDeterminerCode("INSTANCE");

    II oid = null;
    if (receiver.getDevice() != null && receiver.getDevice().getAsAgent() != null
            && receiver.getDevice().getAsAgent().getValue() != null
            && receiver.getDevice().getAsAgent().getValue().getRepresentedOrganization() != null
            && receiver.getDevice().getAsAgent().getValue().getRepresentedOrganization().getValue() != null
            && isNotNullish(receiver.getDevice().getAsAgent().getValue().getRepresentedOrganization().getValue()
                    .getId())
            && receiver.getDevice().getAsAgent().getValue().getRepresentedOrganization().getValue().getId()
                    .get(0) != null) {
        oid = receiver.getDevice().getAsAgent().getValue().getRepresentedOrganization().getValue().getId()
                .get(0);
    }

    MCCIMT000300UV01Device senderDevice = new MCCIMT000300UV01Device();
    senderDevice.setClassCode(EntityClassDevice.DEV);
    senderDevice.setDeterminerCode(ConversionConstants.ENTITY_DETERMINER_CODE_INSTANCE);
    String receiverDeviceIdRoot = "1.2.345.678.999";
    if (receiver.getDevice() != null && receiver.getDevice().getId() != null
            && receiver.getDevice().getId().size() > 0 && receiver.getDevice().getId().get(0) != null
            && receiver.getDevice().getId().get(0).getRoot() != null) {
        receiverDeviceIdRoot = receiver.getDevice().getId().get(0).getRoot();
    }
    log.debug("Setting sender OID to " + receiverDeviceIdRoot);
    senderDevice.getId().add(generateHl7Id(receiverDeviceIdRoot, null));

    MCCIMT000300UV01Agent agent = new MCCIMT000300UV01Agent();
    MCCIMT000300UV01Organization org = new MCCIMT000300UV01Organization();
    org.setClassCode(ConversionConstants.ENTITY_CLASS_CODE_ORG);
    org.setDeterminerCode(ConversionConstants.ENTITY_DETERMINER_CODE_INSTANCE);
    org.getId().add(oid);

    javax.xml.namespace.QName xmlqnameorg = new javax.xml.namespace.QName("urn:hl7-org:v3",
            "representedOrganization");
    JAXBElement<MCCIMT000300UV01Organization> orgElem = new JAXBElement<MCCIMT000300UV01Organization>(
            xmlqnameorg, MCCIMT000300UV01Organization.class, org);
    agent.setRepresentedOrganization(orgElem);
    agent.getClassCode().add(ConversionConstants.CLASS_CODE_AGENT);

    javax.xml.namespace.QName xmlqnameagent = new javax.xml.namespace.QName("urn:hl7-org:v3", "asAgent");
    JAXBElement<MCCIMT000300UV01Agent> agentElem = new JAXBElement<MCCIMT000300UV01Agent>(xmlqnameagent,
            MCCIMT000300UV01Agent.class, agent);

    senderDevice.setAsAgent(agentElem);
    sender.setDevice(senderDevice);
    return sender;
}

From source file:org.openhie.openempi.openpixpdq.v3.util.Hl7ConversionHelper.java

private static JAXBElement<PRPAMT201310UV02Person> createPatientPersonFromPerson(Patient person,
        PRPAIN201305UV02 request) {/*  www  . ja v  a 2s  .  c o  m*/
    PRPAMT201310UV02Person thePerson = new PRPAMT201310UV02Person();
    PNExplicit name = Utilities.generatePnExplicit(person.getPatientName().getFirstName(),
            person.getPatientName().getLastName());
    thePerson.getName().add(name);
    if (person.getAdministrativeSex() != null) {
        thePerson
                .setAdministrativeGenderCode(Utilities.generateCe(person.getAdministrativeSex().getCDAValue()));
    }
    if (person.getBirthDateTime() != null) {
        thePerson.setBirthTime(Utilities.generateTSExplicit(person.getBirthDateTime().getTime()));
    }

    // If the adapter is configured to return the phone number and we have, it add it to the message.
    if (allowTelecomResponseAttribute && person.getPhoneNumbers() != null) {
        thePerson.getTelecom().add(Utilities.generateTELExplicit(person));
    }

    // If the adapter is configured to return the address and we have it, add it to the message
    if (allowAddressResponseAttribute) {
        Address addressPerson = person.getAddresses().get(0);
        ADExplicit address = Utilities.generateADExplicit(addressPerson.getAddLine1(),
                addressPerson.getAddCity(), addressPerson.getAddState(), addressPerson.getAddZip());
        if (address != null) {
            thePerson.getAddr().add(address);
        }
    }

    if (allowSocialSecurityNumberResponseAttribute && Utilities.isNotNullish(person.getSsn())) {
        thePerson.getAsOtherIDs().add(generateSsnAsOtherId(person));
    }

    javax.xml.namespace.QName xmlqname = new javax.xml.namespace.QName("urn:hl7-org:v3", "patientPerson");
    JAXBElement<PRPAMT201310UV02Person> jaxbPerson = new JAXBElement<PRPAMT201310UV02Person>(xmlqname,
            PRPAMT201310UV02Person.class, thePerson);

    return jaxbPerson;
}