List of usage examples for javax.swing JTextArea getText
public String getText()
TextComponent. From source file:cool.pandora.modeller.ui.jpanel.base.BagInfoForm.java
/** * getBagInfoMap.//ww w . j ava 2 s .c om * * @return map */ public HashMap<String, String> getBagInfoMap() { final HashMap<String, String> map = new HashMap<>(); String key = ""; String value = ""; final Component[] components = getFieldComponents(); for (int i = 0; i < components.length; i++) { Component c; c = components[i]; if (c instanceof JLabel) { final JLabel label = (JLabel) c; key = label.getText(); } i++; // Is required component c = components[i]; i++; c = components[i]; if (c instanceof JTextField) { final JTextField tf = (JTextField) c; value = tf.getText(); } else if (c instanceof JTextArea) { final JTextArea ta = (JTextArea) c; value = ta.getText(); } else if (c instanceof JComboBox) { final JComboBox<?> tb = (JComboBox<?>) c; value = (String) tb.getSelectedItem(); } map.put(key, value); i++; c = components[i]; } return map; }
From source file:CubaHSQLDBServer.java
private void addCopyPopup(final JTextArea source) { final JPopupMenu popup = new JPopupMenu(); popup.add(new AbstractAction("Copy to clipboard") { @Override/*from www .j a va 2 s . c o m*/ public void actionPerformed(ActionEvent e) { StringSelection contents = new StringSelection(source.getText()); Toolkit.getDefaultToolkit().getSystemClipboard().setContents(contents, contents); } }); source.add(popup); source.addMouseListener(new MouseAdapter() { @Override public void mousePressed(MouseEvent e) { if (e.isPopupTrigger()) { popup.show(source, e.getX(), e.getY()); } } @Override public void mouseReleased(MouseEvent e) { if (e.isPopupTrigger()) { popup.show(source, e.getX(), e.getY()); } } }); }
From source file:com.hexidec.ekit.component.HTMLUtilities.java
public void delete() throws BadLocationException, IOException { JTextPane jtpMain = parent.getTextPane(); JTextArea jtpSource = parent.getSourcePane(); ExtendedHTMLDocument htmlDoc = parent.getExtendedHtmlDoc(); int selStart = jtpMain.getSelectionStart(); int selEnd = jtpMain.getSelectionEnd(); String[] posStrings = getUniString(2); if (posStrings == null) { return;/*from w w w . j a va2s. c om*/ } htmlDoc.insertString(selStart, posStrings[0], null); htmlDoc.insertString(selEnd + posStrings[0].length(), posStrings[1], null); parent.refreshOnUpdate(); int start = jtpSource.getText().indexOf(posStrings[0]); int end = jtpSource.getText().indexOf(posStrings[1]); if (start == -1 || end == -1) { return; } String htmlString = new String(); htmlString += jtpSource.getText().substring(0, start); htmlString += jtpSource.getText().substring(start + posStrings[0].length(), end); htmlString += jtpSource.getText().substring(end + posStrings[1].length(), jtpSource.getText().length()); String source = htmlString; end = end - posStrings[0].length(); htmlString = new String(); htmlString += source.substring(0, start); htmlString += getAllTableTags(source.substring(start, end)); htmlString += source.substring(end, source.length()); parent.getTextPane().setText(htmlString); parent.refreshOnUpdate(); }
From source file:hermes.renderers.DefaultMessageRenderer.java
/** * Show the TextMessage in a JTextArea./*from w ww . ja v a2s.c o m*/ * * @param textMessage * @return * @throws JMSException */ protected JComponent handleTextMessage(final TextMessage textMessage) throws JMSException { // // Show the text in a JTextArea, you can edit the message in place and // then drop it onto another queue/topic. final String text = textMessage.getText(); final JTextArea textPane = new JTextArea(); // final CharBuffer bytes = CharBuffer.wrap(text.subSequence(0, // text.length())) ; // final JTextArea textPane = new MyTextArea(new PlainDocument(new // MappedStringContent(bytes))) ; textPane.setEditable(false); textPane.setFont(Font.decode("Monospaced-PLAIN-12")); textPane.setLineWrap(true); textPane.setWrapStyleWord(true); textPane.append(text); textPane.getDocument().addDocumentListener(new DocumentListener() { public void doChange() { try { textMessage.setText(textPane.getText()); } catch (JMSException e) { JOptionPane.showMessageDialog(textPane, "Unable to update the TextMessage: " + e.getMessage(), "Error modifying message content", JOptionPane.ERROR_MESSAGE); try { textPane.setText(textMessage.getText()); } catch (JMSException e1) { log.error(e1.getMessage(), e1); } textPane.setEditable(false); textPane.getDocument().removeDocumentListener(this); } } @Override public void changedUpdate(DocumentEvent arg0) { doChange(); } @Override public void insertUpdate(DocumentEvent arg0) { doChange(); } @Override public void removeUpdate(DocumentEvent arg0) { doChange(); } }); textPane.setCaretPosition(0); return textPane; }
From source file:com.haulmont.cuba.desktop.gui.components.DesktopTextArea.java
@Override protected JTextArea createTextComponentImpl() { final JTextArea impl = new TextAreaFlushableField(); if (isTabTraversal()) { Set<KeyStroke> forwardFocusKey = Collections.singleton(getKeyStroke(KeyEvent.VK_TAB, 0)); impl.setFocusTraversalKeys(KeyboardFocusManager.FORWARD_TRAVERSAL_KEYS, forwardFocusKey); Set<KeyStroke> backwardFocusKey = Collections .singleton(getKeyStroke(KeyEvent.VK_TAB, KeyEvent.SHIFT_MASK)); impl.setFocusTraversalKeys(KeyboardFocusManager.BACKWARD_TRAVERSAL_KEYS, backwardFocusKey); impl.addKeyListener(new KeyAdapter() { @Override/* w w w .j av a 2s. com*/ public void keyPressed(KeyEvent e) { if (isEnabled() && isEditable() && e.getKeyCode() == KeyEvent.VK_TAB && e.getModifiers() == KeyEvent.CTRL_MASK) { if (StringUtils.isEmpty(impl.getText())) { impl.setText("\t"); } else { impl.append("\t"); } } } }); } impl.setLineWrap(true); impl.setWrapStyleWord(true); int height = (int) impl.getPreferredSize().getHeight(); impl.setMinimumSize(new Dimension(0, height)); composition = new JScrollPane(impl); composition.setPreferredSize(new Dimension(150, height)); composition.setMinimumSize(new Dimension(0, height)); doc.putProperty("filterNewlines", false); return impl; }
From source file:hspc.submissionsprogram.AppDisplay.java
AppDisplay() {
this.setTitle("Dominion High School Programming Contest");
this.setDefaultCloseOperation(JFrame.DO_NOTHING_ON_CLOSE);
this.setResizable(false);
WindowListener exitListener = new WindowAdapter() {
@Override/*from www. j a v a 2s .c o m*/
public void windowClosing(WindowEvent e) {
System.exit(0);
}
};
this.addWindowListener(exitListener);
JTabbedPane pane = new JTabbedPane();
this.add(pane);
JPanel submitPanel = new JPanel(null);
submitPanel.setPreferredSize(new Dimension(500, 500));
UIManager.put("FileChooser.readOnly", true);
JFileChooser fileChooser = new JFileChooser();
fileChooser.setBounds(0, 0, 500, 350);
fileChooser.setVisible(true);
FileNameExtensionFilter javaFilter = new FileNameExtensionFilter("Java files (*.java)", "java");
fileChooser.setFileFilter(javaFilter);
fileChooser.setAcceptAllFileFilterUsed(false);
fileChooser.setControlButtonsAreShown(false);
submitPanel.add(fileChooser);
JSeparator separator1 = new JSeparator();
separator1.setBounds(12, 350, 476, 2);
separator1.setForeground(new Color(122, 138, 152));
submitPanel.add(separator1);
JLabel problemChooserLabel = new JLabel("Problem:");
problemChooserLabel.setBounds(12, 360, 74, 25);
submitPanel.add(problemChooserLabel);
String[] listOfProblems = Main.Configuration.get("problem_names")
.split(Main.Configuration.get("name_delimiter"));
JComboBox problems = new JComboBox<>(listOfProblems);
problems.setBounds(96, 360, 393, 25);
submitPanel.add(problems);
JButton submit = new JButton("Submit");
submit.setBounds(170, 458, 160, 30);
submit.addActionListener(e -> {
try {
File file = fileChooser.getSelectedFile();
try {
CloseableHttpClient httpClient = HttpClients.createDefault();
HttpPost uploadFile = new HttpPost(Main.Configuration.get("submit_url"));
MultipartEntityBuilder builder = MultipartEntityBuilder.create();
builder.addTextBody("accountID", Main.accountID, ContentType.TEXT_PLAIN);
builder.addTextBody("problem", String.valueOf(problems.getSelectedItem()),
ContentType.TEXT_PLAIN);
builder.addBinaryBody("submission", file, ContentType.APPLICATION_OCTET_STREAM, file.getName());
HttpEntity multipart = builder.build();
uploadFile.setEntity(multipart);
CloseableHttpResponse response = httpClient.execute(uploadFile);
HttpEntity responseEntity = response.getEntity();
String inputLine;
BufferedReader br = new BufferedReader(new InputStreamReader(responseEntity.getContent()));
try {
if ((inputLine = br.readLine()) != null) {
int rowIndex = Integer.parseInt(inputLine);
new ResultWatcher(rowIndex);
}
br.close();
} catch (IOException ex) {
ex.printStackTrace();
}
} catch (Exception ex) {
ex.printStackTrace();
}
} catch (NullPointerException ex) {
JOptionPane.showMessageDialog(this, "No file selected.\nPlease select a java file.", "Error",
JOptionPane.WARNING_MESSAGE);
}
});
submitPanel.add(submit);
JPanel clarificationsPanel = new JPanel(null);
clarificationsPanel.setPreferredSize(new Dimension(500, 500));
cList = new JList<>();
cList.setBounds(12, 12, 476, 200);
cList.setBorder(new CompoundBorder(BorderFactory.createLineBorder(new Color(122, 138, 152)),
BorderFactory.createEmptyBorder(8, 8, 8, 8)));
cList.setBackground(new Color(254, 254, 255));
clarificationsPanel.add(cList);
JButton viewC = new JButton("View");
viewC.setBounds(12, 224, 232, 25);
viewC.addActionListener(e -> {
if (cList.getSelectedIndex() != -1) {
int id = Integer.parseInt(cList.getSelectedValue().split("\\.")[0]);
clarificationDatas.stream().filter(data -> data.getId() == id).forEach(
data -> new ClarificationDisplay(data.getProblem(), data.getText(), data.getResponse()));
}
});
clarificationsPanel.add(viewC);
JButton refreshC = new JButton("Refresh");
refreshC.setBounds(256, 224, 232, 25);
refreshC.addActionListener(e -> updateCList(true));
clarificationsPanel.add(refreshC);
JSeparator separator2 = new JSeparator();
separator2.setBounds(12, 261, 476, 2);
separator2.setForeground(new Color(122, 138, 152));
clarificationsPanel.add(separator2);
JLabel problemChooserLabelC = new JLabel("Problem:");
problemChooserLabelC.setBounds(12, 273, 74, 25);
clarificationsPanel.add(problemChooserLabelC);
JComboBox problemsC = new JComboBox<>(listOfProblems);
problemsC.setBounds(96, 273, 393, 25);
clarificationsPanel.add(problemsC);
JTextArea textAreaC = new JTextArea();
textAreaC.setLineWrap(true);
textAreaC.setWrapStyleWord(true);
textAreaC.setBorder(new CompoundBorder(BorderFactory.createLineBorder(new Color(122, 138, 152)),
BorderFactory.createEmptyBorder(8, 8, 8, 8)));
textAreaC.setBackground(new Color(254, 254, 255));
JScrollPane areaScrollPane = new JScrollPane(textAreaC);
areaScrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
areaScrollPane.setBounds(12, 312, 477, 134);
clarificationsPanel.add(areaScrollPane);
JButton submitC = new JButton("Submit Clarification");
submitC.setBounds(170, 458, 160, 30);
submitC.addActionListener(e -> {
if (textAreaC.getText().length() > 2048) {
JOptionPane.showMessageDialog(this,
"Clarification body is too long.\nMaximum of 2048 characters allowed.", "Error",
JOptionPane.WARNING_MESSAGE);
} else if (textAreaC.getText().length() < 20) {
JOptionPane.showMessageDialog(this,
"Clarification body is too short.\nClarifications must be at least 20 characters, but no more than 2048.",
"Error", JOptionPane.WARNING_MESSAGE);
} else {
Connection conn = null;
PreparedStatement stmt = null;
try {
Class.forName(JDBC_DRIVER);
conn = DriverManager.getConnection(Main.Configuration.get("jdbc_mysql_address"),
Main.Configuration.get("mysql_user"), Main.Configuration.get("mysql_pass"));
String sql = "INSERT INTO clarifications (team, problem, text) VALUES (?, ?, ?)";
stmt = conn.prepareStatement(sql);
stmt.setInt(1, Integer.parseInt(String.valueOf(Main.accountID)));
stmt.setString(2, String.valueOf(problemsC.getSelectedItem()));
stmt.setString(3, String.valueOf(textAreaC.getText()));
textAreaC.setText("");
stmt.executeUpdate();
stmt.close();
conn.close();
updateCList(false);
} catch (Exception ex) {
ex.printStackTrace();
} finally {
try {
if (stmt != null) {
stmt.close();
}
} catch (Exception ex2) {
ex2.printStackTrace();
}
try {
if (conn != null) {
conn.close();
}
} catch (Exception ex2) {
ex2.printStackTrace();
}
}
}
});
clarificationsPanel.add(submitC);
pane.addTab("Submit", submitPanel);
pane.addTab("Clarifications", clarificationsPanel);
Timer timer = new Timer();
TimerTask updateTask = new TimerTask() {
@Override
public void run() {
updateCList(false);
}
};
timer.schedule(updateTask, 10000, 10000);
updateCList(false);
this.pack();
this.setLocationRelativeTo(null);
this.setVisible(true);
}
From source file:edu.smc.mediacommons.panels.SecurityPanel.java
public SecurityPanel() { setLayout(null);/*from www . jav a 2s . c o m*/ FILE_CHOOSER = new JFileChooser(); JButton openFile = Utils.createButton("Open File", 10, 20, 100, 30, null); add(openFile); JButton saveFile = Utils.createButton("Save File", 110, 20, 100, 30, null); add(saveFile); JButton decrypt = Utils.createButton("Decrypt", 210, 20, 100, 30, null); add(decrypt); JButton encrypt = Utils.createButton("Encrypt", 310, 20, 100, 30, null); add(encrypt); JTextField path = Utils.createTextField(10, 30, 300, 20); path.setText("No file selected"); final JTextArea viewer = new JTextArea(); JScrollPane pastePane = new JScrollPane(viewer); pastePane.setBounds(15, 60, 400, 200); add(pastePane); openFile.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent e) { if (FILE_CHOOSER.showOpenDialog(getParent()) == JFileChooser.APPROVE_OPTION) { File toRead = FILE_CHOOSER.getSelectedFile(); if (toRead == null) { JOptionPane.showMessageDialog(getParent(), "The input file does not exist!", "Opening Failed...", JOptionPane.WARNING_MESSAGE); } else { try { List<String> lines = IOUtils.readLines(new FileInputStream(toRead), "UTF-8"); viewer.setText(""); for (String line : lines) { viewer.append(line); } } catch (IOException ex) { } } } } }); saveFile.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent e) { if (FILE_CHOOSER.showSaveDialog(getParent()) == JFileChooser.APPROVE_OPTION) { File toWrite = FILE_CHOOSER.getSelectedFile(); Utils.writeToFile(viewer.getText(), toWrite); JOptionPane.showMessageDialog(getParent(), "The file has now been saved to\n" + toWrite.getPath()); } } }); encrypt.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent e) { String password = Utils.getPasswordInput(getParent()); if (password != null) { try { BasicTextEncryptor basicTextEncryptor = new BasicTextEncryptor(); basicTextEncryptor.setPassword(password); String text = basicTextEncryptor.encrypt(viewer.getText()); viewer.setText(text); } catch (Exception ex) { JOptionPane.showMessageDialog(getParent(), "Could not encrypt the text, an unexpected error occurred.", "Encryption Failed...", JOptionPane.WARNING_MESSAGE); } } else { JOptionPane.showMessageDialog(getParent(), "Could not encrypt the text, as no\npassword has been specified.", "Encryption Failed...", JOptionPane.WARNING_MESSAGE); } } }); decrypt.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent e) { String password = Utils.getPasswordInput(getParent()); if (password != null) { try { BasicTextEncryptor basicTextEncryptor = new BasicTextEncryptor(); basicTextEncryptor.setPassword(password); String text = basicTextEncryptor.decrypt(viewer.getText()); viewer.setText(text); } catch (Exception ex) { JOptionPane.showMessageDialog(getParent(), "Could not decrypt the text, an unexpected error occurred.", "Decryption Failed...", JOptionPane.WARNING_MESSAGE); } } else { JOptionPane.showMessageDialog(getParent(), "Could not decrypt the text, as no\npassword has been specified.", "Decryption Failed...", JOptionPane.WARNING_MESSAGE); } } }); }
From source file:edu.ku.brc.specify.config.FeedBackDlg.java
@Override protected FeedBackSenderItem getFeedBackSenderItem(final Class<?> cls, final Exception exception) { CellConstraints cc = new CellConstraints(); PanelBuilder pb = new PanelBuilder(new FormLayout("p,2px,p,f:p:g", "p,4px,p,4px,p,4px,p,4px,f:p:g")); Vector<String> taskItems = new Vector<String>(); for (Taskable task : TaskMgr.getInstance().getAllTasks()) { taskItems.add(task.getTitle());//w ww .jav a 2 s. c o m } String[] OTHERS = { "WEBSITE", "CSTSUP", "INSTL", "DOC", "WHTPR", "HLP" }; for (String key : OTHERS) { taskItems.add(UIRegistry.getResourceString("FeedBackDlg." + key)); } Collections.sort(taskItems); final JComboBox taskCBX = createComboBox(taskItems); final JTextField subjectTF = createTextField(); final JTextField issueTF = createTextField(); final JTextArea commentsTA = createTextArea(15, 60); int y = 1; pb.add(createI18NLabel("FeedBackDlg.INFO"), cc.xyw(1, y, 4)); y += 2; pb.add(createI18NFormLabel("FeedBackDlg.SUB"), cc.xy(1, y)); pb.add(subjectTF, cc.xyw(3, y, 2)); y += 2; pb.add(createI18NFormLabel("FeedBackDlg.COMP"), cc.xy(1, y)); pb.add(taskCBX, cc.xy(3, y)); y += 2; //pb.add(createFormLabel("Question/Issue"), cc.xy(1, y)); //pb.add(issueTF, cc.xyw(3, y, 2)); y += 2; pb.add(createI18NFormLabel("FeedBackDlg.COMM"), cc.xy(1, y)); y += 2; pb.add(createScrollPane(commentsTA, true), cc.xyw(1, y, 4)); y += 2; Taskable currTask = SubPaneMgr.getInstance().getCurrentSubPane().getTask(); taskCBX.setSelectedItem(currTask != null ? currTask : TaskMgr.getDefaultTaskable()); pb.setDefaultDialogBorder(); CustomDialog dlg = new CustomDialog((Frame) null, UIRegistry.getResourceString("FeedBackDlg.TITLE"), true, pb.getPanel()); centerAndShow(dlg); if (!dlg.isCancelled()) { String taskTitle = (String) taskCBX.getSelectedItem(); if (taskTitle != null) { for (Taskable task : TaskMgr.getInstance().getAllTasks()) { if (task.getTitle().equals(taskTitle)) { taskTitle = task.getName(); } } } else { taskTitle = "No Task Name"; } FeedBackSenderItem item = new FeedBackSenderItem(taskTitle, subjectTF.getText(), issueTF.getText(), commentsTA.getText(), "", cls != null ? cls.getName() : ""); return item; } return null; }
From source file:it.imtech.metadata.MetaUtility.java
private String check_and_save_metadata_recursive(Map<Object, Metadata> submetadatas, boolean checkMandatory) { ResourceBundle bundle = ResourceBundle.getBundle(Globals.RESOURCES, Globals.CURRENT_LOCALE, Globals.loader); String error = ""; for (Map.Entry<Object, Metadata> field : submetadatas.entrySet()) { if (!field.getValue().datatype.equals("Node") && field.getValue().editable.equals("Y")) { Component element = null; String midp = Integer.toString(field.getValue().MID_parent); if (midp.equals("11") || midp.equals("13")) element = BookImporter.getInstance().getComponentByName( "MID_" + Integer.toString(field.getValue().MID) + "---" + field.getValue().sequence); else { element = BookImporter.getInstance() .getComponentByName("MID_" + Integer.toString(field.getValue().MID)); }//from w w w . j av a 2 s . c om if (element != null) { if (field.getValue().datatype.equals("CharacterString") || field.getValue().datatype.equals("LangString") || field.getValue().datatype.equals("GPS")) { JTextArea textTemp = (JTextArea) element; field.getValue().value = textTemp.getText(); if (checkMandatory && field.getValue().value.length() < 1 && (field.getValue().mandatory.equals("Y") || field.getValue().MID == 14 || field.getValue().MID == 15)) { error += Utility.getBundleString("error10", bundle) + " " + field.getValue().description.toString() + " " + Utility.getBundleString("error11", bundle) + "!\n"; } } if (field.getValue().datatype.equals("LangString")) { Component combobox = BookImporter.getInstance() .getComponentByName("MID_" + Integer.toString(field.getValue().MID) + "_lang"); JComboBox tmp = (JComboBox) combobox; Map.Entry tmp2 = (Map.Entry) tmp.getSelectedItem(); field.getValue().language = tmp2.getKey().toString(); } else if (field.getValue().datatype.equals("DateTime")) { Component combobox = BookImporter.getInstance() .getComponentByName("MID_" + Integer.toString(field.getValue().MID) + "_check"); JCheckBox beforechrist = (JCheckBox) combobox; JDateChooser datePicker = (JDateChooser) element; Date data = datePicker.getDate(); field.getValue().value = ""; if (data != null) { Format formatter = new SimpleDateFormat("yyyy-MM-dd"); String stDate = formatter.format(data); if (!stDate.equals("")) { if (beforechrist.isSelected()) { stDate = "-" + stDate; } field.getValue().value = stDate; } } } else if (field.getValue().datatype.equals("Language") || field.getValue().datatype.equals("Boolean") || field.getValue().datatype.equals("License") || field.getValue().datatype.equals("Vocabulary")) { Component combobox = null; if (midp.equals("11") || midp.equals("13")) combobox = BookImporter.getInstance().getComponentByName("MID_" + Integer.toString(field.getValue().MID) + "---" + field.getValue().sequence); else combobox = BookImporter.getInstance() .getComponentByName("MID_" + Integer.toString(field.getValue().MID)); JComboBox tmp = (JComboBox) combobox; Map.Entry tmp2 = (Map.Entry) tmp.getSelectedItem(); if (field.getValue().datatype.equals("License") || field.getValue().datatype.equals("Vocabulary")) { ResourceBundle tmpBundle = ResourceBundle.getBundle(Globals.RESOURCES, Globals.CURRENT_LOCALE, Globals.loader); if (checkMandatory && tmp2.getValue().toString() .equals(Utility.getBundleString("comboselect", tmpBundle)) && field.getValue().mandatory.equals("Y")) error += Utility.getBundleString("error10", bundle) + " " + field.getValue().description.toString() + " " + Utility.getBundleString("error11", bundle) + "!\n"; else if (tmp2.getValue().toString() .equals(Utility.getBundleString("comboselect", tmpBundle))) field.getValue().value = ""; else field.getValue().value = tmp2.getValue().toString(); } else field.getValue().value = tmp2.getKey().toString(); } } else { if (midp.equals("11") || midp.equals("13")) { field.getValue().value = ""; } } } error += check_and_save_metadata_recursive(field.getValue().submetadatas, checkMandatory); } return error; }
From source file:search2go.UIFrame.java
private void map(JFormattedTextField bitScore, JFormattedTextField eValue, JComboBox originDB, JTextArea output, boolean fullProcess) { currentProj.setSelectedDBIndex(originDB.getSelectedIndex()); currentProj.setBitScoreThreshold(Integer.parseInt(bitScore.getText())); currentProj.setEthreshold(Integer.parseInt(txtMapE.getText())); mapSequence = new ProcessSequence(currentProj, new ProcessSequenceEnd() { @Override/*from w w w.j a va 2s . c o m*/ public void run() { if (!output.getText().contains( "No valid hits found. Please retry with lower bit score or higher e-value thresholds.")) { if (currentProj.willDoCC()) currentProj.setStage(0, 2); if (currentProj.willDoBP()) currentProj.setStage(1, 2); if (currentProj.willDoBP()) currentProj.setStage(2, 2); output.append("Mapping done! Please proceed to Identification.\n"); if (fullProcess) { output.append("Identifying...\n"); identify(true); } } currentProj.setAvailable(true); prgMapping.setIndeterminate(false); mapButton.restore(); } }); Process mapProcess = new Process(output); Path mapScriptPath = new Path("Processes"); mapScriptPath.append("MapFromBlast.py"); mapProcess.setScriptCommand(mapScriptPath.toEscString()); mapSequence.addProcess(mapProcess); mapProcess.addParameter("dir", currentProj.getPath().toEscString()); if (!bitScore.getText().equals("")) mapProcess.addParameter("bs", bitScore.getText()); if (!eValue.getText().equals("")) mapProcess.addParameter("e", eValue.getText()); mapProcess.addParameter("id", originDB.getSelectedItem().toString().replaceAll(" ", "")); Path blastLoc = new Path(currentProj.getPath()); blastLoc.append("BLAST_Results.xml"); mapProcess.addParameter("o", blastLoc.toString()); mapProcess.addParameter("gdb", currentProj.getTargetDBString()); try { mapSequence.start(); mapButton.setStopTargets(mapSequence); if (!fullProcess) mapButton.activate(); if (currentProj.willDoCC()) currentProj.setStage(0, 1); if (currentProj.willDoBP()) currentProj.setStage(1, 1); if (currentProj.willDoBP()) currentProj.setStage(2, 1); System.out.println(currentProj.getStage()); output.setText("Mapping...\n"); prgMapping.setIndeterminate(true); } catch (IOException ex) { javax.swing.JOptionPane.showMessageDialog(this, "Error running mapping program."); } }