List of usage examples for javafx.fxml FXMLLoader FXMLLoader
public FXMLLoader(Charset charset)
From source file:snpviewer.SnpViewer.java
public void showSavedRegionsTable() { if (savedRegions.size() > 0) { FXMLLoader tableLoader = new FXMLLoader(getClass().getResource("MultiRegionReporter.fxml")); try {//w w w . j a va2s .c om Pane tablePane = (Pane) tableLoader.load(); MultiRegionReporterController multiReg = (MultiRegionReporterController) tableLoader .getController(); Scene tableScene = new Scene(tablePane); Stage tableStage = new Stage(); tableStage.setScene(tableScene); tableScene.getStylesheets() .add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm()); tableStage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png"))); multiReg.displayData(savedRegions); tableStage.setTitle("Saved Regions"); tableStage.initModality(Modality.NONE); tableStage.show(); } catch (Exception ex) { Dialogs.showErrorDialog(null, "Error displaying" + " Saved Regions - see Details for stack trace.", "Saved Regions Display Error!", "SnpViewer", ex); } } else { Dialogs.showInformationDialog(null, "No regions " + "found.", "Saved Regions", "SnpViewer"); } }
From source file:UI.MainStageController.java
/** * Opens new PopUp Window with Image Export options. */// w ww . j av a 2s. c o m @FXML private void exportImages() { try { FXMLLoader loader = new FXMLLoader(getClass().getResource("src/UI/exportImageGUI")); loader.setLocation( new URL("file:" + new File("").getCanonicalPath().concat("/src/UI/exportImageGUI.fxml"))); //Parent root = loader.load(); ExportImageController exportImageController = new ExportImageController(viewPane); //ExportImageController exportImageController = loader.getController(); //exportImageController.setViewPane(viewPane); loader.setController(exportImageController); Parent root = loader.load(); exportImagesStage = new Stage(); exportImagesStage.setTitle("Export Image"); Scene exportImageScene = new Scene(root, 300, 200); exportImagesStage.setScene(exportImageScene); exportImageScene.getStylesheets().add(GlobalConstants.DARKTHEME); exportImagesStage.show(); } catch (Exception e) { e.printStackTrace(); } }
From source file:fr.amap.lidar.amapvox.gui.MainFrameController.java
/** * Initializes the controller class.//from w ww . j av a2 s. com */ @Override public void initialize(URL url, ResourceBundle rb) { this.resourceBundle = rb; viewer3DPanelController.setResourceBundle(rb); initStrings(rb); colorPickerSeries.valueProperty().addListener(new ChangeListener<javafx.scene.paint.Color>() { @Override public void changed(ObservableValue<? extends javafx.scene.paint.Color> observable, javafx.scene.paint.Color oldValue, javafx.scene.paint.Color newValue) { if (listViewVoxelsFilesChart.getSelectionModel().getSelectedItems().size() == 1) { listViewVoxelsFilesChart.getSelectionModel().getSelectedItem().getSeriesParameters() .setColor(new Color((float) newValue.getRed(), (float) newValue.getGreen(), (float) newValue.getBlue(), 1.0f)); } } }); comboboxScript.getItems().setAll("Daniel script"); vboxWeighting.disableProperty().bind(checkboxEnableWeighting.selectedProperty().not()); checkboxEnableWeighting.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (newValue && textAreaWeighting.getText().isEmpty()) { int selectedVoxTab = tabPaneVoxelisation.getSelectionModel().getSelectedIndex(); if (selectedVoxTab == 0) { //ALS fillWeightingData(EchoesWeightParams.DEFAULT_ALS_WEIGHTING); } else if (selectedVoxTab == 1) { //TLS fillWeightingData(EchoesWeightParams.DEFAULT_TLS_WEIGHTING); } } } }); /*comboboxTransMode.getItems().setAll(1, 2, 3); comboboxTransMode.getSelectionModel().selectFirst(); comboboxPathLengthMode.getItems().setAll("A", "B"); comboboxPathLengthMode.getSelectionModel().selectFirst();*/ helpButtonNaNsCorrection.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { helpButtonNaNsCorrectionController.showHelpDialog(resourceBundle.getString("help_NaNs_correction")); } }); helpButtonAutoBBox.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { helpButtonAutoBBoxController.showHelpDialog(resourceBundle.getString("help_bbox")); } }); helpButtonHemiPhoto.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { helpButtonHemiPhotoController.showHelpDialog(resourceBundle.getString("help_hemiphoto")); } }); buttonHelpEmptyShotsFilter.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { buttonHelpEmptyShotsFilterController .showHelpDialog(resourceBundle.getString("help_empty_shots_filter")); } }); /*work around, the divider positions values are defined in the fxml, but when the window is initialized the values are lost*/ Platform.runLater(new Runnable() { @Override public void run() { splitPaneMain.setDividerPositions(0.75f); splitPaneVoxelization.setDividerPositions(0.45f); } }); initValidationSupport(); initPostProcessTab(); listViewTransmittanceMapSensorPositions.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); listViewTaskList.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); MenuItem menuItemPadValue1m = new MenuItem("1m voxel size"); addMenuItemPadValue(menuItemPadValue1m, 3.536958f); MenuItem menuItemPadValue2m = new MenuItem("2m voxel size"); addMenuItemPadValue(menuItemPadValue2m, 2.262798f); MenuItem menuItemPadValue3m = new MenuItem("3m voxel size"); addMenuItemPadValue(menuItemPadValue3m, 1.749859f); MenuItem menuItemPadValue4m = new MenuItem("4m voxel size"); addMenuItemPadValue(menuItemPadValue4m, 1.3882959f); MenuItem menuItemPadValue5m = new MenuItem("5m voxel size"); addMenuItemPadValue(menuItemPadValue5m, 1.0848f); menuButtonAdvisablePADMaxValues.getItems().addAll(menuItemPadValue1m, menuItemPadValue2m, menuItemPadValue3m, menuItemPadValue4m, menuItemPadValue5m); fileChooserSaveCanopyAnalyserOutputFile = new FileChooserContext(); fileChooserSaveCanopyAnalyserCfgFile = new FileChooserContext(); fileChooserSaveTransmittanceSimCfgFile = new FileChooserContext(); fileChooserOpenCanopyAnalyserInputFile = new FileChooserContext(); listViewCanopyAnalyzerSensorPositions.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); ContextMenu contextMenuProductsList = new ContextMenu(); MenuItem openImageItem = new MenuItem(RS_STR_OPEN_IMAGE); openImageItem.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedFile = listViewProductsFiles.getSelectionModel().getSelectedItem(); showImage(selectedFile); } }); Menu menuEdit = new Menu(RS_STR_EDIT); MenuItem menuItemEditVoxels = new MenuItem("Remove voxels (delete key)"); MenuItem menuItemFitToContent = new MenuItem("Fit to content"); MenuItem menuItemCrop = new MenuItem("Crop"); menuEdit.getItems().setAll(menuItemEditVoxels, menuItemFitToContent, menuItemCrop); menuItemFitToContent.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { fitVoxelSpaceToContent(selectedItem); } } }); menuItemEditVoxels.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { editVoxelSpace(selectedItem); } } }); menuItemCrop.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { try { voxelSpaceCroppingFrameController.setVoxelFile(selectedItem); voxelSpaceCroppingFrame.show(); } catch (Exception ex) { showErrorDialog(ex); } } } }); Menu menuExport = new Menu(RS_STR_EXPORT); MenuItem menuItemExportDartMaket = new MenuItem("Dart (maket.txt)"); MenuItem menuItemExportDartPlots = new MenuItem("Dart (plots.xml)"); MenuItem menuItemExportMeshObj = new MenuItem("Mesh (*.obj)"); menuItemExportDartMaket.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { exportDartMaket(selectedItem); } } }); menuItemExportDartPlots.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { exportDartPlots(selectedItem); } } }); menuItemExportMeshObj.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { exportMeshObj(selectedItem); } } }); menuExport.getItems().setAll(menuItemExportDartMaket, menuItemExportDartPlots, menuItemExportMeshObj); MenuItem menuItemInfo = new MenuItem(RS_STR_INFO); menuItemInfo.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { Alert alert = new Alert(AlertType.INFORMATION); File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { VoxelFileReader reader; try { reader = new VoxelFileReader(selectedItem); VoxelSpaceInfos voxelSpaceInfos = reader.getVoxelSpaceInfos(); alert.setTitle("Information"); alert.setHeaderText("Voxel space informations"); alert.setContentText(voxelSpaceInfos.toString()); alert.show(); } catch (Exception ex) { showErrorDialog(ex); } } } }); final MenuItem menuItemOpenContainingFolder = new MenuItem(RS_STR_OPEN_CONTAINING_FOLDER); menuItemOpenContainingFolder.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { final File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { if (Desktop.isDesktopSupported()) { new Thread(() -> { try { Desktop.getDesktop().open(selectedItem.getParentFile()); } catch (IOException ex) { logger.error("Cannot open directory " + selectedItem); } }).start(); } } } }); listViewProductsFiles.setOnContextMenuRequested(new EventHandler<ContextMenuEvent>() { @Override public void handle(ContextMenuEvent event) { if (listViewProductsFiles.getSelectionModel().getSelectedIndices().size() == 1) { File selectedFile = listViewProductsFiles.getSelectionModel().getSelectedItem(); String extension = FileManager.getExtension(selectedFile); switch (extension) { case ".png": case ".bmp": case ".jpg": contextMenuProductsList.getItems().setAll(openImageItem, menuItemOpenContainingFolder); contextMenuProductsList.show(listViewProductsFiles, event.getScreenX(), event.getScreenY()); break; case ".vox": default: if (VoxelFileReader.isFileAVoxelFile(selectedFile)) { contextMenuProductsList.getItems().setAll(menuItemInfo, menuItemOpenContainingFolder, menuEdit, menuExport); contextMenuProductsList.show(listViewProductsFiles, event.getScreenX(), event.getScreenY()); } } } } }); ContextMenu contextMenuLidarScanEdit = new ContextMenu(); MenuItem editItem = new MenuItem("Edit"); editItem.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { filterFrameController.setFilters("Reflectance", "Deviation", "Amplitude"); filterFrame.show(); filterFrame.setOnHidden(new EventHandler<WindowEvent>() { @Override public void handle(WindowEvent event) { if (filterFrameController.getFilter() != null) { ObservableList<LidarScan> items = listViewHemiPhotoScans.getSelectionModel() .getSelectedItems(); for (LidarScan scan : items) { scan.filters.add(filterFrameController.getFilter()); } } } }); } }); contextMenuLidarScanEdit.getItems().add(editItem); listViewHemiPhotoScans.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); listViewHemiPhotoScans.setOnContextMenuRequested(new EventHandler<ContextMenuEvent>() { @Override public void handle(ContextMenuEvent event) { contextMenuLidarScanEdit.show(listViewHemiPhotoScans, event.getScreenX(), event.getScreenY()); } }); /**LAD tab initialization**/ comboboxLADChoice.getItems().addAll(LeafAngleDistribution.Type.UNIFORM, LeafAngleDistribution.Type.SPHERIC, LeafAngleDistribution.Type.ERECTOPHILE, LeafAngleDistribution.Type.PLANOPHILE, LeafAngleDistribution.Type.EXTREMOPHILE, LeafAngleDistribution.Type.PLAGIOPHILE, LeafAngleDistribution.Type.HORIZONTAL, LeafAngleDistribution.Type.VERTICAL, LeafAngleDistribution.Type.ELLIPSOIDAL, LeafAngleDistribution.Type.ELLIPTICAL, LeafAngleDistribution.Type.TWO_PARAMETER_BETA); comboboxLADChoice.getSelectionModel().select(LeafAngleDistribution.Type.SPHERIC); comboboxLADChoice.getSelectionModel().selectedItemProperty() .addListener(new ChangeListener<LeafAngleDistribution.Type>() { @Override public void changed(ObservableValue<? extends LeafAngleDistribution.Type> observable, LeafAngleDistribution.Type oldValue, LeafAngleDistribution.Type newValue) { if (newValue == LeafAngleDistribution.Type.TWO_PARAMETER_BETA || newValue == LeafAngleDistribution.Type.ELLIPSOIDAL) { hboxTwoBetaParameters.setVisible(true); if (newValue == LeafAngleDistribution.Type.ELLIPSOIDAL) { labelLADBeta.setVisible(false); } else { labelLADBeta.setVisible(true); } } else { hboxTwoBetaParameters.setVisible(false); } } }); ToggleGroup ladTypeGroup = new ToggleGroup(); radiobuttonLADHomogeneous.setToggleGroup(ladTypeGroup); radiobuttonLADLocalEstimation.setToggleGroup(ladTypeGroup); /**CHART panel initialization**/ ToggleGroup profileChartType = new ToggleGroup(); radiobuttonPreDefinedProfile.setToggleGroup(profileChartType); radiobuttonFromVariableProfile.setToggleGroup(profileChartType); ToggleGroup profileChartRelativeHeightType = new ToggleGroup(); radiobuttonHeightFromAboveGround.setToggleGroup(profileChartRelativeHeightType); radiobuttonHeightFromBelowCanopy.setToggleGroup(profileChartRelativeHeightType); comboboxFromVariableProfile.disableProperty().bind(radiobuttonPreDefinedProfile.selectedProperty()); comboboxPreDefinedProfile.disableProperty().bind(radiobuttonFromVariableProfile.selectedProperty()); hboxMaxPADVegetationProfile.visibleProperty().bind(radiobuttonPreDefinedProfile.selectedProperty()); listViewVoxelsFilesChart.getSelectionModel().selectedIndexProperty() .addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { if (listViewVoxelsFilesChart.getSelectionModel().getSelectedItems().size() > 1) { colorPickerSeries.setDisable(true); } else if (listViewVoxelsFilesChart.getSelectionModel().getSelectedItems().size() == 1) { VoxelFileChart selectedItem = listViewVoxelsFilesChart.getSelectionModel() .getSelectedItem(); Color selectedItemColor = selectedItem.getSeriesParameters().getColor(); colorPickerSeries.setDisable(false); colorPickerSeries.setValue(new javafx.scene.paint.Color( selectedItemColor.getRed() / 255.0, selectedItemColor.getGreen() / 255.0, selectedItemColor.getBlue() / 255.0, 1.0)); if (newValue.intValue() >= 0) { textfieldLabelVoxelFileChart.setText( listViewVoxelsFilesChart.getItems().get(newValue.intValue()).label); } } } }); textfieldLabelVoxelFileChart.textProperty().addListener(new ChangeListener<String>() { @Override public void changed(ObservableValue<? extends String> observable, String oldValue, String newValue) { if (listViewVoxelsFilesChart.getSelectionModel().getSelectedIndex() >= 0) { listViewVoxelsFilesChart.getSelectionModel().getSelectedItem().label = newValue; } } }); listViewVoxelsFilesChart.getItems().addListener(new ListChangeListener<VoxelFileChart>() { @Override public void onChanged(ListChangeListener.Change<? extends VoxelFileChart> c) { while (c.next()) { } if (c.wasAdded() && c.getAddedSize() == c.getList().size()) { try { VoxelFileReader reader = new VoxelFileReader(c.getList().get(0).file); String[] columnNames = reader.getVoxelSpaceInfos().getColumnNames(); comboboxFromVariableProfile.getItems().clear(); comboboxFromVariableProfile.getItems().addAll(columnNames); comboboxFromVariableProfile.getSelectionModel().selectFirst(); } catch (Exception ex) { logger.error("Cannot read voxel file", ex); } } } }); anchorpaneQuadrats.disableProperty().bind(checkboxMakeQuadrats.selectedProperty().not()); comboboxSelectAxisForQuadrats.getItems().addAll("X", "Y", "Z"); comboboxSelectAxisForQuadrats.getSelectionModel().select(1); comboboxPreDefinedProfile.getItems().addAll("Vegetation (PAD)"); comboboxPreDefinedProfile.getSelectionModel().selectFirst(); radiobuttonSplitCountForQuadrats.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { textFieldSplitCountForQuadrats.setDisable(!newValue); textFieldLengthForQuadrats.setDisable(newValue); } }); ToggleGroup chartMakeQuadratsSplitType = new ToggleGroup(); radiobuttonLengthForQuadrats.setToggleGroup(chartMakeQuadratsSplitType); radiobuttonSplitCountForQuadrats.setToggleGroup(chartMakeQuadratsSplitType); /**Virtual measures panel initialization**/ comboboxHemiPhotoBitmapOutputMode.getItems().addAll("Pixel", "Color"); comboboxHemiPhotoBitmapOutputMode.getSelectionModel().selectFirst(); ToggleGroup virtualMeasuresChoiceGroup = new ToggleGroup(); toggleButtonLAI2000Choice.setToggleGroup(virtualMeasuresChoiceGroup); toggleButtonLAI2200Choice.setToggleGroup(virtualMeasuresChoiceGroup); comboboxChooseCanopyAnalyzerSampling.getItems().setAll(500, 4000, 10000); comboboxChooseCanopyAnalyzerSampling.getSelectionModel().selectFirst(); initEchoFiltering(); data = FXCollections.observableArrayList(); tableViewSimulationPeriods.setItems(data); tableViewSimulationPeriods.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); comboboxChooseDirectionsNumber.getItems().addAll(1, 6, 16, 46, 136, 406); comboboxChooseDirectionsNumber.getSelectionModel().select(4); ToggleGroup scannerPositionsMode = new ToggleGroup(); /*radiobuttonScannerPosSquaredArea.setToggleGroup(scannerPositionsMode); radiobuttonScannerPosFile.setToggleGroup(scannerPositionsMode);*/ tableColumnPeriod.setCellValueFactory( new Callback<TableColumn.CellDataFeatures<SimulationPeriod, String>, ObservableValue<String>>() { @Override public ObservableValue<String> call( TableColumn.CellDataFeatures<SimulationPeriod, String> param) { return new SimpleStringProperty(param.getValue().getPeriod().toString()); } }); tableColumnClearness.setCellValueFactory( new Callback<TableColumn.CellDataFeatures<SimulationPeriod, String>, ObservableValue<String>>() { @Override public ObservableValue<String> call( TableColumn.CellDataFeatures<SimulationPeriod, String> param) { return new SimpleStringProperty(String.valueOf(param.getValue().getClearnessCoefficient())); } }); checkboxMultiFiles.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { anchorpaneBoundingBoxParameters.setDisable(newValue); } }); hboxGenerateBitmapFiles.disableProperty().bind(checkboxGenerateBitmapFile.selectedProperty().not()); hboxGenerateTextFile.disableProperty().bind(checkboxGenerateTextFile.selectedProperty().not()); fileChooserOpenConfiguration = new FileChooser(); fileChooserOpenConfiguration.setTitle("Choose configuration file"); fileChooserSaveConfiguration = new FileChooserContext("cfg.xml"); fileChooserSaveConfiguration.fc.setTitle("Choose output file"); fileChooserOpenInputFileALS = new FileChooser(); fileChooserOpenInputFileALS.setTitle("Open input file"); fileChooserOpenInputFileALS.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Shot files", "*.sht"), new ExtensionFilter("Text Files", "*.txt"), new ExtensionFilter("Las Files", "*.las", "*.laz")); fileChooserOpenTrajectoryFileALS = new FileChooser(); fileChooserOpenTrajectoryFileALS.setTitle("Open trajectory file"); fileChooserOpenTrajectoryFileALS.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenOutputFileALS = new FileChooser(); fileChooserOpenOutputFileALS.setTitle("Choose output file"); fileChooserOpenInputFileTLS = new FileChooserContext(); fileChooserOpenInputFileTLS.fc.setTitle("Open input file"); fileChooserOpenInputFileTLS.fc.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt"), new ExtensionFilter("Rxp Files", "*.rxp"), new ExtensionFilter("Project Rsp Files", "*.rsp")); directoryChooserOpenOutputPathTLS = new DirectoryChooser(); directoryChooserOpenOutputPathTLS.setTitle("Choose output path"); directoryChooserOpenOutputPathALS = new DirectoryChooser(); directoryChooserOpenOutputPathALS.setTitle("Choose output path"); fileChooserSaveOutputFileTLS = new FileChooser(); fileChooserSaveOutputFileTLS.setTitle("Save voxel file"); fileChooserSaveTransmittanceTextFile = new FileChooser(); fileChooserSaveTransmittanceTextFile.setTitle("Save text file"); directoryChooserSaveTransmittanceBitmapFile = new DirectoryChooser(); directoryChooserSaveTransmittanceBitmapFile.setTitle("Choose output directory"); fileChooserSaveHemiPhotoOutputBitmapFile = new FileChooserContext("*.png"); fileChooserSaveHemiPhotoOutputBitmapFile.fc.setTitle("Save bitmap file"); directoryChooserSaveHemiPhotoOutputBitmapFile = new DirectoryChooser(); directoryChooserSaveHemiPhotoOutputBitmapFile.setTitle("Choose bitmap files output directory"); directoryChooserSaveHemiPhotoOutputTextFile = new DirectoryChooser(); directoryChooserSaveHemiPhotoOutputTextFile.setTitle("Choose text files output directory"); fileChooserSaveHemiPhotoOutputTextFile = new FileChooser(); fileChooserSaveHemiPhotoOutputTextFile.setTitle("Save text file"); fileChooserOpenVoxelFile = new FileChooser(); fileChooserOpenVoxelFile.setTitle("Open voxel file"); fileChooserOpenVoxelFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Voxel Files", "*.vox")); fileChooserOpenPopMatrixFile = new FileChooser(); fileChooserOpenPopMatrixFile.setTitle("Choose matrix file"); fileChooserOpenPopMatrixFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenSopMatrixFile = new FileChooser(); fileChooserOpenSopMatrixFile.setTitle("Choose matrix file"); fileChooserOpenSopMatrixFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenVopMatrixFile = new FileChooser(); fileChooserOpenVopMatrixFile.setTitle("Choose matrix file"); fileChooserOpenVopMatrixFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenPonderationFile = new FileChooser(); fileChooserOpenPonderationFile.setTitle("Choose ponderation file"); fileChooserOpenPonderationFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenDTMFile = new FileChooser(); fileChooserOpenDTMFile.setTitle("Choose DTM file"); fileChooserOpenDTMFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("DTM Files", "*.asc")); fileChooserOpenPointCloudFile = new FileChooser(); fileChooserOpenPointCloudFile.setTitle("Choose point cloud file"); fileChooserOpenPointCloudFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("TXT Files", "*.txt")); fileChooserOpenMultiResVoxelFile = new FileChooser(); fileChooserOpenMultiResVoxelFile.setTitle("Choose voxel file"); fileChooserOpenMultiResVoxelFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Voxel Files", "*.vox")); fileChooserOpenOutputFileMultiRes = new FileChooser(); fileChooserOpenOutputFileMultiRes.setTitle("Save voxel file"); fileChooserAddTask = new FileChooser(); fileChooserAddTask.setTitle("Choose parameter file"); fileChooserAddTask.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("XML Files", "*.xml")); fileChooserSaveDartFile = new FileChooser(); fileChooserSaveDartFile.setTitle("Save dart file (.maket)"); fileChooserSaveDartFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Maket File", "*.maket")); fileChooserOpenOutputFileMerging = new FileChooser(); fileChooserOpenOutputFileMerging.setTitle("Choose voxel file"); fileChooserOpenOutputFileMerging.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Voxel Files", "*.vox")); fileChooserOpenScriptFile = new FileChooser(); fileChooserOpenScriptFile.setTitle("Choose script file"); fileChooserSaveGroundEnergyOutputFile = new FileChooser(); fileChooserSaveGroundEnergyOutputFile.setTitle("Save ground energy file"); fileChooserOpenPointsPositionFile = new FileChooser(); fileChooserOpenPointsPositionFile.setTitle("Choose points file"); fileChooserOpenPointsPositionFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("TXT Files", "*.txt")); try { viewCapsSetupFrame = new Stage(); FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/ViewCapsSetupFrame.fxml")); Parent root = loader.load(); viewCapsSetupFrameController = loader.getController(); viewCapsSetupFrame.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/FilteringPaneComponent.fxml")); anchorPaneEchoFilteringRxp = loader.load(); filteringPaneController = loader.getController(); filteringPaneController.setFiltersNames("Reflectance", "Amplitude", "Deviation"); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { positionImporterFrame = new Stage(); FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/PositionImporterFrame.fxml")); Parent root = loader.load(); positionImporterFrameController = loader.getController(); positionImporterFrame.setScene(new Scene(root)); positionImporterFrameController.setStage(positionImporterFrame); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { voxelSpaceCroppingFrame = new Stage(); FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/VoxelSpaceCroppingFrame.fxml")); Parent root = loader.load(); voxelSpaceCroppingFrameController = loader.getController(); voxelSpaceCroppingFrame.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { attributsImporterFrame = new Stage(); FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/AttributsImporterFrame.fxml")); Parent root = loader.load(); attributsImporterFrameController = loader.getController(); attributsImporterFrame.setScene(new Scene(root)); attributsImporterFrameController.setStage(attributsImporterFrame); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { textFileParserFrameController = TextFileParserFrameController.getInstance(); } catch (Exception ex) { logger.error("Cannot load fxml file", ex); } try { transformationFrameController = TransformationFrameController.getInstance(); transformationFrame = transformationFrameController.getStage(); } catch (Exception ex) { logger.error("Cannot load fxml file", ex); } updaterFrame = new Stage(); try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/update/UpdaterFrame.fxml")); Parent root = loader.load(); updaterFrameController = loader.getController(); updaterFrame.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } riscanProjectExtractor = new RiscanProjectExtractor(); ptxProjectExtractor = new PTXProjectExtractor(); ptgProjectExtractor = new PTGProjectExtractor(); dateChooserFrame = new Stage(); try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/DateChooserFrame.fxml")); Parent root = loader.load(); dateChooserFrameController = loader.getController(); dateChooserFrame.setScene(new Scene(root)); dateChooserFrameController.setStage(dateChooserFrame); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } comboboxModeALS.getItems().addAll(RS_STR_INPUT_TYPE_LAS, RS_STR_INPUT_TYPE_LAZ, /*RS_STR_INPUT_TYPE_XYZ, */RS_STR_INPUT_TYPE_SHOTS); comboboxModeALS.getSelectionModel().selectedItemProperty().addListener(new ChangeListener<String>() { @Override public void changed(ObservableValue<? extends String> observable, String oldValue, String newValue) { if (newValue.equals(RS_STR_INPUT_TYPE_SHOTS)) { alsVoxValidationSupport.registerValidator(textFieldTrajectoryFileALS, false, Validators.unregisterValidator); } else { alsVoxValidationSupport.registerValidator(textFieldTrajectoryFileALS, false, Validators.fileExistValidator); } } }); comboboxModeTLS.getItems().setAll("Rxp scan", "Rsp project", "PTX", "PTG"/*, RS_STR_INPUT_TYPE_XYZ, RS_STR_INPUT_TYPE_SHOTS*/); comboboxGroundEnergyOutputFormat.getItems().setAll("txt", "png"); comboboxLaserSpecification.getItems().addAll(LaserSpecification.getPresets()); comboboxLaserSpecification.getSelectionModel().selectedItemProperty() .addListener(new ChangeListener<LaserSpecification>() { @Override public void changed(ObservableValue<? extends LaserSpecification> observable, LaserSpecification oldValue, LaserSpecification newValue) { DecimalFormatSymbols symb = new DecimalFormatSymbols(); symb.setDecimalSeparator('.'); DecimalFormat formatter = new DecimalFormat("#####.######", symb); textFieldBeamDiameterAtExit.setText(formatter.format(newValue.getBeamDiameterAtExit())); textFieldBeamDivergence.setText(formatter.format(newValue.getBeamDivergence())); } }); comboboxLaserSpecification.getSelectionModel().select(LaserSpecification.LMS_Q560); comboboxLaserSpecification.disableProperty().bind(checkboxCustomLaserSpecification.selectedProperty()); textFieldBeamDiameterAtExit.disableProperty() .bind(checkboxCustomLaserSpecification.selectedProperty().not()); textFieldBeamDivergence.disableProperty().bind(checkboxCustomLaserSpecification.selectedProperty().not()); listViewProductsFiles.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); listViewProductsFiles.getSelectionModel().selectedIndexProperty().addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { int size = listViewProductsFiles.getSelectionModel().getSelectedIndices().size(); if (size == 1) { viewer3DPanelController .updateCurrentVoxelFile(listViewProductsFiles.getSelectionModel().getSelectedItem()); } } }); listViewTaskList.getSelectionModel().selectedIndexProperty().addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { int size = listViewTaskList.getSelectionModel().getSelectedIndices().size(); if (size == 1) { buttonLoadSelectedTask.setDisable(false); } else { buttonLoadSelectedTask.setDisable(true); } buttonExecute.setDisable(size == 0); } }); resetMatrices(); calculateMatrixFrame = new Stage(); try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/CalculateMatrixFrame.fxml")); Parent root = loader.load(); calculateMatrixFrameController = loader.getController(); calculateMatrixFrameController.setStage(calculateMatrixFrame); Scene scene = new Scene(root); calculateMatrixFrame.setScene(scene); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } filterFrame = new Stage(); try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/FilterFrame.fxml")); Parent root = loader.load(); filterFrameController = loader.getController(); filterFrameController.setStage(filterFrame); filterFrameController.setFilters("Angle"); filterFrame.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/export/ObjExporterDialog.fxml")); Parent root = loader.load(); objExporterController = loader.getController(); Stage s = new Stage(); objExporterController.setStage(s); s.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } textFieldResolution.textProperty().addListener(new ChangeListener<String>() { @Override public void changed(ObservableValue<? extends String> observable, String oldValue, String newValue) { voxelSpacePanelVoxelizationController.setResolution(Float.valueOf(newValue)); } }); textFieldResolution.textProperty().addListener(voxelSpacePanelVoxelizationController.getChangeListener()); checkboxUseDTMFilter.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (checkboxUseDTMFilter.isSelected()) { buttonOpenDTMFile.setDisable(false); textfieldDTMPath.setDisable(false); textfieldDTMValue.setDisable(false); checkboxApplyVOPMatrix.setDisable(false); labelDTMValue.setDisable(false); labelDTMPath.setDisable(false); } else { buttonOpenDTMFile.setDisable(true); textfieldDTMPath.setDisable(true); textfieldDTMValue.setDisable(true); checkboxApplyVOPMatrix.setDisable(true); labelDTMValue.setDisable(true); labelDTMPath.setDisable(true); } } }); checkboxUseVopMatrix.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { buttonSetVOPMatrix.setDisable(!newValue); } }); checkboxUsePopMatrix.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (newValue) { checkBoxUseDefaultPopMatrix.setDisable(false); buttonOpenPopMatrixFile.setDisable(false); } else { checkBoxUseDefaultPopMatrix.setDisable(true); buttonOpenPopMatrixFile.setDisable(true); } } }); checkboxUseSopMatrix.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (newValue) { checkBoxUseDefaultSopMatrix.setDisable(false); buttonOpenSopMatrixFile.setDisable(false); } else { checkBoxUseDefaultSopMatrix.setDisable(true); buttonOpenSopMatrixFile.setDisable(true); } } }); checkboxCalculateGroundEnergy.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (newValue) { anchorPaneGroundEnergyParameters.setDisable(false); } else { anchorPaneGroundEnergyParameters.setDisable(true); } } }); listviewRxpScans.getSelectionModel().selectedItemProperty().addListener(new ChangeListener<LidarScan>() { @Override public void changed(ObservableValue<? extends LidarScan> observable, LidarScan oldValue, LidarScan newValue) { if (newValue != null) { sopMatrix = newValue.matrix; updateResultMatrix(); } } }); comboboxModeTLS.getSelectionModel().selectedIndexProperty().addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { switch (newValue.intValue()) { case 1: case 2: case 3: listviewRxpScans.setDisable(false); checkboxMergeAfter.setDisable(false); textFieldMergedFileName.setDisable(false); disableSopMatrixChoice(false); labelTLSOutputPath.setText("Output path"); break; default: listviewRxpScans.setDisable(true); checkboxMergeAfter.setDisable(true); textFieldMergedFileName.setDisable(true); //disableSopMatrixChoice(true); labelTLSOutputPath.setText("Output file"); } if (newValue.intValue() == 0 || newValue.intValue() == 1) { checkboxEmptyShotsFilter.setDisable(false); } else { checkboxEmptyShotsFilter.setDisable(true); } } }); tabPaneVoxelisation.getSelectionModel().selectedIndexProperty().addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { switch (newValue.intValue()) { case 1: disableSopMatrixChoice(false); disablePopMatrixChoice(false); checkboxEmptyShotsFilter.setDisable(false); break; default: disableSopMatrixChoice(true); disablePopMatrixChoice(true); checkboxEmptyShotsFilter.setDisable(true); } switch (newValue.intValue()) { case 0: checkboxCalculateGroundEnergy.setDisable(false); if (checkboxCalculateGroundEnergy.isSelected()) { anchorPaneGroundEnergyParameters.setDisable(true); checkboxCalculateGroundEnergy.setDisable(false); } anchorPaneEchoFiltering.getChildren().set(0, anchorPaneEchoFilteringClassifications); //anchorPaneEchoFilteringClassifications.setVisible(true); anchorpaneBoundingBoxParameters.setDisable(checkboxMultiFiles.isSelected()); hboxAutomaticBBox.setDisable(false); break; default: anchorPaneGroundEnergyParameters.setDisable(true); checkboxCalculateGroundEnergy.setDisable(true); anchorPaneEchoFiltering.getChildren().set(0, anchorPaneEchoFilteringRxp); //anchorPaneEchoFilteringClassifications.setVisible(false); anchorpaneBoundingBoxParameters.setDisable(false); hboxAutomaticBBox.setDisable(true); } } }); int availableCores = Runtime.getRuntime().availableProcessors(); sliderRSPCoresToUse.setMin(1); sliderRSPCoresToUse.setMax(availableCores); sliderRSPCoresToUse.setValue(availableCores); textFieldInputFileALS.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldTrajectoryFileALS.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldOutputFileALS.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldInputFileTLS.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldOutputFileMerging.setOnDragOver(DragAndDropHelper.dragOverEvent); textfieldDTMPath.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldOutputFileGroundEnergy.setOnDragOver(DragAndDropHelper.dragOverEvent); listViewTaskList.setOnDragOver(DragAndDropHelper.dragOverEvent); listViewProductsFiles.setOnDragOver(DragAndDropHelper.dragOverEvent); textfieldVoxelFilePathTransmittance.setOnDragOver(DragAndDropHelper.dragOverEvent); textfieldOutputTextFilePath.setOnDragOver(DragAndDropHelper.dragOverEvent); textfieldOutputBitmapFilePath.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldInputFileALS.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles() && db.getFiles().size() == 1) { success = true; for (File file : db.getFiles()) { if (file != null) { textFieldInputFileALS.setText(file.getAbsolutePath()); selectALSInputMode(file); } } } event.setDropCompleted(success); event.consume(); } }); textFieldTrajectoryFileALS.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles() && db.getFiles().size() == 1) { success = true; for (File file : db.getFiles()) { if (file != null) { onTrajectoryFileChoosed(file); } } } event.setDropCompleted(success); event.consume(); } }); textFieldInputFileTLS.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles() && db.getFiles().size() == 1) { success = true; for (File file : db.getFiles()) { if (file != null) { onInputFileTLSChoosed(file); } } } event.setDropCompleted(success); event.consume(); } }); setDragDroppedSingleFileEvent(textFieldOutputFileALS); setDragDroppedSingleFileEvent(textFieldOutputFileMerging); setDragDroppedSingleFileEvent(textfieldDTMPath); setDragDroppedSingleFileEvent(textFieldOutputFileGroundEnergy); setDragDroppedSingleFileEvent(textfieldVoxelFilePathTransmittance); setDragDroppedSingleFileEvent(textfieldOutputTextFilePath); setDragDroppedSingleFileEvent(textfieldOutputBitmapFilePath); listViewTaskList.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles()) { success = true; for (File file : db.getFiles()) { addFileToTaskList(file); } } event.setDropCompleted(success); event.consume(); } }); listViewProductsFiles.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles()) { success = true; for (File file : db.getFiles()) { addFileToProductsList(file); } } event.setDropCompleted(success); event.consume(); } }); listViewProductsFiles.setOnDragDetected(new EventHandler<MouseEvent>() { @Override public void handle(MouseEvent event) { Dragboard db = listViewProductsFiles.startDragAndDrop(TransferMode.COPY); ClipboardContent content = new ClipboardContent(); content.putFiles(listViewProductsFiles.getSelectionModel().getSelectedItems()); db.setContent(content); event.consume(); } }); addPointcloudFilterComponent(); checkboxUsePointcloudFilter.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { hBoxPointCloudFiltering.setDisable(!newValue); ObservableList<Node> list = vBoxPointCloudFiltering.getChildren(); for (Node n : list) { if (n instanceof PointCloudFilterPaneComponent) { PointCloudFilterPaneComponent panel = (PointCloudFilterPaneComponent) n; panel.disableContent(!newValue); } } buttonAddPointcloudFilter.setDisable(!newValue); } }); //displayGThetaAllDistributions(); }
From source file:snpviewer.SnpViewer.java
public void removeSamples(ActionEvent event) { FXMLLoader loader = new FXMLLoader(getClass().getResource("RemoveSamplesInterface.fxml")); try {/*from w w w . jav a2 s .co m*/ Pane pane = (Pane) loader.load(); RemoveSamplesInterfaceController removeController = (RemoveSamplesInterfaceController) loader .getController(); Scene scene = new Scene(pane); Stage stage = new Stage(); stage.setScene(scene); scene.getStylesheets().add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm()); stage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png"))); stage.setTitle("Remove Samples"); removeController.setSamples(affObserve, unObserve); stage.initModality(Modality.APPLICATION_MODAL); stage.showAndWait(); List<Integer> indicesToRemove = removeController.getSamplesToRemove(); //System.out.println(indicesToRemove.toString()); if (indicesToRemove.isEmpty()) { return; } ArrayList<Integer> affsToRemove = new ArrayList<>(); ArrayList<Integer> unsToRemove = new ArrayList<>(); for (Integer r : indicesToRemove) { if (r < affObserve.size()) {//index corresponds to affFiles affsToRemove.add(r); } else {//index corresponds to unFiles r -= affObserve.size(); unsToRemove.add(r); } } ArrayList<File> dirsToDelete = new ArrayList<>(); if (!affsToRemove.isEmpty()) { Collections.sort(affsToRemove, Collections.reverseOrder()); for (int i : affsToRemove) { dirsToDelete.add(affObserve.get(i).getOutputDirectory()); affObserve.remove(i); } } if (!unsToRemove.isEmpty()) { Collections.sort(unsToRemove, Collections.reverseOrder()); for (int i : unsToRemove) { dirsToDelete.add(unObserve.get(i).getOutputDirectory()); unObserve.remove(i); } } if (affObserve.isEmpty() && unObserve.isEmpty()) { resetView(); } else { refreshView(null, false); } saveProject(); for (File dir : dirsToDelete) { FileUtils.deleteDirectory(dir); } } catch (Exception ex) { Dialogs.showErrorDialog(null, "Sample removal failed - please see " + "details for stack trace and report this error.", "Remove Samples Failed!", "SnpViewer", ex); } }
From source file:snpviewer.SnpViewer.java
public void displayFlankingSnpIDs(final String chrom, final double start, final double end) { final Task<List<String>> displayTask = new Task<List<String>>() { @Override// www . jav a2s.c o m protected List<String> call() { updateProgress(-1, -1); updateTitle("Finding flanking SNPs"); updateMessage("Searching for nearest SNP in all files..."); //work out coordinates based on chromosome and pane sizes /* read SnpFiles to find closest SNPs - use binary search * to find nearby SNP and refine to closest */ List<SnpFile.SnpLine> startAndEndSnps = searchCoordinate(chrom, (int) start, (int) end); if (startAndEndSnps == null) { //DISPLAY ERROR HERE? return null; } String coordResult = "chr" + chrom + ":" + nf.format(startAndEndSnps.get(0).getPosition()) + "-" + nf.format(startAndEndSnps.get(1).getPosition()); String idResult = startAndEndSnps.get(0).getId() + ";" + startAndEndSnps.get(1).getId(); List<String> result = new ArrayList(); result.add(coordResult); result.add(idResult); return result; } }; setProgressMode(true); progressBar.progressProperty().bind(displayTask.progressProperty()); progressMessage.textProperty().unbind(); progressMessage.textProperty().bind(displayTask.messageProperty()); progressTitle.textProperty().unbind(); progressTitle.textProperty().bind(displayTask.titleProperty()); displayTask.setOnSucceeded(new EventHandler<WorkerStateEvent>() { @Override public void handle(WorkerStateEvent e) { setProgressMode(false); progressBar.progressProperty().unbind(); progressBar.progressProperty().set(0); progressTitle.textProperty().unbind(); progressMessage.textProperty().unbind(); progressTitle.setText(""); progressMessage.setText(""); } }); displayTask.setOnFailed(new EventHandler<WorkerStateEvent>() { @Override public void handle(WorkerStateEvent e) { setProgressMode(false); progressBar.progressProperty().unbind(); progressBar.progressProperty().set(0); progressTitle.textProperty().unbind(); progressMessage.textProperty().unbind(); progressTitle.setText(""); progressMessage.setText(""); Dialogs.showErrorDialog(null, "Error displaying flanking SNPs\n", "Display error", "SNP Viewer", displayTask.getException()); } }); displayTask.setOnCancelled(new EventHandler<WorkerStateEvent>() { @Override public void handle(WorkerStateEvent e) { progressMessage.setText("Display flanking SNPs cancelled"); setProgressMode(false); progressBar.progressProperty().unbind(); progressBar.progressProperty().set(0); progressTitle.textProperty().unbind(); progressMessage.textProperty().unbind(); progressTitle.setText(""); progressMessage.setText(""); Dialogs.showErrorDialog(null, "User cancelled display.", "Display error", "SNP Viewer", displayTask.getException()); } }); cancelButton.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent actionEvent) { displayTask.cancel(); } }); new Thread(displayTask).start(); try { List<String> result = displayTask.get(); FXMLLoader loader = new FXMLLoader(getClass().getResource("RegionReporter.fxml")); Stage stage = new Stage(); Pane page = (Pane) loader.load(); Scene scene = new Scene(page); stage.setScene(scene); stage.setTitle("SNP Viewer Region Summary"); stage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png"))); RegionReporterController regionReporter = loader.<RegionReporterController>getController(); if (result == null) { regionReporter.setCoordinates("Error!"); regionReporter.setIds("Error!"); } else { regionReporter.setCoordinates(result.get(0)); regionReporter.setIds(result.get(1)); } scene.getStylesheets().add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm()); stage.setResizable(false); stage.initModality(Modality.NONE); stage.show(); } catch (InterruptedException | ExecutionException | IOException ex) { Dialogs.showErrorDialog(null, "Can't display flanking SNP IDs" + " - exception caught!\n\nPlease report this error.", "Error!", "SNP Viewer", ex); } }
From source file:fr.amap.lidar.amapvox.gui.MainFrameController.java
private void resetComponents() throws Exception { Platform.runLater(new Runnable() { @Override//from w w w.ja v a 2 s . c o m public void run() { try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/MainFrame.fxml")); Parent root = loader.load(); Scene scene = new Scene(root); scene.getStylesheets().add("/styles/Styles.css"); //stage.setTitle("AMAPVox"); stage = new Stage(); stage.setTitle("AMAPVox"); stage.setScene(scene); } catch (IOException ex) { java.util.logging.Logger.getLogger(MainFrameController.class.getName()).log(Level.SEVERE, null, ex); } } }); /* textFieldInputFileALS.setText(""); textFieldTrajectoryFileALS.setText(""); textFieldOutputFileALS.setText(""); textFieldOutputFileGroundEnergy.setText(""); textfieldDTMPath.setText(""); textFieldInputFileTLS.setText(""); textFieldOutputPathTLS.setText(""); textFieldMergedFileName.setText("merged.vox"); */ }
From source file:snpviewer.SnpViewer.java
public void autoFindRegions() { if (affObserve.isEmpty()) { Dialogs.showErrorDialog(null,/*www .ja va 2 s .c om*/ "Find Regions can only be run when there " + "is at least one Affected sample in the project. Use the " + "'Add Affected' button/menu item to add Affected samples.", "No Affected samples to analyze!", "SnpViewer"); return; } Stage stage = new Stage(); FXMLLoader loader = new FXMLLoader(getClass().getResource("FindRegionsInterface.fxml")); try { Pane page = (Pane) loader.load(); FindRegionsInterfaceController findReg = (FindRegionsInterfaceController) loader.getController(); Scene scene = new Scene(page); stage.setScene(scene); scene.getStylesheets().add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm()); setProgressMode(true); stage.initModality(Modality.APPLICATION_MODAL); stage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png"))); stage.showAndWait(); if (findReg.getCancelled()) { setProgressMode(false); return; } //int w, double r, boolean con, int refWind, double refCut, //int minReportSize, int minReportRun, double het, double dischord) int window = Integer.parseInt(findReg.getWindow()); double regionLength = Double.parseDouble(findReg.getRegionLength()); boolean checkConcordant = findReg.getCheckConcordance(); int refineWindow = Integer.parseInt(findReg.getRefineSize()); double refineTolerance = Double.parseDouble(findReg.getRefineTolerance()); int minReport = Integer.parseInt(findReg.getReportLength()); int minReportRun = Integer.parseInt(findReg.getReportMinSnps()); double hetTolerance = Double.parseDouble(findReg.getHetTolerance()); double dischordTolerance = Double.parseDouble(findReg.getDischordTolerance()); boolean autosomesOnly = findReg.getAutosomesOnly(); LinkedHashSet<String> c = new LinkedHashSet(); for (Object item : chromosomeSelector.getItems()) { if (item instanceof String) { String chrom = (String) item; if (autosomesOnly) { if (chrom.matches("\\d+")) {//only add autosomes c.add(chrom); } } else { c.add(chrom); } } } final RegionFinder regionFinder = new RegionFinder(c, affFiles, unFiles, window, regionLength, checkConcordant, refineWindow, refineTolerance, minReport, minReportRun, hetTolerance, dischordTolerance); regionFinder.setOnSucceeded(new EventHandler<WorkerStateEvent>() { @Override public void handle(WorkerStateEvent t) { progressBar.progressProperty().unbind(); progressMessage.textProperty().unbind(); progressMessage.setText("Done"); progressTitle.textProperty().unbind(); setProgressMode(false); Object result = t.getSource().getValue(); ArrayList<RegionSummary> foundRegions = new ArrayList<>(); if (result instanceof ArrayList) { for (Object r : (ArrayList) result) { if (r instanceof RegionSummary) { RegionSummary reg = (RegionSummary) r; foundRegions.add(reg); } } if (foundRegions.size() > 0) { FXMLLoader tableLoader = new FXMLLoader( getClass().getResource("MultiRegionReporter.fxml")); try { Pane tablePane = (Pane) tableLoader.load(); MultiRegionReporterController multiReg = (MultiRegionReporterController) tableLoader .getController(); Scene tableScene = new Scene(tablePane); Stage tableStage = new Stage(); tableStage.setScene(tableScene); tableScene.getStylesheets().add( SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm()); multiReg.displayData(foundRegions); tableStage.setTitle("Find Regions Results"); tableStage.getIcons() .add(new Image(this.getClass().getResourceAsStream("icon.png"))); tableStage.initModality(Modality.NONE); tableStage.show(); } catch (Exception ex) { Dialogs.showErrorDialog(null, "Error displaying" + " results from Find Regions Method.", "Find Regions Error!", "SnpViewer", ex); } } else { Dialogs.showInformationDialog(null, "No regions " + "found.", "Find Regions", "SnpViewer"); } savedRegions.addAll(foundRegions); RegionSummary sorter = new RegionSummary(); sorter.mergeRegionsByPosition(savedRegions); } saveProject(); int c = chromosomeSelector.getSelectionModel().getSelectedIndex(); if (c > -1) { selectionOverlayPane.getChildren().clear(); selectionOverlayPane.getChildren().add(dragSelectRectangle); drawSavedRegions((String) chromosomeBoxList[c]); } progressMessage.setText(""); progressTitle.setText(""); progressBar.progressProperty().set(0); } }); regionFinder.setOnFailed(new EventHandler<WorkerStateEvent>() { @Override public void handle(WorkerStateEvent t) { progressBar.progressProperty().unbind(); progressMessage.textProperty().unbind(); progressMessage.setText("Failed!"); progressTitle.textProperty().unbind(); Dialogs.showErrorDialog(null, "Find Regions method failed.", "Error!", "SnpViewer", t.getSource().getException()); setProgressMode(false); progressMessage.setText(""); progressTitle.setText(""); progressBar.progressProperty().set(0); } }); regionFinder.setOnCancelled(new EventHandler<WorkerStateEvent>() { @Override public void handle(WorkerStateEvent t) { progressBar.progressProperty().unbind(); progressMessage.textProperty().unbind(); progressMessage.setText("Cancelled"); progressTitle.textProperty().unbind(); Dialogs.showErrorDialog(null, "Find Regions method Cancelled.", "Cancelled", "SnpViewer"); setProgressMode(false); progressMessage.setText(""); progressTitle.setText(""); progressBar.progressProperty().set(0); } }); cancelButton.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent actionEvent) { regionFinder.cancel(); } }); progressBar.progressProperty().unbind(); progressMessage.textProperty().unbind(); progressTitle.textProperty().unbind(); progressBar.progressProperty().bind(regionFinder.progressProperty()); progressMessage.textProperty().bind(regionFinder.messageProperty()); progressTitle.textProperty().bind(regionFinder.titleProperty()); regionFinder.start(); } catch (IOException ex) { Dialogs.showErrorDialog(null, "Error starting Find Regions method.", "Error!", "SnpViewer", ex); progressBar.progressProperty().unbind(); progressMessage.textProperty().unbind(); progressTitle.textProperty().unbind(); setProgressMode(false); } }
From source file:snpviewer.SnpViewer.java
public void showAbout(ActionEvent ev) { try {// w ww .ja va 2 s . com FXMLLoader loader = new FXMLLoader(getClass().getResource("about.fxml")); Pane page = (Pane) loader.load(); Scene scene = new Scene(page); Stage stage = new Stage(); stage.setScene(scene); scene.getStylesheets().add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm()); AboutController controller = loader.getController(); controller.setVersion(VERSION); stage.initModality(Modality.APPLICATION_MODAL); stage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png"))); stage.setTitle("About SnpViewer"); stage.show(); } catch (Exception ex) { Dialogs.showErrorDialog(null, "Error showing about information - see" + " details for stack trace", "ERROR!", "SnpViewer", ex); } }
From source file:fr.amap.lidar.amapvox.gui.MainFrameController.java
private void exportDartMaket(final File voxelFile) { Stage exportDartFrame = new Stage(); DartExporterFrameController controller; Parent root;//from www .j a v a 2 s . c o m if (Util.checkIfVoxelFile(voxelFile)) { try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/export/DartExporterDialog.fxml")); root = loader.load(); controller = loader.getController(); controller.setStage(exportDartFrame); controller.setParent(this); controller.setVoxelFile(voxelFile); exportDartFrame.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } exportDartFrame.show(); } else { logger.error("File is not a voxel file: " + voxelFile.getAbsolutePath()); Alert alert = new Alert(AlertType.CONFIRMATION); alert.setHeaderText("Incorrect file"); alert.setContentText("File is corrupted or cannot be read!\n" + "Do you want to keep it?"); Optional<ButtonType> result = alert.showAndWait(); if (result.get() == ButtonType.CANCEL) { listViewProductsFiles.getItems().remove(voxelFile); } } }
From source file:fr.amap.lidar.amapvox.gui.MainFrameController.java
private void editVoxelSpace(final File voxelFile) { if (editingFrameOpened) { return;/*from w ww . j a v a 2s. com*/ } editingFrameOpened = true; voxelsToRemove.clear(); final String attributeToView = "PadBVTotal"; //window size ObservableList<Screen> screens = Screen.getScreens(); if (screens != null && screens.size() > 0) { SCREEN_WIDTH = screens.get(0).getBounds().getWidth(); SCREEN_HEIGHT = screens.get(0).getBounds().getHeight(); } try { Service s = new Service() { @Override protected Task createTask() { return new Task() { @Override protected Object call() throws Exception { SimpleViewer viewer3D = new SimpleViewer((int) (SCREEN_WIDTH / 4.0d), (int) (SCREEN_HEIGHT / 4.0d), (int) (SCREEN_WIDTH / 1.5d), (int) (SCREEN_HEIGHT / 2.0d), voxelFile.toString()); fr.amap.viewer3d.object.scene.Scene scene = viewer3D.getScene(); /** * *VOXEL SPACE** */ updateMessage("Loading voxel space: " + voxelFile.getAbsolutePath()); final VoxelSpaceSceneObject voxelSpace = new VoxelSpaceSceneObject(voxelFile); voxelSpace.setMousePickable(true); voxelSpace.addVoxelSpaceListener(new VoxelSpaceAdapter() { @Override public void voxelSpaceCreationProgress(int progress) { updateProgress(progress, 100); } }); voxelSpace.loadVoxels(); float voxelResolution = voxelSpace.data.getVoxelSpaceInfos().getResolution(); VoxelFileReader reader = new VoxelFileReader(voxelFile); VoxelSpaceInfos infos = reader.getVoxelSpaceInfos(); final SceneObject boundingBox = new SimpleSceneObject(); boundingBox.setMesh(GLMeshFactory.createBoundingBox((float) infos.getMinCorner().x, (float) infos.getMinCorner().y, (float) infos.getMinCorner().z, (float) infos.getMaxCorner().x, (float) infos.getMaxCorner().y, (float) infos.getMaxCorner().z)); SimpleShader s = new SimpleShader(); s.setColor(new Vec3F(1, 0, 0)); boundingBox.setShader(s); boundingBox.setDrawType(GLMesh.DrawType.LINES); scene.addSceneObject(boundingBox); /* * Voxel information */ StringToImage stringToImage = new StringToImage(1024, 1024); stringToImage.setAdaptableFontSize(true); stringToImage.setBackgroundColor(new Color(255, 255, 255, 127)); stringToImage.setTextColor(new Color(0, 0, 0, 255)); BufferedImage image = new BufferedImage(1024, 1024, BufferedImage.TYPE_INT_ARGB); Texture texture = new Texture(image); int pickingInfoObjectWidth = viewer3D.getWidth() / 5; int pickingInfoObjectHeight = viewer3D.getHeight() / 5; SceneObject pickingInfoObject = SceneObjectFactory.createTexturedPlane( new Vec3F(viewer3D.getWidth() - pickingInfoObjectWidth, viewer3D.getHeight() - pickingInfoObjectHeight, 0), pickingInfoObjectWidth, pickingInfoObjectHeight, texture); pickingInfoObject.setShader(new TextureShader()); pickingInfoObject.setDrawType(GLMesh.DrawType.TRIANGLES); SceneObject sceneObjectSelectedVox = new SimpleSceneObject( GLMeshFactory.createBoundingBox(-voxelResolution / 2.0f, -voxelResolution / 2.0f, -voxelResolution / 2.0f, voxelResolution / 2.0f, voxelResolution / 2.0f, voxelResolution / 2.0f), false); SimpleShader simpleShader = new SimpleShader(); simpleShader.setColor(new Vec3F(1, 0, 0)); sceneObjectSelectedVox.setVisible(false); sceneObjectSelectedVox.setShader(simpleShader); sceneObjectSelectedVox.setDrawType(GLMesh.DrawType.LINES); viewer3D.getScene().addSceneObject(sceneObjectSelectedVox); final SimpleObjectProperty<VoxelObject> selectedVoxel = new SimpleObjectProperty<>(); SceneObjectListener listener = new SceneObjectListener() { @Override public void clicked(SceneObject sceneObject, MousePicker mousePicker, Point3D intersection) { Vec3F camLocation = viewer3D.getScene().getCamera().getLocation(); selectedVoxel.set(voxelSpace.doPicking(mousePicker)); if (selectedVoxel.get() != null) { String[][] lines = new String[voxelSpace.getColumnsNames().length][2]; for (int i = 0; i < voxelSpace.getColumnsNames().length; i++) { lines[i][0] = voxelSpace.getColumnsNames()[i]; float attribut = selectedVoxel.get().getAttributs()[i]; if (Float.isNaN(attribut)) { lines[i][1] = "NaN"; } else { lines[i][1] = String .valueOf(Math.round(attribut * 1000.0f) / 1000.0f); } } arrangeText(lines); String text = ""; for (int i = 0; i < voxelSpace.getColumnsNames().length; i++) { String attribut = lines[i][0] + " " + lines[i][1]; text += attribut + "\n"; } stringToImage.setText(text, 0, 0); texture.setBufferedImage(stringToImage.buildImage()); Point3f voxelPosition = voxelSpace.getVoxelPosition(selectedVoxel.get().$i, selectedVoxel.get().$j, selectedVoxel.get().$k); sceneObjectSelectedVox.setPosition( new Point3F(voxelPosition.x, voxelPosition.y, voxelPosition.z)); sceneObjectSelectedVox.setVisible(true); pickingInfoObject.setVisible(true); } else { sceneObjectSelectedVox.setVisible(false); pickingInfoObject.setVisible(false); } } }; final SimpleIntegerProperty currentZCropIndex = new SimpleIntegerProperty(0); viewer3D.addEventListener(new EventManager(null, new InputKeyListener()) { @Override public void updateEvents() { if (this.keyboard.isKeyClicked(KeyEvent.VK_DELETE)) { if (selectedVoxel.get() != null) { selectedVoxel.get().setAlpha(0); selectedVoxel.get().isHidden = true; voxelSpace.updateVao(); sceneObjectSelectedVox.setVisible(false); pickingInfoObject.setVisible(false); voxelsToRemove.add(new Point3i(selectedVoxel.get().$i, selectedVoxel.get().$j, selectedVoxel.get().$k)); } } } }); voxelSpace.addSceneObjectListener(listener); voxelSpace.changeCurrentAttribut(attributeToView); voxelSpace.setShader(new InstanceLightedShader()); voxelSpace.setDrawType(GLMesh.DrawType.TRIANGLES); scene.addSceneObject(voxelSpace); scene.addSceneObjectAsHud(pickingInfoObject); /** * *scale** */ updateMessage("Generating scale"); final Texture scaleTexture = new Texture(ScaleGradient.createColorScaleBufferedImage( voxelSpace.getGradient(), voxelSpace.getAttributValueMin(), voxelSpace.getAttributValueMax(), viewer3D.getWidth() - 80, (int) (viewer3D.getHeight() / 20), ScaleGradient.Orientation.HORIZONTAL, 5, 8)); SceneObject scalePlane = SceneObjectFactory.createTexturedPlane(new Vec3F(40, 20, 0), (int) (viewer3D.getWidth() - 80), (int) (viewer3D.getHeight() / 20), scaleTexture); scalePlane.setShader(new TextureShader()); scalePlane.setDrawType(GLMesh.DrawType.TRIANGLES); scene.addSceneObjectAsHud(scalePlane); voxelSpace.addPropertyChangeListener("gradientUpdated", new PropertyChangeListener() { @Override public void propertyChange(PropertyChangeEvent evt) { BufferedImage image = ScaleGradient.createColorScaleBufferedImage( voxelSpace.getGradient(), voxelSpace.getAttributValueMin(), voxelSpace.getAttributValueMax(), viewer3D.getWidth() - 80, (int) (viewer3D.getHeight() / 20), ScaleGradient.Orientation.HORIZONTAL, 5, 8); scaleTexture.setBufferedImage(image); } }); /** * *light** */ scene.setLightPosition( new Point3F(voxelSpace.getGravityCenter().x, voxelSpace.getGravityCenter().y, voxelSpace.getGravityCenter().z + voxelSpace.widthZ + 100)); /** * *camera** */ TrackballCamera trackballCamera = new TrackballCamera(); trackballCamera.setPivot(voxelSpace); trackballCamera .setLocation(new Vec3F(voxelSpace.getGravityCenter().x + voxelSpace.widthX, voxelSpace.getGravityCenter().y + voxelSpace.widthY, voxelSpace.getGravityCenter().z + voxelSpace.widthZ)); viewer3D.getScene().setCamera(trackballCamera); Platform.runLater(new Runnable() { @Override public void run() { final Stage toolBarFrameStage = new Stage(); final FXMLLoader loader = new FXMLLoader( getClass().getResource("/fxml/ToolBoxFrame.fxml")); try { stage.setAlwaysOnTop(false); Parent root = loader.load(); toolBarFrameStage.setScene(new Scene(root)); toolBarFrameStage.initStyle(StageStyle.UNDECORATED); toolBarFrameStage.setAlwaysOnTop(true); ToolBoxFrameController toolBarFrameController = loader.getController(); toolBarFrameController.setStage(toolBarFrameStage); toolBarFrameStage.setX(viewer3D.getPosition().getX()); toolBarFrameStage.setY(viewer3D.getPosition().getY()); toolBarFrameController.setJoglListener(viewer3D.getJoglContext()); toolBarFrameController.setAttributes(attributeToView, voxelSpace.data.getVoxelSpaceInfos().getColumnNames()); toolBarFrameStage.focusedProperty() .addListener(new ChangeListener<Boolean>() { @Override public void changed( ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (newValue) { toolBarFrameStage.setAlwaysOnTop(true); toolBarFrameStage.setX(viewer3D.getPosition().getX()); toolBarFrameStage.setY(viewer3D.getPosition().getY()); } else if (!viewer3D.isFocused()) { toolBarFrameStage.setAlwaysOnTop(false); } } }); toolBarFrameController.initContent(voxelSpace); toolBarFrameStage.setAlwaysOnTop(true); toolBarFrameStage.show(); double maxToolBoxHeight = toolBarFrameStage.getHeight(); viewer3D.getJoglContext().setStartX((int) toolBarFrameStage.getWidth()); viewer3D.getRenderFrame().addWindowListener(new WindowAdapter() { @Override public void windowResized(com.jogamp.newt.event.WindowEvent we) { Window window = (Window) we.getSource(); final double height = window.getHeight(); Platform.runLater(new Runnable() { @Override public void run() { if (height < maxToolBoxHeight) { toolBarFrameStage.setHeight(height); } else { toolBarFrameStage.setHeight(maxToolBoxHeight); } toolBarFrameStage.setX(viewer3D.getPosition().getX()); toolBarFrameStage.setY(viewer3D.getPosition().getY()); } }); } @Override public void windowMoved(com.jogamp.newt.event.WindowEvent we) { Platform.runLater(new Runnable() { @Override public void run() { toolBarFrameStage.setX(viewer3D.getPosition().getX()); toolBarFrameStage.setY(viewer3D.getPosition().getY()); } }); } @Override public void windowDestroyed(com.jogamp.newt.event.WindowEvent we) { Platform.runLater(new Runnable() { @Override public void run() { toolBarFrameStage.close(); if (fcSaveVoxelFileForAreaExtracting == null) { fcSaveVoxelFileForAreaExtracting = new FileChooserContext(); if (fcOpenVoxelFileForAreaExtracting != null) { fcSaveVoxelFileForAreaExtracting.fc .setInitialDirectory( fcOpenVoxelFileForAreaExtracting.lastSelectedFile .getParentFile()); } } File selectedFile = fcSaveVoxelFileForAreaExtracting .showSaveDialog(stage); if (selectedFile != null) { VoxelFileReader reader; BufferedWriter writer = null; try { reader = new VoxelFileReader(voxelFile, true); VoxelSpaceInfos infos = reader.getVoxelSpaceInfos(); writer = new BufferedWriter( new FileWriter(selectedFile)); writer.write(infos.toString() + "\n"); Iterator<Voxel> iterator = reader.iterator(); while (iterator.hasNext()) { Voxel voxel = iterator.next(); if (voxelsToRemove.contains(new Point3i( voxel.$i, voxel.$j, voxel.$k))) { voxel.PadBVTotal = 0; voxel.nbEchos = 0; voxel.transmittance = 1; voxel.bvIntercepted = 0; } writer.write(voxel + "\n"); } writer.close(); addFileToProductsList(selectedFile); } catch (Exception ex) { showErrorDialog(ex); } finally { try { if (writer != null) { writer.close(); } } catch (IOException ex) { showErrorDialog(ex); } } } editingFrameOpened = false; } }); } @Override public void windowGainedFocus(com.jogamp.newt.event.WindowEvent we) { viewer3D.setIsFocused(true); Platform.runLater(new Runnable() { @Override public void run() { if (!toolBarFrameStage.isShowing()) { toolBarFrameStage.toFront(); } toolBarFrameStage.setIconified(false); toolBarFrameStage.setAlwaysOnTop(true); toolBarFrameStage.setX(viewer3D.getPosition().getX()); toolBarFrameStage.setY(viewer3D.getPosition().getY()); } }); } @Override public void windowLostFocus(com.jogamp.newt.event.WindowEvent e) { viewer3D.setIsFocused(false); Platform.runLater(new Runnable() { @Override public void run() { if (!toolBarFrameStage.focusedProperty().get()) { toolBarFrameStage.setIconified(true); toolBarFrameStage.setAlwaysOnTop(false); } } }); } }); viewer3D.show(); toolBarFrameStage.setAlwaysOnTop(true); } catch (IOException e) { showErrorDialog(new Exception("Loading ToolBarFrame.fxml failed", e)); } catch (Exception e) { showErrorDialog(new Exception("Error occured during toolbar init", e)); } } }); return null; } }; } }; ProgressDialog d = new ProgressDialog(s); d.show(); s.start(); } catch (Exception ex) { showErrorDialog(new Exception("Cannot launch 3d view", ex)); } }