List of usage examples for java.util Vector addAll
public boolean addAll(Collection<? extends E> c)
From source file:oscar.oscarRx.util.RxUtil.java
public static String findInterDrugStr(final UserPropertyDAO propDAO, String provider, final RxSessionBean bean) { //quiry mydrugref database to get a vector with all interacting drugs //if effect is not null or effect is not empty string //get a list of all pending prescriptions' ATC codes //compare if anyone match, //if yes, get it's randomId and set an session attribute //if not, do nothing UserProperty prop = propDAO.getProp(provider, UserProperty.MYDRUGREF_ID); String myDrugrefId = null;/*from ww w .j a va 2 s.c o m*/ if (prop != null) { myDrugrefId = prop.getValue(); MiscUtils.getLogger().debug("3myDrugrefId" + myDrugrefId); } RxPrescriptionData.Prescription[] rxs = bean.getStash(); //acd contains all atccodes in stash Vector<String> acd = new Vector<String>(); for (RxPrescriptionData.Prescription rxItem : rxs) { acd.add(rxItem.getAtcCode()); } logger.debug("3acd=" + acd); String[] str = new String[] { "warnings_byATC,bulletins_byATC,interactions_byATC,get_guidelines" }; //NEW more efficent way of sending multiple requests at the same time. Vector allInteractions = new Vector(); for (String command : str) { try { Vector v = getMyDrugrefInfo(command, acd, myDrugrefId); MiscUtils.getLogger().debug("2v in for loop: " + v); if (v != null && v.size() > 0) { allInteractions.addAll(v); } MiscUtils.getLogger().debug("3after all.addAll(v): " + allInteractions); } catch (Exception e) { log2.debug("3command :" + command + " " + e.getMessage()); MiscUtils.getLogger().error("Error", e); } } String retStr = ""; HashMap rethm = new HashMap(); for (RxPrescriptionData.Prescription rxItem : rxs) { MiscUtils.getLogger().debug("rxItem=" + rxItem.getDrugName()); Vector uniqueDrugNameList = new Vector(); for (int i = 0; i < allInteractions.size(); i++) { Hashtable hb = (Hashtable) allInteractions.get(i); String interactingAtc = (String) hb.get("atc"); String interactingDrugName = (String) hb.get("drug2"); String effectStr = (String) hb.get("effect"); String sigStr = (String) hb.get("significance"); MiscUtils.getLogger().debug("findInterDrugStr=" + hb); if (sigStr != null) { if (sigStr.equals("1")) { sigStr = "minor"; } else if (sigStr.equals("2")) { sigStr = "moderate"; } else if (sigStr.equals("3")) { sigStr = "major"; } else { sigStr = "unknown"; } } else { sigStr = "unknown"; } if (interactingAtc != null && interactingDrugName != null && rxItem.getAtcCode().equals(interactingAtc) && effectStr != null && effectStr.length() > 0 && !effectStr.equalsIgnoreCase("N") && !effectStr.equals(" ")) { MiscUtils.getLogger().debug("interactingDrugName=" + interactingDrugName); RxPrescriptionData.Prescription rrx = findRxFromDrugNameOrGN(rxs, interactingDrugName); if (rrx != null && !uniqueDrugNameList.contains(rrx.getDrugName())) { MiscUtils.getLogger().debug("rrx.getDrugName()=" + rrx.getDrugName()); uniqueDrugNameList.add(rrx.getDrugName()); String key = sigStr + "_" + rxItem.getRandomId(); if (rethm.containsKey(key)) { String val = (String) rethm.get(key); val += ";" + rrx.getDrugName(); rethm.put(key, val); } else { rethm.put(key, rrx.getDrugName()); } key = sigStr + "_" + rrx.getRandomId(); if (rethm.containsKey(key)) { String val = (String) rethm.get(key); val += ";" + rxItem.getDrugName(); rethm.put(key, val); } else { rethm.put(key, rxItem.getDrugName()); } } } } MiscUtils.getLogger().debug("***next rxItem***"); } MiscUtils.getLogger().debug("rethm=" + rethm); retStr = rethm.toString(); retStr = retStr.replace("}", ""); retStr = retStr.replace("{", ""); return retStr; }
From source file:com.github.hdl.tensorflow.yarn.app.TFAmContainer.java
public StringBuilder makeCommands(long amMemory, String appMasterMainClass, int containerMemory, int containerVirtualCores, int workerNumContainers, int psNumContainers, String jarDfsPath, Vector<CharSequence> containerRetryOptions, String jniSoDfsPath) { // Set the necessary command to execute the application master Vector<CharSequence> vargs = new Vector<CharSequence>(30); // Set java executable command LOG.info("Setting up app master command"); vargs.add(ApplicationConstants.Environment.JAVA_HOME.$$() + "/bin/java"); // Set Xmx based on am memory size vargs.add("-Xmx" + amMemory + "m"); // Set class name vargs.add(appMasterMainClass);//w w w . j ava2s .c o m // Set params for Application Master vargs.add("--container_memory " + String.valueOf(containerMemory)); vargs.add("--container_vcores " + String.valueOf(containerVirtualCores)); vargs.add(TFApplication.makeOption(TFApplication.OPT_TF_WORKER_NUM, String.valueOf(workerNumContainers))); vargs.add(TFApplication.makeOption(TFApplication.OPT_TF_PS_NUM, String.valueOf(psNumContainers))); vargs.add("--" + TFApplication.OPT_TF_SERVER_JAR + " " + String.valueOf(jarDfsPath)); if (jniSoDfsPath != null && !jniSoDfsPath.equals("")) { vargs.add(TFApplication.makeOption(TFApplication.OPT_TF_JNI_SO, jniSoDfsPath)); } vargs.addAll(containerRetryOptions); vargs.add("1>" + ApplicationConstants.LOG_DIR_EXPANSION_VAR + "/AppMaster.stdout"); vargs.add("2>" + ApplicationConstants.LOG_DIR_EXPANSION_VAR + "/AppMaster.stderr"); // Get final commmand StringBuilder command = new StringBuilder(); for (CharSequence str : vargs) { command.append(str).append(" "); } return command; }
From source file:edu.ku.brc.af.ui.forms.IconViewObj.java
public synchronized void setDataIntoUI() { ignoreChanges = true;/*from ww w .j a v a2s. c o m*/ if (mainComp == null) { initMainComp(); } iconTray.removeAllItems(); Vector<Object> dataObjects = new Vector<Object>(); dataObjects.addAll(dataSet); if (this.orderableDataClass) { Vector<Orderable> sortedDataObjects = new Vector<Orderable>(); for (Object obj : dataObjects) { if (obj instanceof Orderable) { sortedDataObjects.add((Orderable) obj); } } Collections.sort(sortedDataObjects, new OrderableComparator()); dataObjects.clear(); dataObjects.addAll(sortedDataObjects); } for (Object o : dataObjects) { if (!(o instanceof FormDataObjIFace)) { log.error("Icon view data set contains non-FormDataObjIFace objects. Item being ignored."); mainComp.removeAll(); JLabel lbl = createLabel(getResourceString("Error")); mainComp.add(lbl); dataTypeError = true; return; } FormDataObjIFace formDataObj = (FormDataObjIFace) o; iconTray.addItem(formDataObj); } ignoreChanges = false; }
From source file:edu.ku.brc.specify.tasks.subpane.wb.FormPane.java
protected Vector<Object> getValues(final WorkbenchTemplateMappingItem wbtmi) { Vector<WorkbenchTemplateMappingItem> wbtmis = new Vector<WorkbenchTemplateMappingItem>(); wbtmis.addAll(workbench.getWorkbenchTemplate().getWorkbenchTemplateMappingItems()); Collections.sort(wbtmis);/*w w w . j a va 2 s .c om*/ int wbCol = -1; for (int c = 0; c < wbtmis.size(); c++) { if (wbtmis.get(c) == wbtmi) { wbCol = c; break; } } if (wbCol != -1) { if (workbenchPane.getSpreadSheet().getColumnModel().getColumn(wbCol) .getCellEditor() instanceof WorkbenchPaneSS.GridCellListEditor) { ComboBoxModel model = ((WorkbenchPaneSS.GridCellListEditor) workbenchPane.getSpreadSheet() .getColumnModel().getColumn(wbCol).getCellEditor()).getList(); Vector<Object> result = new Vector<Object>(); for (int i = 0; i < model.getSize(); i++) { result.add(model.getElementAt(i)); } return result; } } return null; }
From source file:com.dien.upload.server.UploadServlet.java
/** * This method parses the submit action, puts in session a listener where the * progress status is updated, and eventually stores the received data in * the user session.//from w ww.jav a 2s. c om * * returns null in the case of success or a string with the error * */ @SuppressWarnings("unchecked") protected String parsePostRequest(HttpServletRequest request, HttpServletResponse response) { try { String delay = request.getParameter(PARAM_DELAY); uploadDelay = Integer.parseInt(delay); } catch (Exception e) { } HttpSession session = request.getSession(); logger.debug("UPLOAD-SERVLET (" + session.getId() + ") new upload request received."); AbstractUploadListener listener = getCurrentListener(request); if (listener != null) { if (listener.isFrozen() || listener.isCanceled() || listener.getPercent() >= 100) { removeCurrentListener(request); } else { String error = getMessage("busy"); logger.error("UPLOAD-SERVLET (" + session.getId() + ") " + error); return error; } } // Create a file upload progress listener, and put it in the user session, // so the browser can use ajax to query status of the upload process listener = createNewListener(request); List<FileItem> uploadedItems; try { // Call to a method which the user can override checkRequest(request); // Create the factory used for uploading files, FileItemFactory factory = getFileItemFactory(request.getContentLength()); ServletFileUpload uploader = new ServletFileUpload(factory); uploader.setSizeMax(maxSize); uploader.setProgressListener(listener); // Receive the files logger.debug("UPLOAD-SERVLET (" + session.getId() + ") parsing HTTP POST request "); uploadedItems = uploader.parseRequest(request); logger.debug("UPLOAD-SERVLET (" + session.getId() + ") parsed request, " + uploadedItems.size() + " items received."); // Received files are put in session Vector<FileItem> sessionFiles = (Vector<FileItem>) getSessionFileItems(request); if (sessionFiles == null) { sessionFiles = new Vector<FileItem>(); } String error = ""; session.setAttribute(SESSION_LAST_FILES, uploadedItems); if (uploadedItems.size() > 0) { sessionFiles.addAll(uploadedItems); String msg = ""; for (FileItem i : sessionFiles) { msg += i.getFieldName() + " => " + i.getName() + "(" + i.getSize() + " bytes),"; } logger.debug("UPLOAD-SERVLET (" + session.getId() + ") puting items in session: " + msg); session.setAttribute(SESSION_FILES, sessionFiles); } else { logger.error("UPLOAD-SERVLET (" + session.getId() + ") error NO DATA received "); error += getMessage("no_data"); } return error.length() > 0 ? error : null; } catch (SizeLimitExceededException e) { RuntimeException ex = new UploadSizeLimitException(e.getPermittedSize(), e.getActualSize()); listener.setException(ex); throw ex; } catch (UploadSizeLimitException e) { listener.setException(e); throw e; } catch (UploadCanceledException e) { listener.setException(e); throw e; } catch (UploadTimeoutException e) { listener.setException(e); throw e; } catch (Exception e) { logger.error("UPLOAD-SERVLET (" + request.getSession().getId() + ") Unexpected Exception -> " + e.getMessage() + "\n" + stackTraceToString(e)); e.printStackTrace(); RuntimeException ex = new UploadException(e); listener.setException(ex); throw ex; } }
From source file:it.classhidra.core.controller.bsController.java
public static Vector getActionStreams_(String id_action) { Vector _streams_orig = (Vector) getAction_config().get_streams_apply_to_actions().get("*"); //Modifica 20100521 Warning /*/*ww w . j a va 2 s . co m*/ try{ _streams = (Vector)util_cloner.clone(_streams_orig); }catch(Exception e){ } */ Vector _streams4action = (Vector) getAction_config().get_streams_apply_to_actions().get(id_action); if (_streams4action == null) return (_streams_orig == null) ? new Vector() : _streams_orig; else { Vector _streams = new Vector(); if (_streams_orig != null) _streams.addAll(_streams_orig); Vector _4add = new Vector(); HashMap _4remove = new HashMap(); for (int i = 0; i < _streams4action.size(); i++) { info_stream currentis = (info_stream) _streams4action.get(i); if (currentis.get_apply_to_action() != null) { info_apply_to_action currentiata = (info_apply_to_action) currentis.get_apply_to_action() .get(id_action); if (currentiata.getExcluded() != null && currentiata.getExcluded().equalsIgnoreCase("true")) _4remove.put(currentis.getName(), currentis.getName()); else _4add.add(currentis); } } _streams.addAll(_4add); if (_4remove.size() > 0) { int i = 0; while (i < _streams.size()) { info_stream currentis = (info_stream) _streams.get(i); if (_4remove.get(currentis.getName()) != null) _streams.remove(i); else i++; } } _streams = new util_sort().sort(_streams, "int_order", "A"); return _streams; } }
From source file:org.eurocarbdb.application.glycoworkbench.plugin.reporting.AnnotationReportCanvas.java
public void copy() { Vector<Glycan> sel_structures = new Vector<Glycan>(); for (AnnotationObject a : selections) sel_structures.addAll(a.getStructures()); ClipUtils.setContents(new GlycanSelection(theGlycanRenderer, sel_structures)); }
From source file:es.emergya.ui.plugins.AdminPanel.java
/** * //from w ww .j av a 2 s .c o m * @param columnNames * nombres de las columnas de la tabla * @param filterOptions * lista de opciones de un combobox. Si esta vacio entonces es un * textfield * @param noFiltrarAction * @param filtrarAction */ public void generateTable(String[] columnNames, Object[][] filterOptions, AdminPanel.NoFiltrarAction noFiltrarAction, AdminPanel.FiltrarAction filtrarAction) { if (columnNames == null) { columnNames = new String[] {}; } if (filterOptions == null) { filterOptions = new Object[][] {}; } String filterString = "["; for (Object[] o : filterOptions) { filterString += Arrays.toString(o) + " "; } filterString += "]"; log.debug("generateTable( columnNames = " + Arrays.toString(columnNames) + ", filterOptions = " + filterString + ")"); tablePanel.removeAll(); int columnNamesLength = columnNames.length; if (!getCanDelete()) columnNamesLength++; MyTableModel dataModel = new MyTableModel(1, columnNamesLength + 2) { private static final long serialVersionUID = 1348355328684460769L; @Override public boolean isCellEditable(int row, int column) { return column != 0 && !invisibleFilterCols.contains(column); } }; filters = new JTable(dataModel) { private static final long serialVersionUID = -8266991359840905405L; @Override public Component prepareRenderer(TableCellRenderer renderer, int row, int column) { Component c = super.prepareRenderer(renderer, row, column); if (isCellEditable(row, column) && column != getColumnCount() - 1) { if (c instanceof JTextField) { ((JTextField) c).setBorder(new MatteBorder(1, 1, 1, 1, Color.BLACK)); } else if (c instanceof JComboBox) { ((JComboBox) c).setBorder(new MatteBorder(1, 1, 1, 1, Color.BLACK)); } else if (c instanceof JLabel) { ((JLabel) c).setBorder(new MatteBorder(1, 1, 1, 1, Color.BLACK)); } } return c; } }; filters.setSurrendersFocusOnKeystroke(true); filters.setShowGrid(false); filters.setRowHeight(22); filters.setOpaque(false); for (Integer i = 0; i < filterOptions.length; i++) { final Object[] items = filterOptions[i]; if (items != null && items.length > 1) { setComboBoxEditor(i, items); } else { final DefaultCellEditor defaultCellEditor = new DefaultCellEditor(new JTextField()); defaultCellEditor.setClickCountToStart(1); filters.getColumnModel().getColumn(i + 1).setCellEditor(defaultCellEditor); } } filters.setRowSelectionAllowed(false); filters.setDragEnabled(false); filters.setColumnSelectionAllowed(false); filters.setDefaultEditor(JButton.class, new JButtonCellEditor()); filters.setDefaultRenderer(Object.class, new DefaultTableRenderer() { private static final long serialVersionUID = -4811729559786534118L; @Override public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) { Component c = super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column); if (invisibleFilterCols.contains(column)) c = new JLabel(""); return c; } }); filters.setDefaultRenderer(JButton.class, new TableCellRenderer() { @Override public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) { JButton b = (JButton) value; b.setBorderPainted(false); b.setContentAreaFilled(false); return b; } }); filters.setDefaultRenderer(JLabel.class, new TableCellRenderer() { @Override public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) { return (JLabel) value; } }); filters.setDefaultEditor(JButton.class, new JButtonCellEditor()); filters.getModel().setValueAt(new JLabel(""), 0, 0); JButton jButton2 = new JButton(noFiltrarAction); JButton jButton = new JButton(filtrarAction); jButton.setBorderPainted(false); jButton2.setBorderPainted(false); jButton.setContentAreaFilled(false); jButton2.setContentAreaFilled(false); if (jButton.getIcon() != null) jButton.setPreferredSize( new Dimension(jButton.getIcon().getIconWidth(), jButton.getIcon().getIconHeight())); if (jButton2.getIcon() != null) jButton2.setPreferredSize( new Dimension(jButton2.getIcon().getIconWidth(), jButton2.getIcon().getIconHeight())); filters.getModel().setValueAt(jButton, 0, columnNamesLength - 1); filters.getColumnModel().getColumn(columnNamesLength - 1).setMinWidth(jButton.getWidth() + 24); filters.getModel().setValueAt(jButton2, 0, columnNamesLength); filters.getColumnModel().getColumn(columnNamesLength).setMinWidth(jButton2.getWidth() + 14); cuenta.setHorizontalAlignment(JLabel.CENTER); cuenta.setText("?/?"); filters.getModel().setValueAt(cuenta, 0, columnNamesLength + 1); tablePanel.add(filters, BorderLayout.NORTH); Vector<String> headers = new Vector<String>(); headers.add(""); headers.addAll(Arrays.asList(columnNames)); MyTableModel model = new MyTableModel(headers, 0); table = new JTable(model) { private static final long serialVersionUID = 949284378605881770L; private int highLightedRow = -1; private Rectangle dirtyRegion = null; public Component prepareRenderer(TableCellRenderer renderer, int row, int column) { Component c = super.prepareRenderer(renderer, row, column); try { if (AdminPanel.this.myRendererColoring != null) c.setBackground(AdminPanel.this.myRendererColoring .getColor(AdminPanel.this.table.getValueAt(row, 1))); } catch (Throwable t) { log.error("Error al colorear la celda: " + t); } return c; } @Override protected void processMouseMotionEvent(MouseEvent e) { try { int row = rowAtPoint(e.getPoint()); Graphics g = getGraphics(); if (row == -1) { highLightedRow = -1; } // row changed if (highLightedRow != row) { if (null != dirtyRegion) { paintImmediately(dirtyRegion); } for (int j = 0; j < getRowCount(); j++) { if (row == j) { // highlight Rectangle firstRowRect = getCellRect(row, 0, false); Rectangle lastRowRect = getCellRect(row, getColumnCount() - 1, false); dirtyRegion = firstRowRect.union(lastRowRect); g.setColor(new Color(0xff, 0xff, 0, 100)); g.fillRect((int) dirtyRegion.getX(), (int) dirtyRegion.getY(), (int) dirtyRegion.getWidth(), (int) dirtyRegion.getHeight()); highLightedRow = row; } } } } catch (Exception ex) { } super.processMouseMotionEvent(e); } }; table.setRowHeight(22); table.setOpaque(false); // table.setAutoCreateRowSorter(true); table.setDragEnabled(false); table.getTableHeader().setReorderingAllowed(false); table.getTableHeader().setResizingAllowed(false); table.setDefaultEditor(JButton.class, new JButtonCellEditor()); table.setDefaultRenderer(JButton.class, new TableCellRenderer() { @Override public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) { JButton b = (JButton) value; if (b != null) { b.setBorderPainted(false); b.setContentAreaFilled(false); } return b; } }); JScrollPane jScrollPane = new JScrollPane(table); jScrollPane.setOpaque(false); jScrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS); jScrollPane.getViewport().setOpaque(false); tablePanel.add(jScrollPane, BorderLayout.CENTER); }
From source file:gda.scan.ScanDataPoint.java
/** * Just returns array of positions. Strings will be an empty element. * /*from www . j a va2 s . c o m*/ * @return all scannable positions. */ @Override public Double[] getPositionsAsDoubles() { Vector<Double> vals = new Vector<Double>(); if (getPositions() != null) { for (Object data : getPositions()) { PlottableDetectorData wrapper = new DetectorDataWrapper(data); Double[] dvals = wrapper.getDoubleVals(); vals.addAll(Arrays.asList(dvals)); } } if (vals.size() != getPositionHeader().size()) { throw new IllegalArgumentException("Position data does not hold the expected number of fields"); } return vals.toArray(new Double[] {}); }
From source file:gda.data.scan.datawriter.scannablewriter.SingleScannableWriter.java
@Override public Collection<? extends SelfCreatingLink> makeScannable(final NeXusFileInterface file, final Scannable s, final Object position, final int[] dim) throws NexusException { final Vector<SelfCreatingLink> sclc = new Vector<SelfCreatingLink>(); resetComponentWriters();//w w w . j a v a2 s .c om for (int i = 0; i < componentsFor(s); i++) { try { if (getPaths() == null || getPaths().length <= i || getPaths()[i].isEmpty()) { continue; } final String componentName = componentNameFor(s, i); final String unit; if (getUnits() != null && getUnits().length > i) { unit = getUnits()[i]; } else if (s instanceof ScannableMotionUnits) { unit = ((ScannableMotionUnits) s).getUserUnits(); } else { unit = null; } final Object componentObject = getComponentObject(s, position, i); final ComponentWriter cw = getComponentWriter(s, componentName, componentObject); final Collection<SelfCreatingLink> compLinks = cw.makeComponent(file, dim, getPaths()[i], s.getName(), componentName, componentObject, unit); if (cw != null) { sclc.addAll(compLinks); } } catch (final Exception e) { LOGGER.error("error converting scannable data", e); } } return sclc; }